Wall clock time and date at job start Sat Apr 11 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 111.00064 * 2 1 4 4 C 1.53004 * 109.46700 * 66.04917 * 3 2 1 5 5 N 1.46503 * 109.46788 * 180.02562 * 4 3 2 6 6 C 1.34775 * 119.99792 * 179.97438 * 5 4 3 7 7 O 1.21583 * 120.00286 * 0.02562 * 6 5 4 8 8 C 1.47544 * 119.99951 * 179.97438 * 6 5 4 9 9 C 1.39905 * 120.18711 * 270.00050 * 8 6 5 10 10 F 1.35097 * 120.09760 * 359.70289 * 9 8 6 11 11 C 1.38223 * 119.80441 * 179.97438 * 9 8 6 12 12 C 1.38302 * 120.19111 * 0.02562 * 11 9 8 13 13 C 1.38300 * 120.38208 * 359.95534 * 12 11 9 14 14 C 1.38226 * 120.19459 * 0.04583 * 13 12 11 15 15 F 1.35094 * 120.09926 * 179.97438 * 14 13 12 16 16 C 1.46904 * 111.00180 * 236.04895 * 2 1 3 17 17 C 1.50703 * 109.46830 * 293.95359 * 16 2 1 18 18 O 1.21290 * 120.00110 * 0.02562 * 17 16 2 19 19 N 1.34776 * 119.99506 * 179.97438 * 17 16 2 20 20 C 1.37104 * 119.99601 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99688 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00018 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99944 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99857 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47228 * 89.99848 * 24 22 20 26 26 H 1.48497 * 109.47005 * 209.99978 * 24 22 20 27 27 H 1.48502 * 109.47195 * 329.99626 * 24 22 20 28 28 H 1.09003 * 109.46978 * 60.00017 * 1 2 3 29 29 H 1.08995 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47026 * 299.99544 * 1 2 3 31 31 H 1.08995 * 109.47210 * 306.04988 * 3 2 1 32 32 H 1.08998 * 109.47026 * 186.04295 * 3 2 1 33 33 H 1.08995 * 109.47232 * 60.00084 * 4 3 2 34 34 H 1.08998 * 109.46873 * 299.99472 * 4 3 2 35 35 H 0.97001 * 120.00250 * 359.97438 * 5 4 3 36 36 H 1.07999 * 119.90364 * 179.97438 * 11 9 8 37 37 H 1.07996 * 119.80831 * 180.02562 * 12 11 9 38 38 H 1.08006 * 119.90325 * 180.02562 * 13 12 11 39 39 H 1.08994 * 109.47061 * 53.94987 * 16 2 1 40 40 H 1.08996 * 109.47057 * 173.95352 * 16 2 1 41 41 H 0.96991 * 120.00654 * 0.02562 * 19 17 16 42 42 H 0.97002 * 119.99919 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3184 5 7 2.1560 3.4253 1.3181 6 6 1.9545 4.2244 2.3846 7 8 1.3380 3.8099 3.3470 8 6 2.4832 5.6018 2.3846 9 6 3.7669 5.8626 2.8761 10 9 4.5255 4.8542 3.3585 11 6 4.2545 7.1560 2.8719 12 6 3.4772 8.1908 2.3842 13 6 2.2074 7.9417 1.8961 14 6 1.7039 6.6544 1.8928 15 9 0.4631 6.4134 1.4161 16 6 1.9955 -0.7659 -1.1376 17 6 1.6369 -2.2204 -0.9729 18 8 1.0046 -2.5831 -0.0035 19 7 2.0181 -3.1179 -1.9034 20 6 1.6914 -4.4410 -1.7538 21 1 1.1291 -4.7641 -0.8902 22 6 2.0839 -5.3663 -2.7133 23 7 1.7712 -6.6345 -2.5697 24 14 3.0571 -4.8075 -4.2066 25 1 4.5095 -4.8759 -3.9049 26 1 2.7484 -5.6928 -5.3582 27 1 2.6869 -3.4094 -4.5440 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5611 1.9274 -0.8308 32 1 3.0797 1.3444 -0.1082 33 1 2.0658 1.5014 2.1492 34 1 0.5472 2.0844 1.4265 35 1 2.6482 3.7559 0.5505 36 1 5.2450 7.3592 3.2514 37 1 3.8645 9.1989 2.3835 38 1 1.6072 8.7556 1.5167 39 1 1.5611 -0.3872 -2.0628 40 1 3.0797 -0.6610 -1.1756 41 1 2.5234 -2.8278 -2.6788 42 1 2.0455 -7.2805 -3.2393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690991060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:06 Heat of formation + Delta-G solvation = -142.748118 kcal Electronic energy + Delta-G solvation = -28326.891614 eV Core-core repulsion = 23749.559717 eV Total energy + Delta-G solvation = -4577.331897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.22335 -50.19994 -41.18519 -40.50757 -39.39403 -38.26089 -36.11852 -35.65218 -33.75319 -32.73442 -31.45554 -30.62864 -29.18354 -27.10280 -25.84887 -24.58418 -23.95497 -22.41825 -21.97188 -21.25081 -20.18158 -19.53287 -18.81275 -18.48024 -17.82742 -17.69526 -17.01436 -16.89887 -16.81337 -16.77345 -16.50619 -16.46681 -16.20374 -15.78598 -15.51542 -15.45591 -15.26249 -14.92798 -14.68917 -14.44210 -14.23433 -13.85878 -13.74223 -13.15767 -13.09994 -13.04021 -13.00688 -12.93183 -12.63089 -12.57890 -12.40549 -12.20577 -11.97042 -11.47041 -11.43038 -10.39805 -10.35835 -10.23557 -10.22824 -9.89751 -9.28372 -8.40374 -6.01384 -0.36087 -0.13872 1.15640 1.30344 1.36743 1.45352 1.74454 1.96944 2.23387 2.24058 2.62276 2.67730 3.14997 3.21841 3.25127 3.39932 3.71245 3.72335 3.78477 3.98590 4.10809 4.11916 4.32189 4.40519 4.42225 4.55481 4.58206 4.60478 4.60906 4.77689 4.85589 4.89074 4.98140 5.11261 5.12160 5.17481 5.53549 5.62199 5.85108 5.97586 6.09342 6.20209 6.60742 6.87732 6.89673 7.40872 7.99029 8.77404 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.023285 B = 0.001829 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.208836 B =15304.070110 C =15539.118949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.543 5.543 3 C 0.055 3.945 4 C 0.125 3.875 5 N -0.698 5.698 6 C 0.560 3.440 7 O -0.570 6.570 8 C -0.222 4.222 9 C 0.141 3.859 10 F -0.138 7.138 11 C -0.151 4.151 12 C -0.024 4.024 13 C -0.151 4.151 14 C 0.142 3.858 15 F -0.137 7.137 16 C 0.057 3.943 17 C 0.449 3.551 18 O -0.607 6.607 19 N -0.591 5.591 20 C -0.327 4.327 21 H 0.053 0.947 22 C -0.018 4.018 23 N -0.936 5.936 24 Si 0.967 3.033 25 H -0.257 1.257 26 H -0.276 1.276 27 H -0.229 1.229 28 H 0.040 0.960 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.419 0.581 36 H 0.178 0.822 37 H 0.196 0.804 38 H 0.178 0.822 39 H 0.085 0.915 40 H 0.127 0.873 41 H 0.390 0.610 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.233 39.706 0.945 40.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.268 5.268 3 C -0.072 4.072 4 C 0.001 3.999 5 N -0.350 5.350 6 C 0.346 3.654 7 O -0.449 6.449 8 C -0.227 4.227 9 C 0.121 3.879 10 F -0.116 7.116 11 C -0.170 4.170 12 C -0.042 4.042 13 C -0.170 4.170 14 C 0.122 3.878 15 F -0.116 7.116 16 C -0.074 4.074 17 C 0.237 3.763 18 O -0.491 6.491 19 N -0.233 5.233 20 C -0.457 4.457 21 H 0.071 0.929 22 C -0.216 4.216 23 N -0.577 5.577 24 Si 0.787 3.213 25 H -0.181 1.181 26 H -0.202 1.202 27 H -0.152 1.152 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.256 0.744 36 H 0.195 0.805 37 H 0.213 0.787 38 H 0.196 0.804 39 H 0.103 0.897 40 H 0.144 0.856 41 H 0.226 0.774 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.498 38.637 2.624 39.647 hybrid contribution -0.231 -0.960 -1.416 1.726 sum 8.267 37.677 1.208 38.592 Atomic orbital electron populations 1.22476 0.86910 1.02375 1.00755 1.61287 1.08912 1.13160 1.43407 1.22226 1.02180 0.87332 0.95505 1.21241 0.98935 0.80701 0.99001 1.45736 1.56526 1.13497 1.19256 1.18277 0.79101 0.85422 0.82628 1.90828 1.42282 1.76027 1.35802 1.19830 0.97060 0.93780 1.12061 1.17677 0.86984 0.86487 0.96758 1.91554 1.74655 1.60101 1.85315 1.21623 1.03768 0.88912 1.02688 1.21594 0.90884 1.01156 0.90559 1.21624 0.98507 0.94081 1.02754 1.17651 0.79801 0.93603 0.96771 1.91547 1.39194 1.95332 1.85499 1.21841 1.03109 0.88993 0.93420 1.20940 0.82969 0.88967 0.83443 1.90533 1.44184 1.81473 1.32941 1.42012 1.51874 1.06733 1.22718 1.18987 1.34826 0.83184 1.08662 0.92888 1.26158 0.98716 0.94658 1.02097 1.69814 1.47269 1.03064 1.37533 0.85334 0.78948 0.80209 0.76813 1.18116 1.20166 1.15206 0.94116 0.92636 0.91195 0.91558 0.87762 0.92312 0.92133 0.74376 0.80499 0.78672 0.80431 0.89740 0.85560 0.77423 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 8.96 127.69 1.14 1.86 16 2 N -0.54 -16.25 4.50 -927.05 -4.17 -20.42 16 3 C 0.06 1.11 5.07 86.30 0.44 1.54 16 4 C 0.13 3.00 5.60 86.38 0.48 3.48 16 5 N -0.70 -14.12 5.55 -466.26 -2.59 -16.71 16 6 C 0.56 14.54 6.54 86.70 0.57 15.11 16 7 O -0.57 -20.48 17.11 -3.98 -0.07 -20.55 16 8 C -0.22 -4.17 5.64 -20.02 -0.11 -4.28 16 9 C 0.14 2.13 7.29 22.67 0.17 2.29 16 10 F -0.14 -2.74 16.83 44.97 0.76 -1.99 16 11 C -0.15 -0.88 10.01 22.28 0.22 -0.66 16 12 C -0.02 -0.03 10.03 22.30 0.22 0.19 16 13 C -0.15 -0.84 10.01 22.28 0.22 -0.62 16 14 C 0.14 2.08 7.29 22.67 0.17 2.25 16 15 F -0.14 -2.61 16.83 44.97 0.76 -1.85 16 16 C 0.06 1.69 5.45 85.56 0.47 2.16 16 17 C 0.45 20.27 7.47 87.66 0.66 20.92 16 18 O -0.61 -34.03 13.91 -3.06 -0.04 -34.08 16 19 N -0.59 -27.76 5.09 -306.98 -1.56 -29.32 16 20 C -0.33 -19.30 10.16 84.04 0.85 -18.44 16 21 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 22 C -0.02 -1.00 5.50 84.93 0.47 -0.54 16 23 N -0.94 -56.92 13.96 21.66 0.30 -56.62 16 24 Si 0.97 38.55 27.74 68.60 1.90 40.45 16 25 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 26 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.23 -7.54 6.52 99.48 0.65 -6.89 16 28 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 2.25 5.82 -2.39 -0.01 2.24 16 30 H 0.07 2.08 6.47 -2.39 -0.02 2.06 16 31 H 0.07 1.02 8.12 -2.39 -0.02 1.00 16 32 H 0.10 1.64 7.93 -2.39 -0.02 1.62 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 1.63 6.55 -2.39 -0.02 1.61 16 35 H 0.42 5.37 8.46 -92.71 -0.78 4.58 16 36 H 0.18 0.08 8.06 -2.91 -0.02 0.06 16 37 H 0.20 -1.43 8.06 -2.91 -0.02 -1.45 16 38 H 0.18 0.00 8.06 -2.91 -0.02 -0.03 16 39 H 0.08 2.00 8.12 -2.39 -0.02 1.98 16 40 H 0.13 2.91 7.93 -2.39 -0.02 2.89 16 41 H 0.39 14.92 5.76 -92.72 -0.53 14.38 16 42 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -90.81 368.59 0.97 -89.84 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: -0.28 Total: 25.97 kcal Atomic # 6 Polarization: 19.31 SS G_CDS: 5.96 Total: 25.27 kcal Atomic # 7 Polarization: -115.05 SS G_CDS: -8.02 Total: -123.07 kcal Atomic # 8 Polarization: -54.51 SS G_CDS: -0.11 Total: -54.63 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 1.51 Total: -3.84 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 1.90 Total: 40.45 kcal Total: -90.81 0.97 -89.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690991060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.905 kcal (2) G-P(sol) polarization free energy of solvation -90.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds