Wall clock time and date at job start Sat Apr 11 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00318 * 2 1 4 4 C 1.52998 * 109.47015 * 269.99983 * 3 2 1 5 5 N 1.46491 * 109.47256 * 179.97438 * 4 3 2 6 6 C 1.34783 * 120.00327 * 179.97438 * 5 4 3 7 7 O 1.21684 * 119.99734 * 0.02562 * 6 5 4 8 8 C 1.46771 * 119.99851 * 180.02562 * 6 5 4 9 9 C 1.41484 * 126.52293 * 359.97438 * 8 6 5 10 10 N 1.30283 * 108.19215 * 180.02562 * 9 8 6 11 11 N 1.39900 * 109.23055 * 359.97438 * 10 9 8 12 12 C 1.46500 * 125.74705 * 180.02562 * 11 10 9 13 13 C 1.34843 * 108.50595 * 0.02562 * 11 10 9 14 14 N 1.38012 * 126.44466 * 180.26268 * 13 11 10 15 15 C 1.34777 * 119.99799 * 179.97438 * 2 1 3 16 16 O 1.21279 * 120.00157 * 179.97438 * 15 2 1 17 17 C 1.50702 * 120.00199 * 0.02562 * 15 2 1 18 18 S 1.80995 * 109.47446 * 179.97438 * 17 15 2 19 19 C 1.76201 * 100.00397 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99609 * 0.02562 * 19 18 17 21 21 C 1.38794 * 120.00347 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99649 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00001 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47055 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47072 * 120.00101 * 23 21 19 26 26 H 1.48500 * 109.46895 * 239.99782 * 23 21 19 27 27 H 1.09003 * 109.47326 * 90.00150 * 1 2 3 28 28 H 1.09005 * 109.47657 * 210.00079 * 1 2 3 29 29 H 1.09003 * 109.47089 * 330.00019 * 1 2 3 30 30 H 1.08991 * 109.47220 * 149.99875 * 3 2 1 31 31 H 1.08999 * 109.46681 * 29.99803 * 3 2 1 32 32 H 1.09004 * 109.47136 * 59.99701 * 4 3 2 33 33 H 1.08997 * 109.47471 * 300.00212 * 4 3 2 34 34 H 0.96999 * 120.00163 * 0.02562 * 5 4 3 35 35 H 1.07997 * 125.90539 * 359.96548 * 9 8 6 36 36 H 1.09000 * 109.47059 * 269.98516 * 12 11 10 37 37 H 1.09007 * 109.47099 * 29.97993 * 12 11 10 38 38 H 1.08992 * 109.47218 * 149.98037 * 12 11 10 39 39 H 0.96998 * 119.99770 * 179.68279 * 14 13 11 40 40 H 0.96995 * 120.00029 * 359.68672 * 14 13 11 41 41 H 1.09004 * 109.47143 * 300.00331 * 17 15 2 42 42 H 1.09009 * 109.46792 * 59.99749 * 17 15 2 43 43 H 0.97004 * 119.99827 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1846 2.9792 -1.4426 6 6 3.5219 3.5626 -2.6098 7 8 3.2180 3.0355 -3.6636 8 6 4.2558 4.8337 -2.6097 9 6 4.6760 5.5634 -1.4727 10 7 5.2942 6.6345 -1.8824 11 7 5.3064 6.6529 -3.2812 12 6 5.9082 7.6938 -4.1183 13 6 4.6709 5.5512 -3.7293 14 7 4.4743 5.1979 -5.0488 15 6 2.1388 -1.1672 0.0005 16 8 3.3516 -1.1673 0.0001 17 6 1.3853 -2.4723 0.0005 18 16 2.5614 -3.8481 0.0005 19 6 1.4413 -5.2083 -0.0003 20 1 0.3761 -5.0305 -0.0010 21 6 1.9280 -6.5081 0.0001 22 7 3.2263 -6.7247 0.0015 23 14 0.7404 -7.9501 -0.0015 24 1 -0.6549 -7.4421 -0.0023 25 1 0.9675 -8.7769 -1.2138 26 1 0.9649 -8.7774 1.2111 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 3.1499 1.1383 0.5138 31 1 1.6084 2.0283 0.5138 32 1 1.5001 1.8406 -1.9564 33 1 3.0416 0.9507 -1.9564 34 1 3.4271 3.3993 -0.6026 35 1 4.5118 5.2816 -0.4432 36 1 5.1674 8.4656 -4.3271 37 1 6.7560 8.1360 -3.5948 38 1 6.2492 7.2542 -5.0556 39 1 4.0054 4.3770 -5.2664 40 1 4.8049 5.7703 -5.7587 41 1 0.7582 -2.5299 0.8903 42 1 0.7589 -2.5302 -0.8898 43 1 3.5665 -7.6331 0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704197947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:46 Heat of formation + Delta-G solvation = 9.992856 kcal Electronic energy + Delta-G solvation = -25995.758220 eV Core-core repulsion = 22011.182806 eV Total energy + Delta-G solvation = -3984.575414 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.65604 -39.66783 -38.98062 -35.93328 -35.32961 -34.33578 -33.44531 -32.41374 -30.75934 -29.16450 -28.21230 -27.33286 -26.25670 -25.45889 -23.47082 -22.43326 -21.10434 -20.44963 -19.22169 -18.33953 -17.67279 -17.22063 -16.69423 -16.45804 -16.19828 -16.14855 -15.48180 -15.19553 -15.06501 -14.88597 -14.79019 -13.94619 -13.76222 -13.72573 -13.64969 -13.19951 -13.15025 -13.10896 -12.89252 -12.54754 -12.35951 -12.22990 -11.78717 -11.64007 -11.35044 -11.21308 -11.05823 -11.00194 -10.74042 -9.98365 -9.78296 -9.42266 -9.39090 -9.11629 -9.05886 -8.61777 -8.20422 -8.17351 -6.48344 -6.20179 -3.90596 1.53277 1.83521 1.96495 2.75670 3.03843 3.22548 3.22981 3.28279 3.31301 3.40167 3.43483 3.69333 4.05758 4.21617 4.52914 4.62530 4.73549 4.81555 4.86097 4.91170 5.07607 5.10795 5.13002 5.15149 5.28302 5.36910 5.45731 5.59036 5.70996 5.87419 5.90679 5.91678 5.97906 6.14870 6.18745 6.32887 6.62632 6.91145 7.02603 7.39531 7.48051 7.56083 7.61523 8.27064 8.36954 8.53340 9.25269 10.87313 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.025474 B = 0.001752 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.899693 B =15978.903934 C =16299.876896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.622 5.622 3 C 0.108 3.892 4 C 0.107 3.893 5 N -0.724 5.724 6 C 0.605 3.395 7 O -0.566 6.566 8 C -0.372 4.372 9 C 0.114 3.886 10 N -0.306 5.306 11 N -0.402 5.402 12 C 0.101 3.899 13 C 0.435 3.565 14 N -0.829 5.829 15 C 0.533 3.467 16 O -0.511 6.511 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.398 0.602 35 H 0.189 0.811 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.433 0.567 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.152 30.319 -5.819 30.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.359 5.359 3 C -0.016 4.016 4 C -0.018 4.018 5 N -0.375 5.375 6 C 0.395 3.605 7 O -0.447 6.447 8 C -0.392 4.392 9 C -0.076 4.076 10 N -0.124 5.124 11 N -0.191 5.191 12 C -0.040 4.040 13 C 0.200 3.800 14 N -0.379 5.379 15 C 0.321 3.679 16 O -0.385 6.385 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.232 0.768 35 H 0.206 0.794 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.269 0.731 40 H 0.228 0.772 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.229 30.939 -6.235 31.585 hybrid contribution -2.543 -1.435 -0.312 2.937 sum -1.315 29.504 -6.546 30.250 Atomic orbital electron populations 1.21818 0.79290 1.03256 1.01977 1.47734 1.06947 1.05216 1.75990 1.21472 0.98846 0.85622 0.95638 1.21703 0.96882 0.85288 0.97895 1.45467 1.59374 1.24289 1.08399 1.16896 0.77485 0.82681 0.83400 1.90696 1.57089 1.65650 1.31242 1.19249 1.24939 1.03718 0.91266 1.23773 0.93817 0.90937 0.99092 1.77129 1.26208 1.22611 0.86448 1.48168 1.47401 1.18216 1.05296 1.21818 0.99440 0.89336 0.93406 1.18055 0.89128 0.86399 0.86397 1.41828 1.64914 1.29827 1.01342 1.20401 0.87973 0.84568 0.74953 1.90708 1.13696 1.86715 1.47359 1.23561 1.04575 0.97107 1.04821 1.85415 1.08048 0.93365 1.96697 1.22901 0.94348 0.92195 1.58810 0.90866 1.24993 0.95667 0.98389 0.94560 1.70031 1.11732 1.21544 1.46953 0.86114 0.80354 0.81131 0.77882 1.19611 1.20582 1.20588 0.92610 0.90444 0.91280 0.89165 0.90242 0.91484 0.90732 0.76804 0.79423 0.90696 0.88636 0.90055 0.73063 0.77206 0.89156 0.89142 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 10.29 59.85 0.62 1.41 16 2 N -0.62 -8.42 2.87 -181.57 -0.52 -8.95 16 3 C 0.11 1.20 5.56 -4.04 -0.02 1.17 16 4 C 0.11 1.30 6.00 -4.05 -0.02 1.27 16 5 N -0.72 -7.49 5.55 -61.59 -0.34 -7.83 16 6 C 0.61 7.57 7.79 -12.81 -0.10 7.47 16 7 O -0.57 -8.77 15.14 5.20 0.08 -8.69 16 8 C -0.37 -3.97 6.15 -104.82 -0.64 -4.62 16 9 C 0.11 1.02 11.49 -16.97 -0.20 0.82 16 10 N -0.31 -3.04 12.47 30.88 0.38 -2.66 16 11 N -0.40 -3.36 4.00 -66.82 -0.27 -3.63 16 12 C 0.10 0.39 11.25 59.85 0.67 1.06 16 13 C 0.44 4.11 7.98 -153.78 -1.23 2.89 16 14 N -0.83 -5.86 9.02 31.40 0.28 -5.58 16 15 C 0.53 10.02 7.69 -10.98 -0.08 9.93 16 16 O -0.51 -11.56 15.44 5.56 0.09 -11.47 16 17 C -0.15 -3.04 4.71 36.01 0.17 -2.87 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.25 9.50 30.94 0.29 -14.95 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 23 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.78 6.44 -51.93 -0.33 0.44 16 29 H 0.07 0.49 7.89 -51.93 -0.41 0.08 16 30 H 0.09 1.11 7.42 -51.93 -0.39 0.73 16 31 H 0.08 0.61 7.89 -51.93 -0.41 0.20 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.40 2.84 7.42 -40.82 -0.30 2.54 16 35 H 0.19 0.98 7.50 -52.49 -0.39 0.59 16 36 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.13 7.46 -51.93 -0.39 -0.26 16 39 H 0.43 3.73 7.01 -40.82 -0.29 3.45 16 40 H 0.40 1.42 8.04 -40.82 -0.33 1.09 16 41 H 0.09 1.67 7.40 -51.91 -0.38 1.29 16 42 H 0.09 1.71 8.11 -51.91 -0.42 1.29 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 382.47 15.07 5.76 5.76 Total: -1.00 -39.80 382.47 -7.38 -47.18 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.70 Total: 3.28 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -0.64 Total: 5.58 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.27 Total: -54.17 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: 0.16 Total: -20.17 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -39.80 -7.38 -47.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704197947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.170 kcal (2) G-P(sol) polarization free energy of solvation -39.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds