Wall clock time and date at job start Sat Apr 11 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47332 * 2 1 4 4 C 1.46502 * 120.00060 * 89.99657 * 3 2 1 5 5 C 1.52995 * 109.47340 * 270.00420 * 4 3 2 6 6 C 1.52995 * 109.47226 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.47403 * 179.97438 * 6 5 4 8 8 C 1.34775 * 120.00236 * 179.97438 * 7 6 5 9 9 O 1.21618 * 120.00073 * 0.02562 * 8 7 6 10 10 C 1.47232 * 120.00331 * 179.97438 * 8 7 6 11 11 C 1.37004 * 127.19363 * 180.02562 * 10 8 7 12 12 N 1.33315 * 106.37501 * 180.02562 * 11 10 8 13 13 N 1.28514 * 109.44158 * 359.97438 * 12 11 10 14 14 N 1.28724 * 110.63693 * 0.02562 * 13 12 11 15 15 H 0.96991 * 126.03722 * 179.97438 * 14 13 12 16 16 C 1.34776 * 119.99709 * 270.00477 * 3 2 1 17 17 O 1.21281 * 119.99704 * 180.02562 * 16 3 2 18 18 C 1.50693 * 120.00232 * 359.97438 * 16 3 2 19 19 S 1.81008 * 109.47029 * 180.02562 * 18 16 3 20 20 C 1.76200 * 99.99809 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00546 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99907 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00190 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00175 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47215 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47352 * 120.00094 * 24 22 20 27 27 H 1.48500 * 109.47444 * 240.00527 * 24 22 20 28 28 H 1.09001 * 109.47152 * 300.00222 * 1 2 3 29 29 H 1.08997 * 109.46968 * 59.99772 * 1 2 3 30 30 H 1.09001 * 109.47350 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47152 * 239.99778 * 2 1 3 32 32 H 1.09003 * 109.47093 * 119.99826 * 2 1 3 33 33 H 1.09003 * 109.46654 * 150.00068 * 4 3 2 34 34 H 1.09001 * 109.46911 * 30.00202 * 4 3 2 35 35 H 1.09007 * 109.47427 * 59.99706 * 5 4 3 36 36 H 1.09001 * 109.46940 * 299.99764 * 5 4 3 37 37 H 1.08996 * 109.47721 * 59.99604 * 6 5 4 38 38 H 1.09005 * 109.47236 * 299.99782 * 6 5 4 39 39 H 0.97001 * 119.99684 * 0.02562 * 7 6 5 40 40 H 1.08000 * 126.80852 * 359.97438 * 11 10 8 41 41 H 1.08990 * 109.47597 * 300.00550 * 18 16 3 42 42 H 1.09003 * 109.46749 * 60.01299 * 18 16 3 43 43 H 0.96999 * 120.00153 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 0.9876 2.7931 1.7104 6 6 1.2427 3.5148 3.0351 7 7 0.0221 4.2060 3.4577 8 6 0.0108 4.9128 4.6052 9 8 1.0140 4.9773 5.2896 10 6 -1.2158 5.6078 5.0297 11 6 -1.3912 6.3627 6.1595 12 7 -2.6528 6.7925 6.1322 13 7 -3.2328 6.3498 5.0743 14 7 -2.4206 5.6347 4.3772 15 1 -2.6252 5.1928 3.5384 16 6 2.2429 2.0165 -1.1672 17 8 2.6477 3.1598 -1.1672 18 6 1.9922 1.3060 -2.4723 19 16 2.3848 2.4148 -3.8480 20 6 2.0111 1.3588 -5.2082 21 1 1.6552 0.3548 -5.0305 22 6 2.1731 1.8178 -6.5080 23 7 2.6064 3.0417 -6.7247 24 14 1.7763 0.6987 -7.9500 25 1 1.3101 -0.6167 -7.4422 26 1 0.7084 1.3162 -8.7768 27 1 2.9943 0.5067 -8.7776 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.0645 2.7985 1.1383 34 1 2.5506 1.3452 2.0284 35 1 0.1856 2.0664 1.8407 36 1 0.6995 3.5198 0.9508 37 1 2.0445 4.2415 2.9044 38 1 1.5311 2.7885 3.7950 39 1 -0.7782 4.1542 2.9120 40 1 -0.6539 6.5679 6.9215 41 1 2.6226 0.4187 -2.5299 42 1 0.9443 1.0117 -2.5302 43 1 2.7199 3.3623 -7.6331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703717055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:42 Heat of formation + Delta-G solvation = 19.291362 kcal Electronic energy + Delta-G solvation = -26047.742683 eV Core-core repulsion = 22063.570482 eV Total energy + Delta-G solvation = -3984.172200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.87174 -40.15132 -39.68763 -36.56862 -35.62827 -34.16213 -32.79700 -32.49065 -31.80209 -30.25962 -29.31346 -26.25494 -25.51780 -24.41957 -23.43884 -23.31127 -22.18299 -21.54932 -19.75956 -19.25575 -17.79516 -17.25272 -16.99605 -16.92147 -16.66553 -16.03507 -15.75651 -15.31054 -14.86397 -14.83483 -14.65869 -14.55309 -13.99760 -13.87676 -13.48449 -13.40314 -12.85383 -12.72700 -12.61344 -12.41141 -12.33799 -11.95192 -11.81886 -11.72396 -11.44449 -11.30099 -11.12498 -11.07657 -10.90428 -10.80804 -10.79022 -10.10932 -9.85807 -9.70363 -9.47230 -9.13366 -8.73680 -8.29397 -6.57179 -6.27870 -3.98930 0.33506 1.77896 1.86751 2.33159 2.52633 2.84069 2.94308 3.16635 3.20645 3.26019 3.51126 3.76664 4.09647 4.14131 4.40921 4.49128 4.55053 4.62132 4.75730 4.78381 4.83335 5.04586 5.07809 5.13865 5.19996 5.27211 5.39881 5.45409 5.47978 5.52899 5.65704 5.67955 5.77051 5.83313 5.87482 5.96076 6.00685 6.11722 6.54438 6.70567 7.40620 7.40955 7.53831 7.72295 8.29133 8.44489 9.17691 10.79552 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.017068 B = 0.001870 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.060716 B =14967.572131 C =15529.041977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.106 3.894 3 N -0.621 5.621 4 C 0.123 3.877 5 C -0.152 4.152 6 C 0.122 3.878 7 N -0.722 5.722 8 C 0.596 3.404 9 O -0.511 6.511 10 C -0.068 4.068 11 C 0.035 3.965 12 N -0.269 5.269 13 N -0.043 5.043 14 N -0.374 5.374 15 H 0.451 0.549 16 C 0.534 3.466 17 O -0.513 6.513 18 C -0.151 4.151 19 S -0.063 6.063 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.279 1.279 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.397 0.603 40 H 0.206 0.794 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.853 -3.794 22.487 24.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.017 4.017 3 N -0.356 5.356 4 C -0.001 4.001 5 C -0.191 4.191 6 C -0.001 4.001 7 N -0.374 5.374 8 C 0.379 3.621 9 O -0.384 6.384 10 C -0.202 4.202 11 C -0.124 4.124 12 N -0.134 5.134 13 N -0.026 5.026 14 N -0.102 5.102 15 H 0.298 0.702 16 C 0.322 3.678 17 O -0.387 6.387 18 C -0.301 4.301 19 S 0.164 5.836 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.205 1.205 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.230 0.770 40 H 0.223 0.777 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.797 -1.306 23.062 24.380 hybrid contribution -0.333 -2.865 -1.933 3.472 sum -8.130 -4.171 21.129 23.020 Atomic orbital electron populations 1.22298 0.96100 1.02272 1.02575 1.21566 0.94411 0.82405 1.03355 1.47995 1.67916 1.14258 1.05456 1.21205 0.96745 0.96969 0.85204 1.22300 1.00105 1.00487 0.96200 1.21422 0.86199 0.96397 0.96096 1.45889 1.15975 1.52155 1.23370 1.16723 0.85524 0.78559 0.81337 1.90898 1.32520 1.61238 1.53698 1.22398 0.89022 1.09978 0.98824 1.23964 0.94987 0.96044 0.97426 1.75037 1.06406 1.19841 1.12133 1.78270 1.17552 1.06064 1.00666 1.45634 1.08033 1.35507 1.20987 0.70178 1.20371 0.76301 0.86512 0.84636 1.90702 1.43723 1.17492 1.86809 1.23582 1.04721 1.04567 0.97256 1.85408 1.86885 1.17894 0.93422 1.22885 1.51756 1.01517 0.92162 0.90897 1.24997 0.94643 0.95548 0.98413 1.70021 1.42915 1.15645 1.21619 0.86121 0.78219 0.80056 0.81121 1.19613 1.20557 1.20524 0.92508 0.91905 0.91593 0.89842 0.90557 0.89356 0.90464 0.90889 0.90280 0.90267 0.90602 0.76957 0.77741 0.89283 0.89273 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.24 37.16 0.38 -0.99 16 2 C 0.11 0.93 5.98 -4.04 -0.02 0.91 16 3 N -0.62 -7.32 2.47 -173.69 -0.43 -7.74 16 4 C 0.12 1.14 5.45 -4.04 -0.02 1.11 16 5 C -0.15 -1.12 5.65 -26.74 -0.15 -1.27 16 6 C 0.12 0.84 5.67 -4.04 -0.02 0.81 16 7 N -0.72 -4.30 5.55 -61.45 -0.34 -4.64 16 8 C 0.60 4.85 7.81 -12.61 -0.10 4.75 16 9 O -0.51 -5.92 16.92 5.26 0.09 -5.83 16 10 C -0.07 -0.49 7.17 -82.33 -0.59 -1.08 16 11 C 0.04 0.29 11.87 -17.36 -0.21 0.08 16 12 N -0.27 -2.66 12.35 30.47 0.38 -2.29 16 13 N -0.04 -0.38 13.35 60.35 0.81 0.42 16 14 N -0.37 -2.13 6.98 33.31 0.23 -1.90 16 15 H 0.45 0.82 8.32 -190.33 -1.58 -0.76 16 16 C 0.53 9.17 7.69 -10.99 -0.08 9.08 16 17 O -0.51 -10.79 15.44 5.56 0.09 -10.70 16 18 C -0.15 -2.86 4.71 36.00 0.17 -2.69 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.53 -14.78 9.50 30.94 0.29 -14.49 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 23 N -0.87 -25.60 13.22 55.49 0.73 -24.86 16 24 Si 0.92 20.88 29.55 -169.99 -5.02 15.85 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.06 0.38 6.26 -51.93 -0.33 0.06 16 29 H 0.06 0.62 7.22 -51.93 -0.38 0.25 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.79 6.44 -51.93 -0.33 0.46 16 32 H 0.08 0.49 7.89 -51.93 -0.41 0.08 16 33 H 0.09 0.99 7.42 -51.93 -0.39 0.61 16 34 H 0.08 0.51 7.89 -51.93 -0.41 0.10 16 35 H 0.07 0.44 6.26 -51.92 -0.33 0.11 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.40 1.29 7.74 -40.82 -0.32 0.97 16 40 H 0.21 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.09 1.58 7.40 -51.92 -0.38 1.19 16 42 H 0.09 1.56 7.19 -51.92 -0.37 1.19 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 381.72 15.07 5.75 5.75 Total: -1.00 -37.43 381.72 -7.26 -44.69 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -6.88 Total: -3.09 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -0.45 Total: -1.82 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 1.38 Total: -41.00 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.17 Total: -16.53 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.43 -7.26 -44.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703717055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.984 kcal (2) G-P(sol) polarization free energy of solvation -37.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds