Wall clock time and date at job start Sat Apr 11 2020 06:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.47159 * 2 1 4 4 C 1.46502 * 120.00163 * 269.99890 * 3 2 1 5 5 C 1.53002 * 109.46829 * 270.00542 * 4 3 2 6 6 N 1.46505 * 109.46449 * 179.97438 * 5 4 3 7 7 C 1.34778 * 119.99503 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00145 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99797 * 180.02562 * 7 6 5 10 10 S 1.81008 * 109.47181 * 179.97438 * 9 7 6 11 11 C 1.76201 * 100.00083 * 179.97438 * 10 9 7 12 12 H 1.08007 * 119.99699 * 359.97438 * 11 10 9 13 13 C 1.38795 * 120.00263 * 180.02562 * 11 10 9 14 14 N 1.31625 * 120.00320 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 119.99746 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46733 * 90.00291 * 15 13 11 17 17 H 1.48495 * 109.47358 * 210.00358 * 15 13 11 18 18 H 1.48500 * 109.47320 * 330.00941 * 15 13 11 19 19 C 1.34772 * 119.99996 * 90.00364 * 3 2 1 20 20 O 1.21280 * 120.00185 * 180.02562 * 19 3 2 21 21 C 1.50702 * 120.00188 * 359.97438 * 19 3 2 22 22 C 1.50696 * 109.47272 * 180.02562 * 21 19 3 23 23 N 1.33251 * 125.52599 * 90.00181 * 22 21 19 24 24 C 1.30825 * 109.82850 * 179.97438 * 23 22 21 25 25 N 1.34434 * 108.08133 * 359.97438 * 24 23 22 26 26 H 0.96991 * 126.82624 * 179.73840 * 25 24 23 27 27 N 1.30709 * 125.53091 * 269.99942 * 22 21 19 28 28 H 1.09001 * 109.47258 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46494 * 299.99879 * 1 2 3 30 30 H 1.09002 * 109.46750 * 59.99666 * 1 2 3 31 31 H 1.08999 * 109.46409 * 239.99593 * 2 1 3 32 32 H 1.09002 * 109.46750 * 120.00334 * 2 1 3 33 33 H 1.09004 * 109.46838 * 30.00243 * 4 3 2 34 34 H 1.08994 * 109.47215 * 150.00359 * 4 3 2 35 35 H 1.08990 * 109.46969 * 299.99465 * 5 4 3 36 36 H 1.09000 * 109.47321 * 60.00319 * 5 4 3 37 37 H 0.96995 * 120.00505 * 0.02562 * 6 5 4 38 38 H 1.09004 * 109.47388 * 299.99911 * 9 7 6 39 39 H 1.08999 * 109.47687 * 60.00075 * 9 7 6 40 40 H 0.97002 * 119.99903 * 179.97438 * 14 13 11 41 41 H 1.08999 * 109.46924 * 59.99927 * 21 19 3 42 42 H 1.09001 * 109.47302 * 300.00405 * 21 19 3 43 43 H 1.08001 * 125.96388 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7076 1.8313 -1.7104 6 7 3.9516 2.5214 -2.9794 7 6 5.1644 2.4503 -3.5628 8 8 6.0540 1.8153 -3.0370 9 6 5.4156 3.1607 -4.8679 10 16 7.1255 2.8773 -5.3898 11 6 7.1415 3.7924 -6.8955 12 1 6.2506 4.3069 -7.2242 13 6 8.2987 3.8512 -7.6596 14 7 8.3108 4.5353 -8.7841 15 14 9.8394 2.9607 -7.0914 16 1 9.8442 1.5808 -7.6399 17 1 11.0393 3.6898 -7.5749 18 1 9.8594 2.9036 -5.6076 19 6 2.2431 2.0165 1.1672 20 8 2.6469 3.1601 1.1672 21 6 1.9915 1.3063 2.4723 22 6 2.3175 2.2297 3.6177 23 7 1.4625 3.0656 4.2058 24 6 2.0686 3.7190 5.1636 25 7 3.3468 3.3049 5.2072 26 1 4.0378 3.6143 5.8134 27 7 3.4847 2.3406 4.1955 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5818 1.6877 -2.0284 34 1 2.0957 3.1410 -1.1384 35 1 4.3884 2.2153 -0.9508 36 1 3.8745 0.7620 -1.8408 37 1 3.2405 3.0302 -3.3994 38 1 4.7350 2.7764 -5.6277 39 1 5.2484 4.2299 -4.7378 40 1 9.1197 4.5766 -9.3179 41 1 2.6213 0.4186 2.5302 42 1 0.9434 1.0125 2.5299 43 1 1.6203 4.4616 5.8071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704262919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:48 Heat of formation + Delta-G solvation = 15.893731 kcal Electronic energy + Delta-G solvation = -26072.294196 eV Core-core repulsion = 22087.974664 eV Total energy + Delta-G solvation = -3984.319533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.50164 -40.37669 -39.15541 -36.64369 -34.82103 -33.70678 -32.42092 -32.14060 -31.56109 -30.22536 -29.51411 -27.61023 -25.59274 -23.93489 -23.60573 -23.05770 -21.14299 -20.51589 -19.30573 -18.68886 -17.89135 -17.65366 -16.89086 -16.39652 -16.06479 -15.74753 -15.62390 -15.36449 -15.03196 -14.90608 -14.33956 -14.18392 -14.10635 -13.72951 -13.66304 -13.39463 -13.18746 -12.77961 -12.65644 -12.50246 -12.37586 -12.23585 -12.10808 -11.58881 -11.42164 -11.24760 -10.98961 -10.61260 -10.59399 -10.45225 -10.29198 -9.97282 -9.84049 -9.54301 -9.13489 -9.00714 -8.95044 -8.47730 -6.89609 -6.27044 -3.98567 1.21540 2.16223 2.25517 2.32872 2.63686 2.87647 3.00411 3.34181 3.40656 3.52879 3.62474 3.73824 4.10385 4.19137 4.35161 4.41886 4.49628 4.59313 4.74707 4.77038 4.83311 4.87679 4.90159 5.06632 5.11995 5.18196 5.27630 5.30720 5.35466 5.64477 5.70484 5.78243 5.80262 5.80876 5.95773 6.03576 6.10259 6.52743 6.62202 6.92151 7.60908 7.66310 7.79260 7.96048 8.43557 8.51128 9.19211 10.82131 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.017323 B = 0.001913 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.984513 B =14631.404494 C =15582.565595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 N -0.609 5.609 4 C 0.107 3.893 5 C 0.108 3.892 6 N -0.735 5.735 7 C 0.532 3.468 8 O -0.519 6.519 9 C -0.123 4.123 10 S -0.142 6.142 11 C -0.521 4.521 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 C 0.524 3.476 20 O -0.521 6.521 21 C -0.047 4.047 22 C 0.244 3.756 23 N -0.535 5.535 24 C 0.264 3.736 25 N -0.482 5.482 26 H 0.443 0.557 27 N -0.300 5.300 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.400 0.600 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.270 0.730 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.601 -7.796 27.737 35.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.024 4.024 3 N -0.344 5.344 4 C -0.016 4.016 5 C -0.018 4.018 6 N -0.390 5.390 7 C 0.317 3.683 8 O -0.393 6.393 9 C -0.274 4.274 10 S 0.084 5.916 11 C -0.668 4.668 12 H 0.106 0.894 13 C -0.114 4.114 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.159 1.159 19 C 0.310 3.690 20 O -0.395 6.395 21 C -0.089 4.089 22 C -0.039 4.039 23 N -0.264 5.264 24 C -0.036 4.036 25 N -0.200 5.200 26 H 0.289 0.711 27 N -0.130 5.130 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.234 0.766 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.080 0.920 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -18.543 -8.576 28.141 34.775 hybrid contribution -0.313 1.138 -0.300 1.217 sum -18.856 -7.439 27.841 34.438 Atomic orbital electron populations 1.22242 0.95366 1.02703 1.02907 1.21722 0.94787 0.81780 1.04110 1.47786 1.66509 1.14715 1.05367 1.21571 0.95652 0.99454 0.84948 1.21580 0.96253 0.97712 0.86229 1.45791 1.14010 1.55058 1.24118 1.20276 0.81518 0.80484 0.85980 1.90704 1.43166 1.41055 1.64362 1.23275 1.04406 1.03401 0.96315 1.84801 1.07844 1.69748 1.29215 1.22320 1.02603 1.36334 1.05576 0.89362 1.24715 0.98460 0.94286 0.93895 1.69938 1.29156 1.39675 1.12934 0.86732 0.82600 0.80371 0.82135 1.19211 1.19957 1.15918 1.20229 0.77325 0.86651 0.84788 1.90772 1.44114 1.17631 1.87009 1.19946 1.05477 0.96458 0.87039 1.23284 0.87097 0.96519 0.97007 1.70343 1.34312 1.11365 1.10338 1.26076 0.82692 0.98250 0.96547 1.48087 1.11668 1.31730 1.28490 0.71148 1.78007 1.21750 1.09889 1.03334 0.91067 0.92151 0.91972 0.89516 0.89876 0.89571 0.89035 0.91249 0.91486 0.76622 0.88420 0.88384 0.91962 0.86300 0.85904 0.76017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.62 10.24 37.16 0.38 -0.24 16 2 C 0.10 0.45 5.93 -4.04 -0.02 0.42 16 3 N -0.61 -4.89 2.47 -173.68 -0.43 -5.32 16 4 C 0.11 0.93 5.52 -4.04 -0.02 0.91 16 5 C 0.11 1.29 6.00 -4.04 -0.02 1.27 16 6 N -0.73 -9.68 5.56 -60.29 -0.33 -10.01 16 7 C 0.53 9.78 7.85 -10.99 -0.09 9.69 16 8 O -0.52 -11.66 15.86 5.55 0.09 -11.57 16 9 C -0.12 -2.43 6.16 36.01 0.22 -2.21 16 10 S -0.14 -3.68 18.55 -107.50 -1.99 -5.68 16 11 C -0.52 -15.19 10.04 30.94 0.31 -14.88 16 12 H 0.09 2.67 8.03 -52.48 -0.42 2.25 16 13 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 14 N -0.88 -26.81 13.97 55.49 0.78 -26.03 16 15 Si 0.86 22.09 27.74 -169.99 -4.71 17.38 16 16 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.24 -6.08 6.74 56.52 0.38 -5.70 16 19 C 0.52 5.55 7.67 -10.99 -0.08 5.46 16 20 O -0.52 -7.98 15.61 5.56 0.09 -7.89 16 21 C -0.05 -0.37 4.88 -29.04 -0.14 -0.51 16 22 C 0.24 2.62 6.63 -156.85 -1.04 1.58 16 23 N -0.54 -5.48 11.19 -11.98 -0.13 -5.61 16 24 C 0.26 1.72 13.13 -90.65 -1.19 0.53 16 25 N -0.48 -3.41 7.45 29.53 0.22 -3.19 16 26 H 0.44 1.47 8.96 -182.34 -1.63 -0.17 16 27 N -0.30 -3.36 12.80 32.42 0.41 -2.94 16 28 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 0.23 7.22 -51.93 -0.37 -0.14 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.36 8.07 -51.93 -0.42 -0.06 16 32 H 0.08 0.24 6.44 -51.93 -0.33 -0.09 16 33 H 0.09 0.53 8.07 -51.93 -0.42 0.11 16 34 H 0.09 0.92 7.42 -51.93 -0.39 0.54 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.40 3.96 8.47 -40.82 -0.35 3.61 16 38 H 0.10 1.76 8.14 -51.91 -0.42 1.33 16 39 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 40 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.12 0.67 7.40 -51.93 -0.38 0.28 16 42 H 0.12 0.65 7.18 -51.93 -0.37 0.27 16 43 H 0.22 0.26 8.06 -52.49 -0.42 -0.16 16 LS Contribution 384.18 15.07 5.79 5.79 Total: -1.00 -42.52 384.18 -9.24 -51.76 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -7.21 Total: -1.42 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -1.80 Total: 4.74 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.51 Total: -53.10 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.17 Total: -19.46 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.38 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -42.52 -9.24 -51.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704262919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.649 kcal (2) G-P(sol) polarization free energy of solvation -42.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds