Wall clock time and date at job start Sat Apr 11 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 111.00064 * 2 1 4 4 C 1.53004 * 109.46700 * 66.04917 * 3 2 1 5 5 N 1.46503 * 109.46788 * 180.02562 * 4 3 2 6 6 C 1.34775 * 119.99792 * 179.97438 * 5 4 3 7 7 O 1.21583 * 120.00286 * 0.02562 * 6 5 4 8 8 C 1.47544 * 119.99951 * 179.97438 * 6 5 4 9 9 C 1.39905 * 120.18711 * 270.00050 * 8 6 5 10 10 F 1.35097 * 120.09760 * 359.70289 * 9 8 6 11 11 C 1.38223 * 119.80441 * 179.97438 * 9 8 6 12 12 C 1.38302 * 120.19111 * 0.02562 * 11 9 8 13 13 C 1.38300 * 120.38208 * 359.95534 * 12 11 9 14 14 C 1.38226 * 120.19459 * 0.04583 * 13 12 11 15 15 F 1.35094 * 120.09926 * 179.97438 * 14 13 12 16 16 C 1.46904 * 111.00180 * 236.04895 * 2 1 3 17 17 C 1.50703 * 109.46830 * 293.95359 * 16 2 1 18 18 O 1.21290 * 120.00110 * 0.02562 * 17 16 2 19 19 N 1.34776 * 119.99506 * 179.97438 * 17 16 2 20 20 C 1.37104 * 119.99601 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99688 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00018 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99944 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99857 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47228 * 89.99848 * 24 22 20 26 26 H 1.48497 * 109.47005 * 209.99978 * 24 22 20 27 27 H 1.48502 * 109.47195 * 329.99626 * 24 22 20 28 28 H 1.09003 * 109.46978 * 60.00017 * 1 2 3 29 29 H 1.08995 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47026 * 299.99544 * 1 2 3 31 31 H 1.08995 * 109.47210 * 306.04988 * 3 2 1 32 32 H 1.08998 * 109.47026 * 186.04295 * 3 2 1 33 33 H 1.08995 * 109.47232 * 60.00084 * 4 3 2 34 34 H 1.08998 * 109.46873 * 299.99472 * 4 3 2 35 35 H 0.97001 * 120.00250 * 359.97438 * 5 4 3 36 36 H 1.07999 * 119.90364 * 179.97438 * 11 9 8 37 37 H 1.07996 * 119.80831 * 180.02562 * 12 11 9 38 38 H 1.08006 * 119.90325 * 180.02562 * 13 12 11 39 39 H 1.08994 * 109.47061 * 53.94987 * 16 2 1 40 40 H 1.08996 * 109.47057 * 173.95352 * 16 2 1 41 41 H 0.96991 * 120.00654 * 0.02562 * 19 17 16 42 42 H 0.97002 * 119.99919 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3184 5 7 2.1560 3.4253 1.3181 6 6 1.9545 4.2244 2.3846 7 8 1.3380 3.8099 3.3470 8 6 2.4832 5.6018 2.3846 9 6 3.7669 5.8626 2.8761 10 9 4.5255 4.8542 3.3585 11 6 4.2545 7.1560 2.8719 12 6 3.4772 8.1908 2.3842 13 6 2.2074 7.9417 1.8961 14 6 1.7039 6.6544 1.8928 15 9 0.4631 6.4134 1.4161 16 6 1.9955 -0.7659 -1.1376 17 6 1.6369 -2.2204 -0.9729 18 8 1.0046 -2.5831 -0.0035 19 7 2.0181 -3.1179 -1.9034 20 6 1.6914 -4.4410 -1.7538 21 1 1.1291 -4.7641 -0.8902 22 6 2.0839 -5.3663 -2.7133 23 7 1.7712 -6.6345 -2.5697 24 14 3.0571 -4.8075 -4.2066 25 1 4.5095 -4.8759 -3.9049 26 1 2.7484 -5.6928 -5.3582 27 1 2.6869 -3.4094 -4.5440 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5611 1.9274 -0.8308 32 1 3.0797 1.3444 -0.1082 33 1 2.0658 1.5014 2.1492 34 1 0.5472 2.0844 1.4265 35 1 2.6482 3.7559 0.5505 36 1 5.2450 7.3592 3.2514 37 1 3.8645 9.1989 2.3835 38 1 1.6072 8.7556 1.5167 39 1 1.5611 -0.3872 -2.0628 40 1 3.0797 -0.6610 -1.1756 41 1 2.5234 -2.8278 -2.6788 42 1 2.0455 -7.2805 -3.2393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690991060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:06 Heat of formation + Delta-G solvation = -113.030149 kcal Electronic energy + Delta-G solvation = -28325.602946 eV Core-core repulsion = 23749.559717 eV Total energy + Delta-G solvation = -4576.043229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.61223 -49.58202 -40.31727 -38.99155 -38.67868 -36.93145 -34.81336 -33.87430 -32.13041 -31.67971 -31.03406 -29.54384 -27.85794 -25.69191 -24.66506 -23.48891 -23.46969 -21.35272 -21.09082 -19.36543 -18.90365 -18.29706 -18.10418 -17.90863 -16.90522 -16.31196 -16.25421 -16.01593 -15.88208 -15.87287 -15.77378 -15.04233 -15.00307 -14.95330 -14.64702 -14.13767 -13.84794 -13.64461 -13.40595 -13.13137 -13.08306 -12.66934 -12.53675 -12.50363 -12.44399 -12.08427 -11.89945 -11.56291 -11.39234 -11.15720 -11.05253 -10.60634 -10.47783 -9.97832 -9.73246 -9.54577 -9.44876 -9.37944 -8.61320 -8.18722 -8.02742 -6.31054 -3.82491 0.11272 0.28983 2.07648 2.52436 2.70823 3.01341 3.06083 3.13407 3.14404 3.70458 3.72595 3.84432 4.01816 4.09837 4.16134 4.21270 4.42289 4.70000 4.76316 4.95428 4.99330 5.06786 5.20108 5.21825 5.29333 5.29674 5.44979 5.46770 5.58323 5.72900 5.77221 5.80170 5.88673 5.94830 5.99801 6.05479 6.49361 7.00760 7.09524 7.21056 7.58083 7.74371 8.14567 8.60018 8.95307 9.42208 9.83033 10.82050 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.023285 B = 0.001829 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.208836 B =15304.070110 C =15539.118949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.515 5.515 3 C 0.045 3.955 4 C 0.120 3.880 5 N -0.714 5.714 6 C 0.565 3.435 7 O -0.513 6.513 8 C -0.199 4.199 9 C 0.165 3.835 10 F -0.119 7.119 11 C -0.165 4.165 12 C -0.045 4.045 13 C -0.165 4.165 14 C 0.164 3.836 15 F -0.120 7.120 16 C 0.044 3.956 17 C 0.452 3.548 18 O -0.557 6.557 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.017 0.983 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.402 0.598 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.050 0.950 40 H 0.090 0.910 41 H 0.370 0.630 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.376 34.515 3.774 35.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.239 5.239 3 C -0.084 4.084 4 C -0.003 4.003 5 N -0.366 5.366 6 C 0.349 3.651 7 O -0.388 6.388 8 C -0.205 4.205 9 C 0.145 3.855 10 F -0.097 7.097 11 C -0.184 4.184 12 C -0.063 4.063 13 C -0.184 4.184 14 C 0.144 3.856 15 F -0.098 7.098 16 C -0.087 4.087 17 C 0.238 3.762 18 O -0.439 6.439 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.138 0.862 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.035 0.965 29 H 0.118 0.882 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.236 0.764 36 H 0.168 0.832 37 H 0.168 0.832 38 H 0.168 0.832 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.203 0.797 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.615 33.395 5.486 34.305 hybrid contribution 0.711 0.585 -2.448 2.616 sum 6.326 33.980 3.038 34.698 Atomic orbital electron populations 1.22656 0.86225 1.04920 0.99331 1.61430 1.09142 1.10425 1.42883 1.22246 1.00850 0.89751 0.95561 1.21446 0.99918 0.79939 0.99045 1.45883 1.57221 1.14423 1.19048 1.17679 0.80123 0.84073 0.83270 1.90872 1.39629 1.74544 1.33764 1.19964 0.95789 0.95316 1.09386 1.17334 0.87262 0.85465 0.95483 1.91606 1.74304 1.58974 1.84799 1.21224 1.02624 0.90398 1.04147 1.21032 0.92188 0.99675 0.93389 1.21216 0.97798 0.95156 1.04263 1.17325 0.80271 0.92560 0.95490 1.91595 1.38070 1.95093 1.85060 1.21904 1.00813 0.94098 0.91899 1.19598 0.85202 0.86378 0.85033 1.90538 1.42514 1.79879 1.30937 1.42203 1.51063 1.08390 1.21403 1.19431 1.33840 0.80291 1.09720 0.86238 1.25042 0.97907 0.95144 0.98118 1.69622 1.45654 1.01141 1.35687 0.86669 0.80911 0.78659 0.83109 1.19607 1.20212 1.19575 0.96473 0.88247 0.91646 0.94383 0.90125 0.89719 0.90684 0.76433 0.83159 0.83240 0.83198 0.93194 0.89151 0.79747 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.96 60.06 0.54 0.79 16 2 N -0.51 -8.08 4.50 -244.37 -1.10 -9.18 16 3 C 0.04 0.51 5.07 -3.82 -0.02 0.49 16 4 C 0.12 1.43 5.60 -4.04 -0.02 1.41 16 5 N -0.71 -7.32 5.55 -61.35 -0.34 -7.66 16 6 C 0.57 7.05 6.54 -12.47 -0.08 6.96 16 7 O -0.51 -8.58 17.11 5.29 0.09 -8.49 16 8 C -0.20 -1.89 5.64 -104.86 -0.59 -2.48 16 9 C 0.16 1.33 7.29 -38.96 -0.28 1.05 16 10 F -0.12 -1.18 16.83 2.25 0.04 -1.14 16 11 C -0.17 -0.77 10.01 -39.56 -0.40 -1.17 16 12 C -0.04 -0.14 10.03 -39.53 -0.40 -0.54 16 13 C -0.17 -0.76 10.01 -39.56 -0.40 -1.16 16 14 C 0.16 1.30 7.29 -38.97 -0.28 1.02 16 15 F -0.12 -1.15 16.83 2.25 0.04 -1.12 16 16 C 0.04 0.72 5.45 -4.97 -0.03 0.70 16 17 C 0.45 10.18 7.47 -10.98 -0.08 10.10 16 18 O -0.56 -14.80 13.91 5.55 0.08 -14.72 16 19 N -0.59 -13.96 5.09 -10.96 -0.06 -14.02 16 20 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 21 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.73 13.96 55.50 0.77 -24.96 16 24 Si 0.88 19.24 27.74 -169.99 -4.71 14.53 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.27 -5.35 6.52 56.52 0.37 -4.99 16 28 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.10 1.93 5.82 -51.93 -0.30 1.62 16 30 H 0.06 0.94 6.47 -51.93 -0.34 0.60 16 31 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 32 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.97 6.55 -51.93 -0.34 0.63 16 35 H 0.40 2.89 8.46 -40.82 -0.35 2.55 16 36 H 0.15 0.36 8.06 -52.49 -0.42 -0.06 16 37 H 0.15 -0.02 8.06 -52.49 -0.42 -0.44 16 38 H 0.15 0.35 8.06 -52.48 -0.42 -0.08 16 39 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 40 H 0.09 1.26 7.93 -51.93 -0.41 0.85 16 41 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 42 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 368.59 15.07 5.55 5.55 Total: -1.00 -36.18 368.59 -6.82 -43.01 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -4.90 Total: 8.71 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: -2.29 Total: 9.47 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.72 Total: -55.81 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.17 Total: -23.21 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.08 Total: -2.25 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.18 -6.82 -43.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690991060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.023 kcal (2) G-P(sol) polarization free energy of solvation -36.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds