Wall clock time and date at job start Sat Apr 11 2020 06:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.47400 * 2 1 4 4 C 1.46501 * 119.99717 * 274.84881 * 3 2 1 5 5 C 1.53000 * 109.47104 * 269.99419 * 4 3 2 6 6 N 1.46501 * 109.47104 * 179.97438 * 5 4 3 7 7 C 1.34783 * 119.99582 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00280 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.99743 * 180.02562 * 7 6 5 10 10 S 1.81003 * 109.47258 * 179.97438 * 9 7 6 11 11 C 1.76198 * 100.00041 * 179.97438 * 10 9 7 12 12 H 1.08004 * 119.99669 * 0.02562 * 11 10 9 13 13 C 1.38800 * 120.00051 * 179.97438 * 11 10 9 14 14 N 1.31627 * 120.00074 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99884 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47158 * 89.99695 * 15 13 11 17 17 H 1.48499 * 109.46994 * 210.00115 * 15 13 11 18 18 H 1.48507 * 109.46643 * 329.99566 * 15 13 11 19 19 C 1.34775 * 120.00104 * 94.84440 * 3 2 1 20 20 O 1.21617 * 119.99750 * 185.76919 * 19 3 2 21 21 C 1.47236 * 119.99915 * 5.77005 * 19 3 2 22 22 N 1.37035 * 127.18430 * 251.75544 * 21 19 3 23 23 H 0.97001 * 126.04457 * 0.24319 * 22 21 19 24 24 N 1.28713 * 107.92393 * 180.26181 * 22 21 19 25 25 N 1.28516 * 110.63978 * 359.97438 * 24 22 21 26 26 C 1.33310 * 109.43677 * 0.02562 * 25 24 22 27 27 C 1.50710 * 126.81350 * 179.97438 * 26 25 24 28 28 H 1.09003 * 109.47094 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46690 * 300.00105 * 1 2 3 30 30 H 1.08998 * 109.47222 * 60.00055 * 1 2 3 31 31 H 1.09001 * 109.47094 * 239.99788 * 2 1 3 32 32 H 1.09005 * 109.46967 * 120.00263 * 2 1 3 33 33 H 1.09001 * 109.47266 * 29.99882 * 4 3 2 34 34 H 1.09002 * 109.47223 * 149.99844 * 4 3 2 35 35 H 1.09000 * 109.47346 * 300.00896 * 5 4 3 36 36 H 1.09006 * 109.46719 * 60.00630 * 5 4 3 37 37 H 0.96993 * 120.00021 * 0.02562 * 6 5 4 38 38 H 1.09001 * 109.47026 * 299.99993 * 9 7 6 39 39 H 1.09002 * 109.47302 * 59.99855 * 9 7 6 40 40 H 0.96998 * 119.99832 * 180.02562 * 14 13 11 41 41 H 1.09002 * 109.46933 * 270.02116 * 27 26 25 42 42 H 1.08995 * 109.47028 * 30.02277 * 27 26 25 43 43 H 1.08999 * 109.46821 * 150.02559 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1615 2.1075 -1.2642 5 6 3.5665 1.8812 -1.8262 6 7 3.7094 2.6070 -3.0907 7 6 4.8716 2.5529 -3.7711 8 8 5.7989 1.9031 -3.3368 9 6 5.0188 3.3000 -5.0716 10 16 6.6808 3.0322 -5.7365 11 6 6.5779 3.9895 -7.2122 12 1 5.6647 4.5133 -7.4534 13 6 7.6708 4.0712 -8.0640 14 7 7.5937 4.7859 -9.1666 15 14 9.2504 3.1658 -7.6462 16 1 9.2093 1.8023 -8.2329 17 1 10.4091 3.9095 -8.2025 18 1 9.3883 3.0661 -6.1709 19 6 2.3360 1.9836 1.1630 20 8 2.6407 3.1610 1.1745 21 6 2.3142 1.2165 2.4195 22 7 1.4027 1.3203 3.4375 23 1 0.6401 1.9192 3.4620 24 7 1.7375 0.4829 4.3559 25 7 2.7970 -0.1611 4.0174 26 6 3.2039 0.2538 2.8176 27 6 4.4047 -0.2385 2.0513 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.4219 1.7441 -1.9777 34 1 2.0067 3.1724 -1.0910 35 1 4.3061 2.2445 -1.1126 36 1 3.7213 0.8162 -1.9995 37 1 2.9676 3.1265 -3.4382 38 1 4.2788 2.9369 -5.7849 39 1 4.8644 4.3650 -4.8983 40 1 8.3573 4.8427 -9.7621 41 1 5.2746 0.3639 2.3131 42 1 4.5950 -1.2812 2.3049 43 1 4.2127 -0.1538 0.9817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704263780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:50 Heat of formation + Delta-G solvation = 22.251202 kcal Electronic energy + Delta-G solvation = -26667.232776 eV Core-core repulsion = 22683.188924 eV Total energy + Delta-G solvation = -3984.043852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.89719 -40.54688 -39.26838 -36.96444 -34.94728 -34.49626 -32.99156 -32.45808 -31.72692 -30.22760 -28.79763 -27.87341 -25.64931 -24.96525 -24.17384 -23.31315 -22.25349 -20.76571 -20.23414 -18.66855 -17.98284 -17.79296 -17.34209 -16.59165 -16.42745 -16.04714 -15.59502 -15.29916 -14.96268 -14.82472 -14.54300 -14.22239 -14.11319 -13.78568 -13.62629 -13.43061 -13.32294 -13.11309 -12.81734 -12.72437 -12.51130 -12.40402 -12.29480 -11.83591 -11.64956 -11.61742 -11.28695 -11.08355 -11.02393 -10.78090 -10.64209 -9.88922 -9.76092 -9.65878 -9.43405 -9.11392 -9.01263 -8.52872 -6.94352 -6.30732 -4.02811 0.62252 1.45046 1.78325 1.98665 2.40183 2.77457 2.90522 3.29912 3.33216 3.49301 3.56335 3.65754 3.86558 4.19904 4.25185 4.31479 4.37651 4.49766 4.57372 4.64571 4.71862 4.74808 4.96617 5.05697 5.08342 5.10927 5.12507 5.16964 5.24870 5.32943 5.44879 5.48197 5.57243 5.68829 5.72719 5.81971 5.97324 6.09066 6.38603 6.50801 7.28091 7.48960 7.78063 7.92233 8.39488 8.40613 9.15371 10.78413 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.024100 B = 0.001982 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.559686 B =14122.719820 C =14619.887587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.094 3.906 3 N -0.592 5.592 4 C 0.104 3.896 5 C 0.106 3.894 6 N -0.735 5.735 7 C 0.533 3.467 8 O -0.517 6.517 9 C -0.124 4.124 10 S -0.141 6.141 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 C 0.595 3.405 20 O -0.507 6.507 21 C -0.055 4.055 22 N -0.366 5.366 23 H 0.453 0.547 24 N -0.052 5.052 25 N -0.260 5.260 26 C 0.032 3.968 27 C -0.080 4.080 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.401 0.599 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.271 0.729 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.850 -9.977 21.962 30.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.028 4.028 3 N -0.325 5.325 4 C -0.019 4.019 5 C -0.019 4.019 6 N -0.391 5.391 7 C 0.319 3.681 8 O -0.391 6.391 9 C -0.275 4.275 10 S 0.085 5.915 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.114 4.114 14 N -0.516 5.516 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 C 0.378 3.622 20 O -0.380 6.380 21 C -0.191 4.191 22 N -0.090 5.090 23 H 0.300 0.700 24 N -0.033 5.033 25 N -0.127 5.127 26 C -0.108 4.108 27 C -0.139 4.139 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.235 0.765 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.299 -11.004 23.917 31.502 hybrid contribution -1.104 1.594 -1.695 2.575 sum -18.403 -9.410 22.223 30.349 Atomic orbital electron populations 1.22172 0.95100 1.02959 1.02467 1.21833 0.95003 0.81439 1.04570 1.47703 1.64221 1.15080 1.05490 1.21713 0.97057 0.99022 0.84092 1.21572 0.96543 0.97599 0.86214 1.45774 1.16180 1.53556 1.23562 1.20286 0.81616 0.80848 0.85395 1.90707 1.38764 1.40942 1.68640 1.23275 1.04944 1.03120 0.96125 1.84807 1.11159 1.67798 1.27739 1.22309 1.04237 1.34760 1.05628 0.89365 1.24720 0.98501 0.94290 0.93842 1.69935 1.31680 1.38720 1.11291 0.86732 0.82874 0.80398 0.81833 1.19206 1.19934 1.15898 1.16877 0.77745 0.85691 0.81892 1.90923 1.46144 1.14719 1.86173 1.21726 0.97424 1.05283 0.94652 1.45353 1.22575 1.29228 1.11875 0.69994 1.78230 1.10766 1.01468 1.12820 1.74895 1.05303 1.20614 1.11878 1.22293 0.99219 0.95429 0.93824 1.20305 0.92357 1.02869 0.98331 0.90810 0.92969 0.91641 0.88992 0.89613 0.88921 0.88475 0.91075 0.91194 0.76545 0.88406 0.88348 0.91926 0.89448 0.89292 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.54 10.24 37.16 0.38 -0.16 16 2 C 0.09 0.39 5.92 -4.04 -0.02 0.36 16 3 N -0.59 -3.66 2.47 -175.02 -0.43 -4.09 16 4 C 0.10 0.65 5.59 -4.04 -0.02 0.63 16 5 C 0.11 1.02 6.00 -4.04 -0.02 0.99 16 6 N -0.74 -8.22 5.56 -60.29 -0.33 -8.56 16 7 C 0.53 8.90 7.85 -10.98 -0.09 8.81 16 8 O -0.52 -10.69 15.86 5.56 0.09 -10.60 16 9 C -0.12 -2.29 6.16 36.00 0.22 -2.06 16 10 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 11 C -0.52 -14.81 10.04 30.94 0.31 -14.49 16 12 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 13 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 14 N -0.88 -26.29 13.97 55.49 0.78 -25.51 16 15 Si 0.86 21.56 27.74 -169.99 -4.72 16.84 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 17 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 19 C 0.59 5.12 7.30 -12.61 -0.09 5.03 16 20 O -0.51 -6.24 16.66 5.26 0.09 -6.15 16 21 C -0.05 -0.43 5.59 -82.33 -0.46 -0.89 16 22 N -0.37 -2.44 7.07 33.31 0.24 -2.20 16 23 H 0.45 1.50 8.96 -190.33 -1.71 -0.21 16 24 N -0.05 -0.48 13.35 60.35 0.81 0.33 16 25 N -0.26 -2.66 12.35 33.51 0.41 -2.24 16 26 C 0.03 0.27 6.25 -82.39 -0.51 -0.24 16 27 C -0.08 -0.54 10.08 36.01 0.36 -0.17 16 28 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.05 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.29 8.11 -51.93 -0.42 -0.13 16 32 H 0.09 0.39 5.45 -51.93 -0.28 0.10 16 33 H 0.09 0.36 8.07 -51.93 -0.42 -0.06 16 34 H 0.10 0.70 7.35 -51.93 -0.38 0.32 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.40 3.19 8.47 -40.82 -0.35 2.85 16 38 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 39 H 0.10 1.69 8.14 -51.91 -0.42 1.27 16 40 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.47 7.70 -51.93 -0.40 0.07 16 LS Contribution 384.75 15.07 5.80 5.80 Total: -1.00 -37.75 384.75 -6.65 -44.40 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -7.34 Total: -2.96 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -0.04 Total: 0.46 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 1.46 Total: -42.28 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: 0.18 Total: -16.75 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.72 Total: 16.84 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.75 -6.65 -44.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704263780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.655 kcal (2) G-P(sol) polarization free energy of solvation -37.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds