Wall clock time and date at job start Sat Apr 11 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46688 * 2 1 4 4 N 1.46499 * 109.47172 * 119.99972 * 2 1 3 5 5 C 1.34772 * 120.00065 * 275.00521 * 4 2 1 6 6 O 1.21622 * 120.00122 * 354.56867 * 5 4 2 7 7 C 1.47235 * 120.00193 * 174.57662 * 5 4 2 8 8 C 1.37009 * 127.18588 * 4.88801 * 7 5 4 9 9 N 1.33325 * 106.37143 * 179.97438 * 8 7 5 10 10 N 1.28515 * 109.43485 * 0.02562 * 9 8 7 11 11 N 1.28715 * 110.64596 * 359.74984 * 10 9 8 12 12 C 1.46494 * 126.04027 * 180.26388 * 11 10 9 13 13 C 1.53002 * 109.47327 * 240.00450 * 2 1 3 14 14 H 1.09000 * 109.46427 * 299.99740 * 13 2 1 15 15 C 1.52999 * 109.46865 * 180.02562 * 13 2 1 16 16 N 1.46499 * 109.47385 * 59.99652 * 13 2 1 17 17 C 1.34777 * 119.99782 * 205.00188 * 16 13 2 18 18 O 1.21280 * 120.00464 * 0.02562 * 17 16 13 19 19 C 1.50700 * 119.99332 * 180.02562 * 17 16 13 20 20 S 1.81008 * 109.46811 * 180.02562 * 19 17 16 21 21 C 1.76201 * 99.99933 * 180.02562 * 20 19 17 22 22 H 1.07994 * 120.00058 * 359.97438 * 21 20 19 23 23 C 1.38799 * 119.99602 * 179.97438 * 21 20 19 24 24 N 1.31626 * 120.00446 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99757 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47224 * 89.99787 * 25 23 21 27 27 H 1.48502 * 109.46981 * 209.99751 * 25 23 21 28 28 H 1.48502 * 109.46903 * 329.99572 * 25 23 21 29 29 H 1.08997 * 109.46644 * 60.00252 * 1 2 3 30 30 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47284 * 300.00020 * 1 2 3 32 32 H 0.96996 * 119.99669 * 94.99979 * 4 2 1 33 33 H 1.07996 * 126.81653 * 359.97438 * 8 7 5 34 34 H 1.09000 * 109.47644 * 272.77851 * 12 11 10 35 35 H 1.08997 * 109.47436 * 32.77932 * 12 11 10 36 36 H 1.08997 * 109.46948 * 152.77662 * 12 11 10 37 37 H 1.08997 * 109.47515 * 59.99600 * 15 13 2 38 38 H 1.09001 * 109.46490 * 179.97438 * 15 13 2 39 39 H 1.09000 * 109.47205 * 299.99042 * 15 13 2 40 40 H 0.96996 * 119.99669 * 25.00463 * 16 13 2 41 41 H 1.09005 * 109.47268 * 299.99665 * 19 17 16 42 42 H 1.09000 * 109.47382 * 60.00017 * 19 17 16 43 43 H 0.96996 * 120.00264 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.9529 1.1819 2.3896 7 6 2.5227 -0.7367 3.5862 8 6 2.8643 -2.0585 3.7011 9 7 3.1263 -2.2681 4.9914 10 7 2.9649 -1.1728 5.6440 11 7 2.6086 -0.2217 4.8532 12 6 2.3398 1.1655 5.2398 13 6 2.0401 -0.7212 -1.2493 14 1 1.6768 -1.7488 -1.2493 15 6 3.5701 -0.7217 -1.2489 16 7 1.5518 -0.0306 -2.4455 17 6 1.4231 -0.7029 -3.6064 18 8 1.7111 -1.8798 -3.6608 19 6 0.9213 0.0077 -4.8370 20 16 0.8596 -1.1556 -6.2224 21 6 0.2580 -0.0899 -7.4901 22 1 0.0492 0.9466 -7.2702 23 6 0.0523 -0.5827 -8.7712 24 7 0.3071 -1.8459 -9.0393 25 14 -0.5862 0.5468 -10.1151 26 1 0.5597 1.1839 -10.8122 27 1 -1.3812 -0.2431 -11.0894 28 1 -1.4449 1.5976 -9.5119 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.2490 -1.6317 1.1526 33 1 2.9119 -2.7863 2.9046 34 1 1.2975 1.2626 5.5438 35 1 2.9880 1.4432 6.0709 36 1 2.5338 1.8229 4.3923 37 1 3.9331 -1.2357 -0.3589 38 1 3.9334 -1.2358 -2.1387 39 1 3.9338 0.3059 -1.2487 40 1 1.3211 0.9106 -2.4019 41 1 -0.0779 0.4002 -4.6478 42 1 1.5942 0.8295 -5.0818 43 1 0.1638 -2.1902 -9.9347 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701114099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:32 Heat of formation + Delta-G solvation = 24.309348 kcal Electronic energy + Delta-G solvation = -26458.062168 eV Core-core repulsion = 22474.107564 eV Total energy + Delta-G solvation = -3983.954604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.79455 -40.48798 -39.36675 -37.04726 -35.20788 -34.29083 -32.46943 -32.40844 -31.02551 -30.13295 -28.63125 -28.47829 -25.52491 -25.05512 -23.87867 -22.92875 -21.33142 -21.17485 -20.35533 -18.81673 -17.89806 -17.34326 -17.31262 -16.82877 -16.05583 -15.96745 -15.47278 -15.15531 -14.90686 -14.83331 -14.57378 -14.17855 -13.99827 -13.84523 -13.70717 -13.50887 -13.29943 -12.83885 -12.70671 -12.55473 -12.51071 -12.10830 -11.95935 -11.66209 -11.61186 -11.09510 -11.06762 -11.03377 -10.79842 -10.75855 -10.66453 -10.07250 -9.85793 -9.74275 -9.50417 -9.11353 -9.03787 -8.28803 -6.54443 -6.25368 -3.96280 0.39388 1.53864 1.80304 2.39779 2.51995 2.98129 3.02689 3.19874 3.25782 3.29582 3.63454 3.77119 3.93003 4.15164 4.17140 4.21530 4.44883 4.52276 4.58323 4.79621 4.87882 5.01850 5.08415 5.10056 5.16763 5.18939 5.32121 5.40706 5.42656 5.52214 5.58769 5.72136 5.82460 5.82795 5.86717 5.92073 6.05198 6.08629 6.48863 6.76067 7.43489 7.55510 7.57368 7.83771 8.31562 8.49710 9.20210 10.82001 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.035765 B = 0.001773 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.709500 B =15792.261394 C =16232.056268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 H 0.099 0.901 4 N -0.701 5.701 5 C 0.602 3.398 6 O -0.533 6.533 7 C -0.073 4.073 8 C 0.005 3.995 9 N -0.272 5.272 10 N -0.058 5.058 11 N -0.253 5.253 12 C 0.072 3.928 13 C 0.138 3.862 14 H 0.095 0.905 15 C -0.165 4.165 16 N -0.731 5.731 17 C 0.536 3.464 18 O -0.514 6.514 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.407 0.593 33 H 0.200 0.800 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.637 6.420 26.550 27.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.033 3.967 3 H 0.117 0.883 4 N -0.353 5.353 5 C 0.386 3.614 6 O -0.410 6.410 7 C -0.208 4.208 8 C -0.156 4.156 9 N -0.134 5.134 10 N -0.039 5.039 11 N -0.050 5.050 12 C -0.068 4.068 13 C 0.032 3.968 14 H 0.113 0.887 15 C -0.224 4.224 16 N -0.386 5.386 17 C 0.323 3.677 18 O -0.388 6.388 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.685 4.685 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.242 0.758 33 H 0.217 0.783 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.138 0.862 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.234 0.766 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.277 4.821 27.805 28.542 hybrid contribution -1.008 2.461 -1.828 3.227 sum 3.269 7.282 25.977 27.176 Atomic orbital electron populations 1.22200 0.93989 1.03128 1.02994 1.21262 0.94864 0.97797 0.82737 0.88270 1.45563 1.66716 1.14415 1.08647 1.16588 0.77026 0.86055 0.81713 1.90807 1.50996 1.13598 1.85559 1.21895 1.14997 0.95424 0.88465 1.23961 1.01656 0.93875 0.96114 1.74944 1.17648 1.16581 1.04242 1.78322 1.15143 0.91564 1.18860 1.47677 1.41101 1.11668 1.04543 1.22635 1.04268 0.75009 1.04917 1.20992 0.94506 0.97866 0.83486 0.88672 1.22214 0.94776 1.02521 1.02852 1.45930 1.69671 1.13965 1.09050 1.20309 0.76663 0.87197 0.83573 1.90706 1.48077 1.15703 1.84274 1.23538 1.03735 1.04939 0.98255 1.85395 1.86408 1.12723 0.98737 1.22862 1.51091 0.98146 0.96356 0.90903 1.24989 0.95069 0.95533 0.97966 1.70008 1.45518 1.13197 1.21522 0.86170 0.78843 0.79957 0.80545 1.20266 1.20739 1.19692 0.90626 0.91783 0.91989 0.75771 0.78328 0.88560 0.87832 0.86200 0.91928 0.91094 0.92298 0.76626 0.89139 0.89137 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.33 37.16 0.35 -0.89 16 2 C 0.14 0.99 2.25 -67.93 -0.15 0.84 16 3 H 0.10 0.77 7.50 -51.93 -0.39 0.38 16 4 N -0.70 -4.26 4.37 -54.94 -0.24 -4.50 16 5 C 0.60 4.70 7.76 -12.61 -0.10 4.60 16 6 O -0.53 -5.35 14.41 5.26 0.08 -5.28 16 7 C -0.07 -0.57 6.98 -82.33 -0.57 -1.15 16 8 C 0.01 0.04 11.55 -17.35 -0.20 -0.16 16 9 N -0.27 -2.80 12.35 30.47 0.38 -2.42 16 10 N -0.06 -0.58 13.14 60.35 0.79 0.21 16 11 N -0.25 -2.05 3.79 -64.12 -0.24 -2.30 16 12 C 0.07 0.34 11.04 59.84 0.66 1.00 16 13 C 0.14 1.25 2.21 -67.93 -0.15 1.10 16 14 H 0.10 0.99 7.58 -51.93 -0.39 0.59 16 15 C -0.17 -1.48 9.33 37.16 0.35 -1.13 16 16 N -0.73 -8.09 4.38 -53.81 -0.24 -8.32 16 17 C 0.54 8.90 7.81 -10.99 -0.09 8.82 16 18 O -0.51 -10.54 15.52 5.56 0.09 -10.45 16 19 C -0.15 -2.88 6.16 36.01 0.22 -2.66 16 20 S -0.06 -1.54 20.57 -107.50 -2.21 -3.76 16 21 C -0.54 -14.88 9.50 30.94 0.29 -14.58 16 22 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 24 N -0.87 -25.66 13.22 55.49 0.73 -24.92 16 25 Si 0.92 21.00 29.55 -169.99 -5.02 15.97 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 29 H 0.07 0.57 7.44 -51.93 -0.39 0.19 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.41 1.62 7.42 -40.82 -0.30 1.31 16 33 H 0.20 0.68 7.56 -52.49 -0.40 0.28 16 34 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.12 0.62 6.23 -51.93 -0.32 0.30 16 37 H 0.06 0.43 7.44 -51.93 -0.39 0.04 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.40 3.40 8.39 -40.82 -0.34 3.06 16 41 H 0.09 1.55 8.14 -51.91 -0.42 1.13 16 42 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 43 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 382.86 15.07 5.77 5.77 Total: -1.00 -36.80 382.86 -5.46 -42.26 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.85 Total: -0.01 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 0.51 Total: -2.25 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 1.18 Total: -42.25 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.16 Total: -15.73 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.80 -5.46 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701114099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.568 kcal (2) G-P(sol) polarization free energy of solvation -36.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds