Wall clock time and date at job start Sat Apr 11 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46688 * 2 1 4 4 N 1.46499 * 109.47172 * 119.99972 * 2 1 3 5 5 C 1.34772 * 120.00065 * 275.00521 * 4 2 1 6 6 O 1.21622 * 120.00122 * 354.56867 * 5 4 2 7 7 C 1.47235 * 120.00193 * 174.57662 * 5 4 2 8 8 C 1.37009 * 127.18588 * 4.88801 * 7 5 4 9 9 N 1.33325 * 106.37143 * 179.97438 * 8 7 5 10 10 N 1.28515 * 109.43485 * 0.02562 * 9 8 7 11 11 N 1.28715 * 110.64596 * 359.74984 * 10 9 8 12 12 C 1.46494 * 126.04027 * 180.26388 * 11 10 9 13 13 C 1.53002 * 109.47327 * 240.00450 * 2 1 3 14 14 H 1.09000 * 109.46427 * 299.99740 * 13 2 1 15 15 C 1.52999 * 109.46865 * 180.02562 * 13 2 1 16 16 N 1.46499 * 109.47385 * 59.99652 * 13 2 1 17 17 C 1.34777 * 119.99782 * 205.00188 * 16 13 2 18 18 O 1.21280 * 120.00464 * 0.02562 * 17 16 13 19 19 C 1.50700 * 119.99332 * 180.02562 * 17 16 13 20 20 S 1.81008 * 109.46811 * 180.02562 * 19 17 16 21 21 C 1.76201 * 99.99933 * 180.02562 * 20 19 17 22 22 H 1.07994 * 120.00058 * 359.97438 * 21 20 19 23 23 C 1.38799 * 119.99602 * 179.97438 * 21 20 19 24 24 N 1.31626 * 120.00446 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99757 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47224 * 89.99787 * 25 23 21 27 27 H 1.48502 * 109.46981 * 209.99751 * 25 23 21 28 28 H 1.48502 * 109.46903 * 329.99572 * 25 23 21 29 29 H 1.08997 * 109.46644 * 60.00252 * 1 2 3 30 30 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47284 * 300.00020 * 1 2 3 32 32 H 0.96996 * 119.99669 * 94.99979 * 4 2 1 33 33 H 1.07996 * 126.81653 * 359.97438 * 8 7 5 34 34 H 1.09000 * 109.47644 * 272.77851 * 12 11 10 35 35 H 1.08997 * 109.47436 * 32.77932 * 12 11 10 36 36 H 1.08997 * 109.46948 * 152.77662 * 12 11 10 37 37 H 1.08997 * 109.47515 * 59.99600 * 15 13 2 38 38 H 1.09001 * 109.46490 * 179.97438 * 15 13 2 39 39 H 1.09000 * 109.47205 * 299.99042 * 15 13 2 40 40 H 0.96996 * 119.99669 * 25.00463 * 16 13 2 41 41 H 1.09005 * 109.47268 * 299.99665 * 19 17 16 42 42 H 1.09000 * 109.47382 * 60.00017 * 19 17 16 43 43 H 0.96996 * 120.00264 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.9529 1.1819 2.3896 7 6 2.5227 -0.7367 3.5862 8 6 2.8643 -2.0585 3.7011 9 7 3.1263 -2.2681 4.9914 10 7 2.9649 -1.1728 5.6440 11 7 2.6086 -0.2217 4.8532 12 6 2.3398 1.1655 5.2398 13 6 2.0401 -0.7212 -1.2493 14 1 1.6768 -1.7488 -1.2493 15 6 3.5701 -0.7217 -1.2489 16 7 1.5518 -0.0306 -2.4455 17 6 1.4231 -0.7029 -3.6064 18 8 1.7111 -1.8798 -3.6608 19 6 0.9213 0.0077 -4.8370 20 16 0.8596 -1.1556 -6.2224 21 6 0.2580 -0.0899 -7.4901 22 1 0.0492 0.9466 -7.2702 23 6 0.0523 -0.5827 -8.7712 24 7 0.3071 -1.8459 -9.0393 25 14 -0.5862 0.5468 -10.1151 26 1 0.5597 1.1839 -10.8122 27 1 -1.3812 -0.2431 -11.0894 28 1 -1.4449 1.5976 -9.5119 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.2490 -1.6317 1.1526 33 1 2.9119 -2.7863 2.9046 34 1 1.2975 1.2626 5.5438 35 1 2.9880 1.4432 6.0709 36 1 2.5338 1.8229 4.3923 37 1 3.9331 -1.2357 -0.3589 38 1 3.9334 -1.2358 -2.1387 39 1 3.9338 0.3059 -1.2487 40 1 1.3211 0.9106 -2.4019 41 1 -0.0779 0.4002 -4.6478 42 1 1.5942 0.8295 -5.0818 43 1 0.1638 -2.1902 -9.9347 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701114099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:31 Heat of formation + Delta-G solvation = -4.270589 kcal Electronic energy + Delta-G solvation = -26459.301487 eV Core-core repulsion = 22474.107564 eV Total energy + Delta-G solvation = -3985.193923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.40008 -41.26523 -40.44416 -37.93032 -35.82662 -35.12886 -34.56460 -33.18389 -32.00090 -30.79252 -29.84513 -29.00846 -27.63420 -25.67212 -24.60041 -23.59304 -22.14565 -21.85619 -21.39854 -19.89368 -19.32170 -18.08014 -17.91778 -17.85336 -17.03640 -16.89743 -16.85727 -16.40259 -16.13010 -15.82898 -15.46094 -15.22177 -14.95320 -14.72920 -14.46747 -14.34023 -14.26741 -13.91132 -13.76748 -13.37828 -13.21053 -13.16738 -13.13629 -12.88552 -12.69962 -12.59168 -12.48499 -12.22012 -11.79598 -11.68275 -11.39106 -11.27270 -11.12709 -10.92142 -10.69537 -10.38684 -10.24375 -10.05411 -8.63144 -8.33103 -6.10013 -0.19620 1.00087 1.17617 1.29093 1.43265 1.48017 1.57484 1.65380 1.86407 1.92680 2.28743 2.44546 3.01255 3.22653 3.34627 3.38677 3.44794 3.69817 3.88135 3.99920 4.00967 4.12380 4.21329 4.34412 4.43131 4.48857 4.53894 4.56323 4.61143 4.71988 4.74656 4.87600 4.92144 4.97840 5.23402 5.25414 5.28446 5.29737 5.44095 5.50907 6.21613 6.22801 6.51080 6.87262 7.08817 7.21414 7.27306 8.75821 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.035765 B = 0.001773 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.709500 B =15792.261394 C =16232.056268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.152 3.848 3 H 0.102 0.898 4 N -0.690 5.690 5 C 0.609 3.391 6 O -0.555 6.555 7 C -0.080 4.080 8 C 0.012 3.988 9 N -0.305 5.305 10 N -0.081 5.081 11 N -0.251 5.251 12 C 0.065 3.935 13 C 0.140 3.860 14 H 0.086 0.914 15 C -0.162 4.162 16 N -0.706 5.706 17 C 0.541 3.459 18 O -0.558 6.558 19 C -0.132 4.132 20 S -0.149 6.149 21 C -0.546 4.546 22 H 0.083 0.917 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.996 3.004 26 H -0.269 1.269 27 H -0.279 1.279 28 H -0.258 1.258 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.419 0.581 33 H 0.233 0.767 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.086 0.914 38 H 0.041 0.959 39 H 0.066 0.934 40 H 0.416 0.584 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.275 8.403 27.319 28.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.047 3.953 3 H 0.120 0.880 4 N -0.343 5.343 5 C 0.393 3.607 6 O -0.433 6.433 7 C -0.215 4.215 8 C -0.149 4.149 9 N -0.166 5.166 10 N -0.062 5.062 11 N -0.049 5.049 12 C -0.074 4.074 13 C 0.035 3.965 14 H 0.105 0.895 15 C -0.220 4.220 16 N -0.360 5.360 17 C 0.327 3.673 18 O -0.436 6.436 19 C -0.283 4.283 20 S 0.079 5.921 21 C -0.694 4.694 22 H 0.101 0.899 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.818 3.182 26 H -0.194 1.194 27 H -0.204 1.204 28 H -0.182 1.182 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.257 0.743 33 H 0.250 0.750 34 H 0.128 0.872 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.105 0.895 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.253 0.747 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.921 6.835 28.633 29.697 hybrid contribution -0.872 1.895 -1.933 2.844 sum 3.048 8.730 26.700 28.256 Atomic orbital electron populations 1.22185 0.93927 1.03037 1.03003 1.21043 0.94685 0.97583 0.81999 0.87985 1.45416 1.66079 1.14943 1.07813 1.16521 0.76627 0.85669 0.81867 1.90804 1.52120 1.14541 1.85850 1.21993 1.15418 0.95682 0.88436 1.24552 1.00101 0.94352 0.95918 1.74909 1.18935 1.17132 1.05644 1.78276 1.16318 0.92092 1.19518 1.47977 1.40017 1.12295 1.04570 1.22880 1.05601 0.73456 1.05444 1.21079 0.94796 0.97483 0.83160 0.89544 1.22175 0.94230 1.02932 1.02644 1.45630 1.67824 1.14572 1.08016 1.19919 0.76538 0.86512 0.84334 1.90701 1.50349 1.17529 1.85002 1.23390 1.05622 1.03232 0.96073 1.85542 1.86749 1.17116 1.02736 1.23212 1.50794 0.98500 0.96887 0.89932 1.26088 0.95153 0.97130 1.00734 1.70171 1.46940 1.15402 1.22193 0.84991 0.78414 0.77833 0.76984 1.19432 1.20426 1.18206 0.90522 0.91946 0.92105 0.74347 0.75032 0.87212 0.86048 0.86522 0.89503 0.93987 0.91543 0.74666 0.87131 0.87321 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.33 71.98 0.67 -1.40 16 2 C 0.15 1.79 2.25 44.99 0.10 1.89 16 3 H 0.10 1.26 7.50 -2.39 -0.02 1.25 16 4 N -0.69 -6.57 4.37 -445.99 -1.95 -8.52 16 5 C 0.61 8.16 7.76 86.61 0.67 8.83 16 6 O -0.56 -10.02 14.41 -4.10 -0.06 -10.08 16 7 C -0.08 -1.11 6.98 40.41 0.28 -0.83 16 8 C 0.01 0.16 11.55 84.18 0.97 1.13 16 9 N -0.30 -6.00 12.35 -57.50 -0.71 -6.71 16 10 N -0.08 -1.59 13.14 37.02 0.49 -1.10 16 11 N -0.25 -3.78 3.79 -356.78 -1.35 -5.13 16 12 C 0.07 0.53 11.04 127.77 1.41 1.94 16 13 C 0.14 2.26 2.21 44.99 0.10 2.36 16 14 H 0.09 1.65 7.58 -2.39 -0.02 1.63 16 15 C -0.16 -2.57 9.33 71.98 0.67 -1.90 16 16 N -0.71 -14.15 4.38 -442.53 -1.94 -16.09 16 17 C 0.54 17.46 7.81 87.66 0.68 18.15 16 18 O -0.56 -23.09 15.52 -3.03 -0.05 -23.14 16 19 C -0.13 -4.80 6.16 71.24 0.44 -4.36 16 20 S -0.15 -7.91 20.57 -56.49 -1.16 -9.07 16 21 C -0.55 -30.31 9.50 67.95 0.65 -29.66 16 22 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 23 C 0.01 0.77 5.49 84.86 0.47 1.23 16 24 N -0.91 -54.92 13.22 21.65 0.29 -54.63 16 25 Si 1.00 42.72 29.55 68.60 2.03 44.75 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 28 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 29 H 0.08 0.96 7.44 -2.39 -0.02 0.95 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.42 2.10 7.42 -92.71 -0.69 1.41 16 33 H 0.23 0.94 7.56 -2.91 -0.02 0.91 16 34 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.12 1.07 6.23 -2.39 -0.01 1.05 16 37 H 0.09 0.96 7.44 -2.39 -0.02 0.94 16 38 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.42 5.81 8.39 -92.71 -0.78 5.03 16 41 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 42 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 43 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -82.26 382.86 2.29 -79.97 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -0.40 Total: 12.37 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 7.12 Total: -2.62 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -5.18 Total: -92.18 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.11 Total: -33.22 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: -7.91 SS G_CDS: -1.16 Total: -9.07 kcal Total: -82.26 2.29 -79.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701114099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.701 kcal (2) G-P(sol) polarization free energy of solvation -82.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds