Wall clock time and date at job start Sat Apr 11 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36938 * 119.99305 * 2 1 4 4 H 1.08001 * 120.00106 * 204.75131 * 3 2 1 5 5 C 1.38807 * 120.00515 * 24.75945 * 3 2 1 6 6 N 1.31619 * 119.99970 * 6.28790 * 5 3 2 7 7 Si 1.86802 * 120.00272 * 186.28736 * 5 3 2 8 8 H 1.48496 * 109.47197 * 89.99985 * 7 5 3 9 9 H 1.48505 * 109.47098 * 209.99593 * 7 5 3 10 10 H 1.48499 * 109.47190 * 329.99567 * 7 5 3 11 11 C 1.46493 * 120.00266 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47133 * 269.99948 * 11 2 1 13 13 O 1.42903 * 109.47312 * 65.00382 * 12 11 2 14 14 C 1.42894 * 114.00439 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47450 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.46652 * 65.00047 * 15 14 13 17 17 C 1.46502 * 119.99969 * 269.99640 * 16 15 14 18 18 C 1.34778 * 120.00470 * 90.00448 * 16 15 14 19 19 O 1.21524 * 119.99779 * 2.18002 * 18 16 15 20 20 C 1.48108 * 120.00042 * 182.18887 * 18 16 15 21 21 C 1.39347 * 119.70415 * 172.63610 * 20 18 16 22 22 C 1.38530 * 119.07850 * 179.97438 * 21 20 18 23 23 C 1.38771 * 118.47394 * 359.97438 * 22 21 20 24 24 Cl 1.73594 * 120.33610 * 179.97438 * 23 22 21 25 25 C 1.38722 * 119.32591 * 0.02562 * 23 22 21 26 26 N 1.31492 * 120.88074 * 0.02562 * 25 23 22 27 27 H 1.09005 * 109.47522 * 275.03550 * 1 2 3 28 28 H 1.09003 * 109.47374 * 35.04050 * 1 2 3 29 29 H 1.09004 * 109.46999 * 155.03908 * 1 2 3 30 30 H 0.97004 * 120.00207 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.46885 * 150.00446 * 11 2 1 32 32 H 1.08995 * 109.47183 * 30.00223 * 11 2 1 33 33 H 1.09003 * 109.47490 * 305.00270 * 12 11 2 34 34 H 1.09005 * 109.47532 * 185.00020 * 12 11 2 35 35 H 1.09001 * 109.47352 * 59.99157 * 14 13 12 36 36 H 1.09000 * 109.46999 * 300.00153 * 14 13 12 37 37 H 1.08995 * 109.47208 * 304.99839 * 15 14 13 38 38 H 1.08994 * 109.47298 * 184.99612 * 15 14 13 39 39 H 1.08994 * 109.47528 * 263.74290 * 17 16 15 40 40 H 1.09004 * 109.46692 * 23.74640 * 17 16 15 41 41 H 1.09004 * 109.47376 * 143.73979 * 17 16 15 42 42 H 1.07996 * 120.46322 * 0.24130 * 21 20 18 43 43 H 1.07995 * 120.76540 * 180.02562 * 22 21 20 44 44 H 1.08001 * 119.55988 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1860 0.0000 4 1 3.1551 1.2291 -0.3916 5 6 1.5511 2.3328 0.5034 6 7 0.3767 2.2579 1.0928 7 14 2.4127 3.9827 0.3446 8 1 2.0096 4.6310 -0.9291 9 1 2.0302 4.8528 1.4856 10 1 3.8832 3.7759 0.3510 11 6 2.1975 -1.2686 -0.0006 12 6 2.4525 -1.7109 1.4417 13 8 1.2061 -1.9945 2.0805 14 6 1.3324 -2.4180 3.4394 15 6 -0.0566 -2.6915 4.0196 16 7 -0.6655 -3.8231 3.3161 17 6 -1.4797 -3.5900 2.1206 18 6 -0.4768 -5.0785 3.7685 19 8 0.1654 -5.2688 4.7825 20 6 -1.0518 -6.2262 3.0298 21 6 -0.7269 -7.5262 3.4122 22 6 -1.2726 -8.5901 2.7126 23 6 -2.1263 -8.3170 1.6532 24 17 -2.8367 -9.6133 0.7430 25 6 -2.4054 -6.9975 1.3282 26 7 -1.8721 -6.0074 2.0095 27 1 -0.3634 0.0902 1.0237 28 1 -0.3634 0.8414 -0.5900 29 1 -0.3633 -0.9317 -0.4337 30 1 -0.0417 3.0594 1.4443 31 1 3.1499 -1.1380 -0.5143 32 1 1.6085 -2.0280 -0.5147 33 1 2.9642 -0.9138 1.9812 34 1 3.0733 -2.6069 1.4427 35 1 1.8207 -1.6353 4.0200 36 1 1.9301 -3.3284 3.4821 37 1 -0.6824 -1.8076 3.8963 38 1 0.0326 -2.9284 5.0798 39 1 -2.5330 -3.5572 2.3991 40 1 -1.1943 -2.6413 1.6660 41 1 -1.3175 -4.3981 1.4073 42 1 -0.0624 -7.7020 4.2451 43 1 -1.0397 -9.6086 2.9858 44 1 -3.0697 -6.7807 0.5047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692306794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:15 Heat of formation + Delta-G solvation = -1.044007 kcal Electronic energy + Delta-G solvation = -27529.005134 eV Core-core repulsion = 23509.614669 eV Total energy + Delta-G solvation = -4019.390466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.10463 -39.28738 -37.47302 -37.10782 -35.72639 -34.94950 -33.04854 -31.89271 -31.38138 -29.76203 -27.93019 -26.52616 -25.69440 -24.77677 -24.18954 -22.94231 -22.54429 -20.30078 -20.04136 -17.70633 -17.53776 -16.88208 -16.74256 -16.12353 -15.96254 -15.62850 -15.20447 -15.06211 -14.61173 -14.51815 -13.98892 -13.87143 -13.72707 -13.31764 -13.07059 -12.80768 -12.75387 -12.49681 -12.29142 -12.13355 -11.93080 -11.67215 -11.40365 -11.29501 -10.92170 -10.79676 -10.73378 -10.47838 -10.42688 -10.32952 -10.02735 -9.88001 -9.78801 -9.49763 -9.42260 -8.88721 -8.54390 -8.46206 -6.62099 -5.63383 -3.11457 0.08299 0.65002 1.47854 2.44339 2.89118 3.40753 3.41355 3.46899 3.47988 3.76916 4.18023 4.25465 4.31663 4.41221 4.55584 4.61726 5.19773 5.26395 5.34692 5.37121 5.43947 5.48109 5.62674 5.64367 5.71397 5.84917 5.88076 5.91433 6.01754 6.15327 6.24733 6.30213 6.44513 6.58534 6.61351 6.82622 6.98382 7.16980 7.38383 7.55475 7.85264 7.91009 8.00803 8.03210 8.49821 9.34144 9.96769 10.47995 11.40242 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.019183 B = 0.002342 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.274480 B =11950.434587 C =12623.748942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.597 5.597 3 C -0.255 4.255 4 H 0.065 0.935 5 C 0.003 3.997 6 N -0.904 5.904 7 Si 0.902 3.098 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.281 1.281 11 C 0.154 3.846 12 C 0.045 3.955 13 O -0.365 6.365 14 C 0.049 3.951 15 C 0.117 3.883 16 N -0.577 5.577 17 C 0.077 3.923 18 C 0.562 3.438 19 O -0.542 6.542 20 C 0.089 3.911 21 C -0.100 4.100 22 C -0.072 4.072 23 C -0.073 4.073 24 Cl -0.050 7.050 25 C 0.108 3.892 26 N -0.429 5.429 27 H 0.033 0.967 28 H 0.036 0.964 29 H -0.008 1.008 30 H 0.250 0.750 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.021 0.979 35 H 0.054 0.946 36 H 0.040 0.960 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.157 0.843 43 H 0.152 0.848 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.199 -23.058 3.040 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.320 5.320 3 C -0.384 4.384 4 H 0.083 0.917 5 C -0.195 4.195 6 N -0.549 5.549 7 Si 0.732 3.268 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.026 3.974 12 C -0.035 4.035 13 O -0.284 6.284 14 C -0.030 4.030 15 C -0.005 4.005 16 N -0.306 5.306 17 C -0.066 4.066 18 C 0.349 3.651 19 O -0.420 6.420 20 C -0.048 4.048 21 C -0.121 4.121 22 C -0.099 4.099 23 C -0.103 4.103 24 Cl -0.021 7.021 25 C -0.051 4.051 26 N -0.141 5.141 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.010 0.990 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.118 0.882 42 H 0.175 0.825 43 H 0.170 0.830 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -6.407 -22.179 3.244 23.313 hybrid contribution 0.842 -0.022 0.283 0.889 sum -5.565 -22.201 3.527 23.158 Atomic orbital electron populations 1.20704 0.82180 0.94534 0.99389 1.43847 1.02149 1.00165 1.85801 1.19200 0.99180 0.86171 1.33895 0.91704 1.25091 0.97464 0.98484 0.98459 1.70073 1.16220 1.27151 1.41504 0.86297 0.79026 0.84322 0.77108 1.21581 1.21779 1.20647 1.20872 0.96300 0.88818 0.91395 1.23449 0.85300 0.96656 0.98083 1.87946 1.30187 1.87221 1.23033 1.22744 0.96478 0.98013 0.85720 1.21677 0.93935 0.88519 0.96366 1.47693 1.49067 1.05153 1.28724 1.22432 0.93319 1.04313 0.86486 1.17832 0.80536 0.82558 0.84217 1.90777 1.41665 1.84757 1.24776 1.21398 0.95904 0.93830 0.93714 1.22133 0.98936 0.91043 0.99994 1.21572 0.94325 1.00926 0.93056 1.22398 0.99782 0.91220 0.96863 1.98404 1.82292 1.48352 1.73022 1.23072 0.97137 0.86068 0.98842 1.68437 1.07483 1.33249 1.04906 0.94879 0.94554 0.98964 0.93948 0.92570 0.93941 0.93485 0.96077 0.92741 0.94197 0.88776 0.88782 0.92928 0.89989 0.88208 0.82491 0.83015 0.80956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.44 8.60 59.84 0.51 4.95 16 2 N -0.60 -15.21 2.89 -181.13 -0.52 -15.73 16 3 C -0.25 -7.03 9.66 -15.06 -0.15 -7.18 16 4 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 5 C 0.00 0.09 5.23 -17.43 -0.09 0.00 16 6 N -0.90 -26.41 10.47 55.49 0.58 -25.83 16 7 Si 0.90 21.97 29.56 -169.99 -5.02 16.95 16 8 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 9 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 C 0.15 3.23 6.11 -4.05 -0.02 3.21 16 12 C 0.04 0.87 6.28 37.16 0.23 1.11 16 13 O -0.37 -7.10 8.84 -35.23 -0.31 -7.41 16 14 C 0.05 0.80 6.28 37.16 0.23 1.04 16 15 C 0.12 1.72 5.80 -4.04 -0.02 1.70 16 16 N -0.58 -8.28 2.84 -182.60 -0.52 -8.80 16 17 C 0.08 1.03 9.07 59.85 0.54 1.57 16 18 C 0.56 8.06 7.66 -12.21 -0.09 7.97 16 19 O -0.54 -8.82 15.91 5.34 0.09 -8.73 16 20 C 0.09 1.05 6.62 -83.01 -0.55 0.50 16 21 C -0.10 -0.94 9.63 -39.06 -0.38 -1.31 16 22 C -0.07 -0.53 9.97 -39.28 -0.39 -0.92 16 23 C -0.07 -0.56 6.35 -39.21 -0.25 -0.81 16 24 Cl -0.05 -0.34 28.99 -51.86 -1.50 -1.84 16 25 C 0.11 0.91 10.98 -17.52 -0.19 0.72 16 26 N -0.43 -4.64 6.04 -9.77 -0.06 -4.70 16 27 H 0.03 0.90 7.34 -51.93 -0.38 0.52 16 28 H 0.04 0.98 7.27 -51.93 -0.38 0.60 16 29 H -0.01 -0.18 7.84 -51.93 -0.41 -0.59 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.06 1.11 8.04 -51.93 -0.42 0.70 16 32 H 0.04 0.83 7.86 -51.93 -0.41 0.43 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 38 H 0.09 1.30 7.39 -51.93 -0.38 0.91 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.27 7.25 -51.93 -0.38 0.89 16 41 H 0.10 1.29 5.26 -52.09 -0.27 1.02 16 42 H 0.16 1.35 7.66 -52.49 -0.40 0.95 16 43 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 382.04 15.07 5.76 5.76 Total: -1.00 -32.12 382.04 -8.48 -40.60 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -6.35 Total: -2.80 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: -0.61 Total: 12.54 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.52 Total: -55.06 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.23 Total: -16.14 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.50 Total: -1.84 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.12 -8.48 -40.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692306794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.554 kcal (2) G-P(sol) polarization free energy of solvation -32.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds