Wall clock time and date at job start Sat Apr 11 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08992 * 109.47449 * 2 1 4 4 C 1.53002 * 109.47145 * 239.99672 * 2 1 3 5 5 C 1.52994 * 109.47314 * 175.00248 * 4 2 1 6 6 N 1.46501 * 109.47419 * 180.02562 * 5 4 2 7 7 C 1.34775 * 120.00359 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00015 * 359.97438 * 7 6 5 9 9 C 1.50704 * 120.00100 * 179.97438 * 7 6 5 10 10 S 1.81005 * 109.46831 * 180.02562 * 9 7 6 11 11 C 1.76206 * 99.99582 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00133 * 359.97438 * 11 10 9 13 13 C 1.38801 * 119.99974 * 179.97438 * 11 10 9 14 14 N 1.31630 * 119.99787 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99918 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47098 * 0.02562 * 15 13 11 17 17 H 1.48510 * 109.46624 * 120.00545 * 15 13 11 18 18 H 1.48498 * 109.47161 * 240.00250 * 15 13 11 19 19 N 1.46502 * 109.47070 * 120.00020 * 2 1 3 20 20 C 1.34772 * 119.99840 * 274.99601 * 19 2 1 21 21 O 1.21280 * 120.00185 * 0.02562 * 20 19 2 22 22 C 1.50702 * 120.00188 * 180.02562 * 20 19 2 23 23 C 1.50696 * 109.47272 * 180.02562 * 22 20 19 24 24 N 1.33251 * 125.52599 * 90.00181 * 23 22 20 25 25 C 1.30825 * 109.82850 * 179.97438 * 24 23 22 26 26 N 1.34434 * 108.08133 * 359.97438 * 25 24 23 27 27 H 0.96991 * 126.82624 * 179.73840 * 26 25 24 28 28 N 1.30709 * 125.53091 * 269.99942 * 23 22 20 29 29 H 1.09001 * 109.47384 * 299.99855 * 1 2 3 30 30 H 1.08999 * 109.47480 * 60.00443 * 1 2 3 31 31 H 1.09003 * 109.47570 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47239 * 295.00219 * 4 2 1 33 33 H 1.09000 * 109.46853 * 55.00135 * 4 2 1 34 34 H 1.09005 * 109.47385 * 300.00051 * 5 4 2 35 35 H 1.09000 * 109.47253 * 60.00132 * 5 4 2 36 36 H 0.97002 * 119.99361 * 359.97438 * 6 5 4 37 37 H 1.08994 * 109.46833 * 299.99955 * 9 7 6 38 38 H 1.09000 * 109.47004 * 60.00092 * 9 7 6 39 39 H 0.96999 * 120.00237 * 179.97438 * 14 13 11 40 40 H 0.96998 * 120.00079 * 95.00204 * 19 2 1 41 41 H 1.08999 * 109.46924 * 59.99927 * 22 20 19 42 42 H 1.09001 * 109.47302 * 300.00405 * 22 20 19 43 43 H 1.08002 * 125.96446 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6135 -1.3137 6 7 4.0530 -1.3036 -2.5101 7 6 5.3738 -1.3389 -2.7759 8 8 6.1582 -0.7990 -2.0248 9 6 5.8762 -2.0494 -4.0064 10 16 7.6801 -1.9216 -4.0826 11 6 7.9869 -2.8103 -5.5729 12 1 7.1632 -3.2333 -6.1288 13 6 9.2873 -2.9669 -6.0323 14 7 10.2913 -2.4518 -5.3545 15 14 9.6127 -3.9096 -7.6117 16 1 8.3251 -4.3846 -8.1789 17 1 10.2856 -3.0182 -8.5906 18 1 10.4861 -5.0750 -7.3216 19 7 2.0183 -0.6906 1.1962 20 6 2.1470 -0.0182 2.3571 21 8 1.8582 1.1584 2.4116 22 6 2.6499 -0.7285 3.5875 23 6 2.7000 0.2397 4.7412 24 7 1.7073 0.4745 5.5986 25 6 2.0817 1.3690 6.4768 26 7 3.3452 1.7296 6.1924 27 1 3.8858 2.3785 6.6691 28 7 3.7241 0.9854 5.0632 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7516 -1.7716 -1.2055 33 1 1.6053 -0.2618 -2.1369 34 1 3.8532 0.4368 -1.3574 35 1 3.9993 -1.0730 -0.4259 36 1 3.4256 -1.7351 -3.1110 37 1 5.5882 -3.0997 -3.9624 38 1 5.4411 -1.5902 -4.8941 39 1 11.2001 -2.5615 -5.6753 40 1 2.2490 -1.6318 1.1526 41 1 3.6492 -1.1203 3.3978 42 1 1.9777 -1.5508 3.8326 43 1 1.4809 1.7506 7.2891 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704125599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:44 Heat of formation + Delta-G solvation = 1.475281 kcal Electronic energy + Delta-G solvation = -25650.378234 eV Core-core repulsion = 21665.433470 eV Total energy + Delta-G solvation = -3984.944764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.45008 -40.12204 -39.12923 -36.85340 -34.43071 -33.69983 -32.43046 -32.26743 -31.75002 -30.17101 -29.02953 -28.11942 -25.49500 -23.73318 -23.18335 -22.20299 -21.07149 -20.42096 -20.19303 -18.69983 -17.87469 -17.53629 -16.73072 -16.20402 -16.00789 -15.82897 -15.51973 -15.34006 -15.07725 -14.80635 -14.35849 -14.00398 -13.92330 -13.75889 -13.63915 -13.25026 -13.02349 -12.59116 -12.49230 -12.34697 -12.32716 -12.16304 -11.62368 -11.52140 -11.24180 -11.07166 -11.02009 -10.75591 -10.56452 -10.40809 -10.24498 -9.90457 -9.80766 -9.47142 -9.34955 -9.07957 -8.88883 -8.22869 -6.50008 -6.21851 -3.92376 1.26425 2.27323 2.37372 2.41952 3.00077 3.02533 3.10380 3.21419 3.28010 3.32504 3.69158 3.70325 4.20193 4.24125 4.40883 4.49016 4.56081 4.64808 4.75842 4.99516 5.06553 5.10179 5.13079 5.13439 5.23618 5.32264 5.39902 5.60718 5.63594 5.75752 5.83305 5.87915 5.89640 5.94838 6.00943 6.13513 6.19615 6.59959 6.66162 7.16886 7.59685 7.69876 7.70902 7.93801 8.35265 8.61653 9.23550 10.85638 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018151 B = 0.001722 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.273356 B =16253.787262 C =17488.130291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.139 4.139 5 C 0.120 3.880 6 N -0.740 5.740 7 C 0.530 3.470 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.725 5.725 20 C 0.525 3.475 21 O -0.529 6.529 22 C -0.051 4.051 23 C 0.246 3.754 24 N -0.536 5.536 25 C 0.262 3.738 26 N -0.482 5.482 27 H 0.442 0.558 28 N -0.299 5.299 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.403 0.597 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.060 3.490 20.088 30.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.110 0.890 4 C -0.177 4.177 5 C -0.004 4.004 6 N -0.395 5.395 7 C 0.316 3.684 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.165 5.835 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.378 5.378 20 C 0.310 3.690 21 O -0.404 6.404 22 C -0.093 4.093 23 C -0.037 4.037 24 N -0.264 5.264 25 C -0.037 4.037 26 N -0.200 5.200 27 H 0.288 0.712 28 N -0.128 5.128 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.231 0.769 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.237 0.763 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -21.423 5.095 20.979 30.414 hybrid contribution -0.668 -1.291 -1.627 2.182 sum -22.091 3.803 19.352 29.613 Atomic orbital electron populations 1.22160 0.94754 1.02303 1.02811 1.20881 0.94157 0.97748 0.83009 0.88962 1.22127 0.95432 1.01969 0.98215 1.21264 0.92614 0.98038 0.88459 1.46002 1.07820 1.58629 1.27071 1.20322 0.81499 0.79740 0.86815 1.90714 1.54950 1.44283 1.49084 1.23530 1.06848 1.02533 0.97478 1.85428 0.92191 1.72744 1.33091 1.22913 0.95494 1.40072 1.09868 0.90867 1.24999 0.95059 0.95660 0.97910 1.70029 0.99353 1.42643 1.38239 0.86112 0.78393 0.79262 0.81691 1.19622 1.20573 1.20569 1.46019 1.68054 1.14208 1.09519 1.20160 0.77507 0.87266 0.84083 1.90740 1.49075 1.15851 1.84755 1.19901 1.05518 0.96040 0.87885 1.23266 0.87338 0.96767 0.96338 1.70342 1.30625 1.18874 1.06561 1.26059 0.85429 0.93485 0.98773 1.48095 1.13234 1.34806 1.23912 0.71194 1.78041 1.23433 1.10202 1.01134 0.91883 0.91452 0.92269 0.90437 0.89429 0.91582 0.91551 0.76852 0.89234 0.89238 0.92232 0.76277 0.86088 0.85889 0.76097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.48 37.15 0.35 -0.75 16 2 C 0.15 1.13 2.57 -67.93 -0.17 0.96 16 3 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 4 C -0.14 -0.92 4.87 -26.73 -0.13 -1.05 16 5 C 0.12 1.30 5.56 -4.04 -0.02 1.28 16 6 N -0.74 -9.26 5.56 -60.29 -0.33 -9.59 16 7 C 0.53 9.76 7.85 -10.98 -0.09 9.67 16 8 O -0.52 -11.80 15.86 5.56 0.09 -11.71 16 9 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 10 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 11 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 12 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 15 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 19 N -0.72 -5.36 4.53 -53.81 -0.24 -5.61 16 20 C 0.53 5.36 7.79 -10.99 -0.09 5.27 16 21 O -0.53 -7.70 15.70 5.56 0.09 -7.62 16 22 C -0.05 -0.42 6.33 -29.04 -0.18 -0.60 16 23 C 0.25 2.72 6.63 -156.85 -1.04 1.68 16 24 N -0.54 -5.57 11.19 -11.98 -0.13 -5.70 16 25 C 0.26 1.74 13.13 -90.65 -1.19 0.55 16 26 N -0.48 -3.52 7.45 29.53 0.22 -3.30 16 27 H 0.44 1.55 8.96 -182.34 -1.63 -0.09 16 28 N -0.30 -3.46 12.80 32.42 0.41 -3.05 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.77 7.75 -51.93 -0.40 0.36 16 36 H 0.40 3.67 8.47 -40.82 -0.35 3.32 16 37 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 38 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.40 1.93 8.60 -40.82 -0.35 1.58 16 41 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.22 0.27 8.06 -52.49 -0.42 -0.15 16 LS Contribution 390.06 15.07 5.88 5.88 Total: -1.00 -42.38 390.06 -9.99 -52.36 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -7.32 Total: 0.09 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.14 Total: 1.24 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.66 Total: -52.70 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.18 Total: -19.33 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -42.38 -9.99 -52.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704125599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.840 kcal (2) G-P(sol) polarization free energy of solvation -42.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds