Wall clock time and date at job start Sat Apr 11 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36938 * 119.99305 * 2 1 4 4 H 1.08001 * 120.00106 * 204.75131 * 3 2 1 5 5 C 1.38807 * 120.00515 * 24.75945 * 3 2 1 6 6 N 1.31619 * 119.99970 * 6.28790 * 5 3 2 7 7 Si 1.86802 * 120.00272 * 186.28736 * 5 3 2 8 8 H 1.48496 * 109.47197 * 89.99985 * 7 5 3 9 9 H 1.48505 * 109.47098 * 209.99593 * 7 5 3 10 10 H 1.48499 * 109.47190 * 329.99567 * 7 5 3 11 11 C 1.46493 * 120.00266 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47133 * 269.99948 * 11 2 1 13 13 O 1.42903 * 109.47312 * 65.00382 * 12 11 2 14 14 C 1.42894 * 114.00439 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47450 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.46652 * 65.00047 * 15 14 13 17 17 C 1.46502 * 119.99969 * 269.99640 * 16 15 14 18 18 C 1.34778 * 120.00470 * 90.00448 * 16 15 14 19 19 O 1.21524 * 119.99779 * 2.18002 * 18 16 15 20 20 C 1.48108 * 120.00042 * 182.18887 * 18 16 15 21 21 C 1.39347 * 119.70415 * 172.63610 * 20 18 16 22 22 C 1.38530 * 119.07850 * 179.97438 * 21 20 18 23 23 C 1.38771 * 118.47394 * 359.97438 * 22 21 20 24 24 Cl 1.73594 * 120.33610 * 179.97438 * 23 22 21 25 25 C 1.38722 * 119.32591 * 0.02562 * 23 22 21 26 26 N 1.31492 * 120.88074 * 0.02562 * 25 23 22 27 27 H 1.09005 * 109.47522 * 275.03550 * 1 2 3 28 28 H 1.09003 * 109.47374 * 35.04050 * 1 2 3 29 29 H 1.09004 * 109.46999 * 155.03908 * 1 2 3 30 30 H 0.97004 * 120.00207 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.46885 * 150.00446 * 11 2 1 32 32 H 1.08995 * 109.47183 * 30.00223 * 11 2 1 33 33 H 1.09003 * 109.47490 * 305.00270 * 12 11 2 34 34 H 1.09005 * 109.47532 * 185.00020 * 12 11 2 35 35 H 1.09001 * 109.47352 * 59.99157 * 14 13 12 36 36 H 1.09000 * 109.46999 * 300.00153 * 14 13 12 37 37 H 1.08995 * 109.47208 * 304.99839 * 15 14 13 38 38 H 1.08994 * 109.47298 * 184.99612 * 15 14 13 39 39 H 1.08994 * 109.47528 * 263.74290 * 17 16 15 40 40 H 1.09004 * 109.46692 * 23.74640 * 17 16 15 41 41 H 1.09004 * 109.47376 * 143.73979 * 17 16 15 42 42 H 1.07996 * 120.46322 * 0.24130 * 21 20 18 43 43 H 1.07995 * 120.76540 * 180.02562 * 22 21 20 44 44 H 1.08001 * 119.55988 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1860 0.0000 4 1 3.1551 1.2291 -0.3916 5 6 1.5511 2.3328 0.5034 6 7 0.3767 2.2579 1.0928 7 14 2.4127 3.9827 0.3446 8 1 2.0096 4.6310 -0.9291 9 1 2.0302 4.8528 1.4856 10 1 3.8832 3.7759 0.3510 11 6 2.1975 -1.2686 -0.0006 12 6 2.4525 -1.7109 1.4417 13 8 1.2061 -1.9945 2.0805 14 6 1.3324 -2.4180 3.4394 15 6 -0.0566 -2.6915 4.0196 16 7 -0.6655 -3.8231 3.3161 17 6 -1.4797 -3.5900 2.1206 18 6 -0.4768 -5.0785 3.7685 19 8 0.1654 -5.2688 4.7825 20 6 -1.0518 -6.2262 3.0298 21 6 -0.7269 -7.5262 3.4122 22 6 -1.2726 -8.5901 2.7126 23 6 -2.1263 -8.3170 1.6532 24 17 -2.8367 -9.6133 0.7430 25 6 -2.4054 -6.9975 1.3282 26 7 -1.8721 -6.0074 2.0095 27 1 -0.3634 0.0902 1.0237 28 1 -0.3634 0.8414 -0.5900 29 1 -0.3633 -0.9317 -0.4337 30 1 -0.0417 3.0594 1.4443 31 1 3.1499 -1.1380 -0.5143 32 1 1.6085 -2.0280 -0.5147 33 1 2.9642 -0.9138 1.9812 34 1 3.0733 -2.6069 1.4427 35 1 1.8207 -1.6353 4.0200 36 1 1.9301 -3.3284 3.4821 37 1 -0.6824 -1.8076 3.8963 38 1 0.0326 -2.9284 5.0798 39 1 -2.5330 -3.5572 2.3991 40 1 -1.1943 -2.6413 1.6660 41 1 -1.3175 -4.3981 1.4073 42 1 -0.0624 -7.7020 4.2451 43 1 -1.0397 -9.6086 2.9858 44 1 -3.0697 -6.7807 0.5047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692306794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:14 Heat of formation + Delta-G solvation = -19.590376 kcal Electronic energy + Delta-G solvation = -27529.809365 eV Core-core repulsion = 23509.614669 eV Total energy + Delta-G solvation = -4020.194696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.94375 -40.28029 -38.95341 -37.72074 -37.26161 -36.47851 -33.81713 -33.40372 -32.59808 -31.10079 -29.57737 -27.78581 -27.59577 -25.76269 -24.88109 -24.76436 -23.63860 -22.12305 -21.06354 -18.83222 -18.58959 -18.30300 -17.71228 -17.37544 -17.21103 -16.85867 -16.77323 -16.26256 -15.90191 -15.61645 -15.28004 -15.16090 -14.92452 -14.63156 -14.52722 -14.12113 -13.79446 -13.66654 -13.48424 -13.16634 -13.11799 -12.96588 -12.89380 -12.70568 -12.59050 -12.44722 -12.30786 -12.18933 -11.99937 -11.78114 -11.68215 -11.45304 -11.02838 -10.59647 -10.44235 -10.29472 -10.14066 -9.66790 -8.68098 -7.75252 -5.25404 -0.66868 0.01285 0.86985 1.47966 1.48444 1.50691 1.57028 1.86034 2.53639 2.59607 2.90294 2.94361 3.37426 3.50246 3.60823 3.75490 3.78973 3.89080 4.08768 4.11515 4.36941 4.42714 4.53245 4.55577 4.58407 4.64106 4.65897 4.68901 4.76582 4.80285 4.90212 4.98708 5.01177 5.14084 5.18395 5.37873 5.44764 5.50744 5.69696 5.91104 6.23047 6.39482 6.45915 6.47881 6.95379 7.23082 7.94946 8.40764 9.27014 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.019183 B = 0.002342 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.274480 B =11950.434587 C =12623.748942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.196 3.804 2 N -0.613 5.613 3 C -0.262 4.262 4 H 0.070 0.930 5 C -0.052 4.052 6 N -0.934 5.934 7 Si 0.966 3.034 8 H -0.287 1.287 9 H -0.297 1.297 10 H -0.270 1.270 11 C 0.151 3.849 12 C 0.053 3.947 13 O -0.381 6.381 14 C 0.052 3.948 15 C 0.122 3.878 16 N -0.582 5.582 17 C 0.088 3.912 18 C 0.560 3.440 19 O -0.568 6.568 20 C 0.064 3.936 21 C -0.099 4.099 22 C -0.062 4.062 23 C -0.068 4.068 24 Cl -0.036 7.036 25 C 0.106 3.894 26 N -0.445 5.445 27 H 0.006 0.994 28 H 0.008 0.992 29 H 0.019 0.981 30 H 0.245 0.755 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.022 0.978 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.043 0.957 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.108 0.892 42 H 0.161 0.839 43 H 0.182 0.818 44 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.964 -25.170 2.291 25.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.336 5.336 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.247 4.247 6 N -0.580 5.580 7 Si 0.795 3.205 8 H -0.213 1.213 9 H -0.224 1.224 10 H -0.194 1.194 11 C 0.024 3.976 12 C -0.027 4.027 13 O -0.300 6.300 14 C -0.026 4.026 15 C -0.001 4.001 16 N -0.312 5.312 17 C -0.054 4.054 18 C 0.348 3.652 19 O -0.448 6.448 20 C -0.073 4.073 21 C -0.120 4.120 22 C -0.088 4.088 23 C -0.097 4.097 24 Cl -0.007 7.007 25 C -0.054 4.054 26 N -0.157 5.157 27 H 0.025 0.975 28 H 0.026 0.974 29 H 0.038 0.962 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.040 0.960 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.106 0.894 38 H 0.120 0.880 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.125 0.875 42 H 0.179 0.821 43 H 0.199 0.801 44 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -6.152 -24.321 2.480 25.209 hybrid contribution 0.728 0.456 0.458 0.973 sum -5.424 -23.864 2.938 24.649 Atomic orbital electron populations 1.20367 0.82499 0.94575 0.97407 1.44064 1.02313 1.01268 1.85973 1.19538 0.99353 0.87228 1.33130 0.91216 1.25836 0.98278 1.01806 0.98804 1.70253 1.17547 1.27510 1.42721 0.85288 0.78497 0.80149 0.76604 1.21349 1.22360 1.19438 1.21049 0.96687 0.87288 0.92545 1.23224 0.85613 0.97125 0.96699 1.87928 1.30270 1.87381 1.24452 1.22808 0.97609 0.97841 0.84366 1.21576 0.92980 0.88755 0.96785 1.47768 1.49212 1.05249 1.28926 1.22360 0.93600 1.03182 0.86284 1.18238 0.80007 0.82990 0.83999 1.90745 1.42935 1.85207 1.25952 1.21113 0.97663 0.93580 0.94913 1.22214 0.98950 0.90598 1.00218 1.21865 0.93155 1.01713 0.92107 1.22479 0.99185 0.91369 0.96661 1.98418 1.82007 1.47598 1.72660 1.23420 0.96994 0.86086 0.98898 1.68267 1.07843 1.34511 1.05106 0.97533 0.97357 0.96246 0.94577 0.91291 0.92317 0.95968 0.93020 0.93056 0.93855 0.89395 0.87952 0.91974 0.92389 0.87456 0.82093 0.80074 0.78857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.01 8.60 127.77 1.10 11.10 16 2 N -0.61 -31.15 2.89 -726.96 -2.10 -33.25 16 3 C -0.26 -14.46 9.66 84.03 0.81 -13.65 16 4 H 0.07 3.71 7.83 -2.91 -0.02 3.68 16 5 C -0.05 -2.95 5.23 84.86 0.44 -2.50 16 6 N -0.93 -55.74 10.47 21.65 0.23 -55.51 16 7 Si 0.97 45.48 29.56 68.60 2.03 47.51 16 8 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 9 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 C 0.15 6.12 6.11 86.38 0.53 6.65 16 12 C 0.05 2.01 6.28 71.98 0.45 2.46 16 13 O -0.38 -14.80 8.84 -148.98 -1.32 -16.12 16 14 C 0.05 1.71 6.28 71.98 0.45 2.16 16 15 C 0.12 3.64 5.80 86.38 0.50 4.14 16 16 N -0.58 -16.80 2.84 -849.90 -2.41 -19.21 16 17 C 0.09 2.35 9.07 127.77 1.16 3.51 16 18 C 0.56 16.00 7.66 86.86 0.67 16.66 16 19 O -0.57 -18.56 15.91 -3.79 -0.06 -18.62 16 20 C 0.06 1.45 6.62 41.90 0.28 1.73 16 21 C -0.10 -1.70 9.63 22.61 0.22 -1.48 16 22 C -0.06 -0.74 9.97 22.47 0.22 -0.52 16 23 C -0.07 -0.86 6.35 22.51 0.14 -0.72 16 24 Cl -0.04 -0.39 28.99 -2.72 -0.08 -0.46 16 25 C 0.11 1.57 10.98 84.86 0.93 2.50 16 26 N -0.45 -9.08 6.04 -184.82 -1.12 -10.20 16 27 H 0.01 0.36 7.34 -2.38 -0.02 0.34 16 28 H 0.01 0.43 7.27 -2.39 -0.02 0.41 16 29 H 0.02 0.85 7.84 -2.38 -0.02 0.83 16 30 H 0.24 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.07 2.61 8.04 -2.39 -0.02 2.59 16 32 H 0.06 2.19 7.86 -2.39 -0.02 2.17 16 33 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 2.72 8.07 -2.39 -0.02 2.70 16 38 H 0.10 2.87 7.39 -2.39 -0.02 2.85 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 1.83 7.25 -2.38 -0.02 1.81 16 41 H 0.11 2.73 5.26 -2.70 -0.01 2.71 16 42 H 0.16 2.58 7.66 -2.91 -0.02 2.55 16 43 H 0.18 1.04 8.06 -2.91 -0.02 1.02 16 44 H 0.19 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -69.08 382.04 4.08 -65.01 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 1.00 Total: 8.81 kcal Atomic # 6 Polarization: 24.15 SS G_CDS: 7.91 Total: 32.06 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -5.40 Total: -118.17 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -1.38 Total: -34.75 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.46 kcal Total: -69.08 4.08 -65.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692306794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.415 kcal (2) G-P(sol) polarization free energy of solvation -69.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds