Wall clock time and date at job start Sat Apr 11 2020 06:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47436 * 2 1 4 4 C 1.46495 * 119.99903 * 262.58846 * 3 2 1 5 5 C 1.52999 * 109.47372 * 269.99646 * 4 3 2 6 6 C 1.53002 * 109.47134 * 180.02562 * 5 4 3 7 7 N 1.46496 * 109.46957 * 180.02562 * 6 5 4 8 8 C 1.34778 * 119.99970 * 180.02562 * 7 6 5 9 9 O 1.21285 * 120.00054 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.00087 * 179.97438 * 8 7 6 11 11 S 1.81004 * 109.47207 * 179.97438 * 10 8 7 12 12 C 1.76192 * 99.99934 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00378 * 359.97438 * 12 11 10 14 14 C 1.38802 * 119.99724 * 179.97438 * 12 11 10 15 15 N 1.31624 * 120.00276 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99874 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46720 * 60.00521 * 16 14 12 18 18 H 1.48499 * 109.47351 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47161 * 300.00707 * 16 14 12 20 20 C 1.34775 * 119.99545 * 82.58856 * 3 2 1 21 21 O 1.21620 * 119.99498 * 181.40535 * 20 3 2 22 22 C 1.47231 * 120.00210 * 1.40604 * 20 3 2 23 23 C 1.37014 * 127.18657 * 171.24576 * 22 20 3 24 24 N 1.33318 * 106.36811 * 180.02562 * 23 22 20 25 25 N 1.28513 * 109.44195 * 0.02562 * 24 23 22 26 26 N 1.28711 * 110.63676 * 359.97438 * 25 24 23 27 27 H 0.97003 * 126.03405 * 180.02562 * 26 25 24 28 28 H 1.09004 * 109.47252 * 59.99455 * 1 2 3 29 29 H 1.08992 * 109.47384 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46923 * 299.99821 * 1 2 3 31 31 H 1.09007 * 109.46923 * 240.00179 * 2 1 3 32 32 H 1.09004 * 109.47252 * 120.00545 * 2 1 3 33 33 H 1.08999 * 109.47555 * 30.00561 * 4 3 2 34 34 H 1.09003 * 109.46822 * 149.99792 * 4 3 2 35 35 H 1.08992 * 109.47138 * 300.00365 * 5 4 3 36 36 H 1.08998 * 109.46566 * 60.00263 * 5 4 3 37 37 H 1.09004 * 109.46813 * 300.00351 * 6 5 4 38 38 H 1.09003 * 109.47183 * 60.00071 * 6 5 4 39 39 H 0.97001 * 120.00341 * 359.97438 * 7 6 5 40 40 H 1.09001 * 109.46777 * 299.99389 * 10 8 7 41 41 H 1.09003 * 109.47362 * 59.99578 * 10 8 7 42 42 H 0.97005 * 120.00216 * 179.97438 * 15 14 12 43 43 H 1.07999 * 126.81486 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4169 2.0172 -1.2581 5 6 3.9042 1.7618 -1.5100 6 6 4.3205 2.4266 -2.8237 7 7 5.7445 2.1816 -3.0652 8 6 6.3354 2.6762 -4.1709 9 8 5.6881 3.3239 -4.9663 10 6 7.8003 2.4247 -4.4191 11 16 8.2928 3.2110 -5.9732 12 6 9.9984 2.7708 -6.0118 13 1 10.4225 2.1824 -5.2116 14 6 10.7970 3.1802 -7.0707 15 7 10.2802 3.8977 -8.0457 16 14 12.6055 2.7141 -7.1113 17 1 12.7353 1.2348 -7.1151 18 1 13.2325 3.2696 -8.3375 19 1 13.2863 3.2677 -5.9134 20 6 2.1011 2.0667 1.1575 21 8 2.4823 3.2216 1.1543 22 6 1.7299 1.4174 2.4257 23 6 1.9113 1.9087 3.6918 24 7 1.4284 0.9871 4.5253 25 7 0.9778 -0.0079 3.8481 26 7 1.1319 0.1950 2.5865 27 1 0.8706 -0.4105 1.8751 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.8324 1.5991 -2.0777 34 1 2.2381 3.0906 -1.1951 35 1 4.4885 2.1800 -0.6905 36 1 4.0829 0.6884 -1.5730 37 1 3.7360 2.0088 -3.6435 38 1 4.1418 3.5001 -2.7603 39 1 6.2623 1.6640 -2.4289 40 1 8.3846 2.8423 -3.5991 41 1 7.9790 1.3513 -4.4828 42 1 10.8384 4.1841 -8.7856 43 1 2.3571 2.8549 3.9610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703687370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:40 Heat of formation + Delta-G solvation = 44.178474 kcal Electronic energy + Delta-G solvation = -25964.967384 eV Core-core repulsion = 21981.874370 eV Total energy + Delta-G solvation = -3983.093014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.05746 -40.58157 -39.19544 -37.36783 -35.67707 -34.15209 -32.71814 -32.44290 -31.82552 -30.96313 -29.14913 -26.35524 -25.47767 -24.88316 -23.98082 -23.39665 -22.24084 -21.18776 -20.32135 -18.71468 -17.88145 -17.75642 -17.23220 -16.94566 -16.32626 -15.87286 -15.72822 -15.63051 -15.26625 -14.83600 -14.81015 -14.58845 -14.24781 -13.95800 -13.67290 -13.25305 -13.11833 -12.94802 -12.85650 -12.66186 -12.50810 -12.35169 -11.96650 -11.90145 -11.76639 -11.24896 -11.23079 -11.06195 -11.04979 -10.80677 -10.77367 -10.13265 -9.84670 -9.65021 -9.38639 -9.08050 -8.94649 -8.26179 -6.51936 -6.22966 -3.93859 0.27671 1.71806 1.76465 2.10370 2.41174 3.01105 3.06021 3.22377 3.26479 3.29814 3.40946 3.67609 3.71695 3.92277 4.02793 4.19116 4.29373 4.34835 4.46499 4.54805 4.59020 4.68234 4.69930 4.76966 4.97024 5.12083 5.14703 5.16602 5.21853 5.39917 5.41859 5.55366 5.66563 5.73234 5.87065 5.87511 5.92871 6.11274 6.43391 6.55021 7.26556 7.57714 7.64850 7.68194 8.33478 8.56746 9.22174 10.84368 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.025206 B = 0.001602 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.592798 B =17477.066558 C =17903.293396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.081 3.919 3 N -0.606 5.606 4 C 0.119 3.881 5 C -0.148 4.148 6 C 0.125 3.875 7 N -0.740 5.740 8 C 0.532 3.468 9 O -0.517 6.517 10 C -0.154 4.154 11 S -0.060 6.060 12 C -0.537 4.537 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.595 3.405 21 O -0.503 6.503 22 C -0.069 4.069 23 C 0.036 3.964 24 N -0.268 5.268 25 N -0.051 5.051 26 N -0.384 5.384 27 H 0.454 0.546 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.398 0.602 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.269 0.731 43 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.510 -11.279 20.274 31.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.043 4.043 3 N -0.339 5.339 4 C -0.003 4.003 5 C -0.187 4.187 6 C 0.000 4.000 7 N -0.394 5.394 8 C 0.318 3.682 9 O -0.391 6.391 10 C -0.304 4.304 11 S 0.167 5.833 12 C -0.685 4.685 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.199 1.199 20 C 0.380 3.620 21 O -0.375 6.375 22 C -0.202 4.202 23 C -0.123 4.123 24 N -0.133 5.133 25 N -0.033 5.033 26 N -0.122 5.122 27 H 0.312 0.688 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.126 0.874 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.232 0.768 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -22.850 -10.341 19.889 32.010 hybrid contribution 2.364 -1.137 -0.035 2.624 sum -20.486 -11.478 19.854 30.751 Atomic orbital electron populations 1.22580 0.94926 1.03973 1.04320 1.22029 0.94924 0.83067 1.04322 1.47865 1.64880 1.13781 1.07424 1.21518 0.94751 1.00260 0.83788 1.22157 0.96500 1.01658 0.98337 1.21116 0.82290 1.00839 0.95770 1.45968 1.10399 1.57766 1.25310 1.20317 0.89273 0.78343 0.80278 1.90706 1.65348 1.38154 1.44907 1.23535 0.94081 1.05525 1.07307 1.85392 1.09884 1.69162 1.18876 1.22827 0.94624 1.40065 1.11006 0.90973 1.24990 0.99336 0.94616 0.94603 1.70004 1.36484 1.34120 1.09649 0.86224 0.82725 0.78829 0.77721 1.19954 1.20789 1.19927 1.16828 0.78168 0.85574 0.81390 1.90917 1.45641 1.15448 1.85484 1.22344 1.09926 0.89864 0.98114 1.24004 1.00274 1.01073 0.86998 1.75030 1.12565 0.98793 1.26934 1.78213 1.17134 1.20197 0.87776 1.47062 1.40575 1.15215 1.09330 0.68804 0.89779 0.89777 0.92205 0.87410 0.90954 0.89274 0.88514 0.90512 0.91017 0.91460 0.91235 0.76841 0.89189 0.89247 0.92109 0.77733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.20 8.90 37.16 0.33 0.13 16 2 C 0.08 0.14 5.65 -4.04 -0.02 0.12 16 3 N -0.61 -3.01 2.49 -175.03 -0.44 -3.45 16 4 C 0.12 0.64 5.38 -4.04 -0.02 0.62 16 5 C -0.15 -0.96 5.65 -26.73 -0.15 -1.11 16 6 C 0.12 1.25 5.67 -4.04 -0.02 1.23 16 7 N -0.74 -9.21 5.56 -60.29 -0.33 -9.55 16 8 C 0.53 9.65 7.85 -10.99 -0.09 9.57 16 9 O -0.52 -11.52 15.86 5.55 0.09 -11.43 16 10 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 11 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 12 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 13 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 14 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 15 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 16 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 C 0.60 4.59 7.60 -12.61 -0.10 4.50 16 21 O -0.50 -5.62 16.50 5.26 0.09 -5.53 16 22 C -0.07 -0.48 6.52 -82.33 -0.54 -1.02 16 23 C 0.04 0.28 11.88 -17.35 -0.21 0.08 16 24 N -0.27 -2.53 12.35 30.47 0.38 -2.16 16 25 N -0.05 -0.42 13.35 60.35 0.81 0.38 16 26 N -0.38 -2.09 5.22 33.31 0.17 -1.92 16 27 H 0.45 1.10 3.72 -190.33 -0.71 0.39 16 28 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.08 -0.07 8.14 -51.93 -0.42 -0.50 16 30 H 0.06 0.13 6.48 -51.93 -0.34 -0.20 16 31 H 0.11 0.03 8.02 -51.93 -0.42 -0.38 16 32 H 0.07 0.09 5.10 -51.93 -0.26 -0.18 16 33 H 0.09 0.30 8.07 -51.93 -0.42 -0.12 16 34 H 0.10 0.68 7.40 -51.93 -0.38 0.30 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.40 3.82 8.47 -40.82 -0.35 3.47 16 40 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 41 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.21 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 378.83 15.07 5.71 5.71 Total: -1.00 -38.24 378.83 -6.65 -44.89 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -6.22 Total: -2.44 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -0.39 Total: -1.64 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 1.32 Total: -41.99 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: 0.17 Total: -16.96 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.24 -6.65 -44.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703687370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.068 kcal (2) G-P(sol) polarization free energy of solvation -38.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds