Wall clock time and date at job start Sat Apr 11 2020 06:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46510 * 109.46633 * 2 1 4 4 C 1.34814 * 126.58985 * 125.27761 * 3 2 1 5 5 C 1.36598 * 106.83311 * 180.10286 * 4 3 2 6 6 C 1.47529 * 125.76787 * 179.89935 * 5 4 3 7 7 O 1.21590 * 120.00030 * 359.71285 * 6 5 4 8 8 N 1.34778 * 119.99919 * 179.71637 * 6 5 4 9 9 C 1.46499 * 119.99771 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47391 * 34.99730 * 9 8 6 11 11 C 1.53002 * 109.46799 * 274.99826 * 9 8 6 12 12 C 1.53000 * 109.46840 * 155.00060 * 9 8 6 13 13 N 1.46504 * 109.47054 * 304.99499 * 12 9 8 14 14 C 1.34777 * 120.00071 * 180.02562 * 13 12 9 15 15 O 1.21281 * 119.99830 * 0.02562 * 14 13 12 16 16 C 1.50692 * 120.00142 * 180.02562 * 14 13 12 17 17 S 1.81002 * 109.47076 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99786 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00495 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00098 * 179.97438 * 18 17 16 21 21 N 1.31633 * 119.99583 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00303 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46781 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46685 * 120.00530 * 22 20 18 25 25 H 1.48496 * 109.47112 * 240.00327 * 22 20 18 26 26 N 1.34399 * 108.46276 * 359.63244 * 5 4 3 27 27 N 1.28766 * 109.52166 * 0.22886 * 26 5 4 28 28 H 1.08999 * 109.47246 * 59.99943 * 1 2 3 29 29 H 1.08998 * 109.47018 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47025 * 299.99854 * 1 2 3 31 31 H 1.08993 * 109.47067 * 240.00018 * 2 1 3 32 32 H 1.09004 * 109.47006 * 119.99667 * 2 1 3 33 33 H 1.08001 * 126.58421 * 359.96381 * 4 3 2 34 34 H 0.96998 * 119.99599 * 359.97438 * 8 6 5 35 35 H 1.09002 * 109.47075 * 299.99543 * 11 9 8 36 36 H 1.08996 * 109.47407 * 60.00500 * 11 9 8 37 37 H 1.09000 * 109.46986 * 180.02562 * 11 9 8 38 38 H 1.08991 * 109.47625 * 64.99762 * 12 9 8 39 39 H 1.09002 * 109.46642 * 184.99913 * 12 9 8 40 40 H 0.97000 * 119.99700 * 0.02562 * 13 12 9 41 41 H 1.09001 * 109.47456 * 300.00106 * 16 14 13 42 42 H 1.09002 * 109.47145 * 60.00200 * 16 14 13 43 43 H 0.97009 * 119.99727 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8755 1.9307 0.8837 5 6 3.0507 3.2323 0.5081 6 6 3.9085 4.2190 1.1915 7 8 4.5324 3.8978 2.1845 8 7 4.0003 5.4765 0.7153 9 6 4.8517 6.4565 1.3944 10 1 5.7342 5.9565 1.7935 11 6 4.0705 7.1039 2.5396 12 6 5.2831 7.5344 0.3979 13 7 5.9262 6.9027 -0.7569 14 6 6.3905 7.6622 -1.7688 15 8 6.2762 8.8688 -1.7232 16 6 7.0515 7.0124 -2.9569 17 16 7.5620 8.2876 -4.1356 18 6 8.2833 7.2773 -5.3860 19 1 8.3037 6.2039 -5.2681 20 6 8.8245 7.8607 -6.5233 21 7 8.7992 9.1689 -6.6673 22 14 9.5898 6.7897 -7.8487 23 1 9.4929 5.3628 -7.4491 24 1 8.8669 6.9949 -9.1294 25 1 11.0174 7.1601 -8.0212 26 7 2.3142 3.4604 -0.5927 27 7 1.6885 2.3844 -0.9224 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.3338 1.4371 1.7279 34 1 3.5028 5.7326 -0.0770 35 1 3.1880 7.6039 2.1404 36 1 3.7631 6.3360 3.2495 37 1 4.7037 7.8333 3.0446 38 1 4.4083 8.0934 0.0659 39 1 5.9869 8.2134 0.8794 40 1 6.0179 5.9377 -0.7931 41 1 7.9261 6.4527 -2.6251 42 1 6.3473 6.3340 -3.4385 43 1 9.1778 9.5767 -7.4620 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001705115205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:55 Heat of formation + Delta-G solvation = 16.335150 kcal Electronic energy + Delta-G solvation = -26124.579954 eV Core-core repulsion = 22140.279563 eV Total energy + Delta-G solvation = -3984.300391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.59509 -40.03133 -38.98884 -36.47472 -35.92039 -33.64637 -32.40213 -31.87791 -31.70785 -30.29005 -29.31300 -26.01397 -25.37747 -25.15268 -24.26720 -22.22634 -21.55331 -20.62320 -20.30319 -18.60891 -17.81150 -16.88418 -16.75421 -16.56474 -16.21896 -15.80573 -15.29758 -15.20075 -14.94764 -14.81058 -14.78135 -14.24045 -14.01499 -13.52623 -13.42594 -13.04890 -12.97859 -12.87225 -12.82178 -12.61257 -12.52636 -12.20758 -12.14605 -11.76400 -11.57426 -11.25312 -11.05012 -10.99233 -10.81433 -10.73429 -10.43687 -9.78571 -9.72984 -9.45332 -9.33598 -9.05491 -8.90234 -8.20418 -6.46886 -6.19370 -3.89370 0.73609 1.36043 1.57209 2.76973 2.97394 3.06749 3.12238 3.23471 3.30084 3.35102 3.72891 3.77637 3.82430 4.17262 4.22733 4.28157 4.42827 4.45093 4.55148 4.78768 4.86589 4.88835 4.99549 5.10179 5.15882 5.18220 5.32546 5.38766 5.44089 5.48326 5.56503 5.70631 5.79563 5.91040 5.92620 5.94718 6.16747 6.18269 6.59142 7.13021 7.57905 7.62539 7.69922 7.86775 8.38119 8.62092 9.26199 10.88112 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010220 B = 0.002352 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.980361 B =11902.809838 C =14128.416415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.116 3.884 3 N -0.361 5.361 4 C 0.094 3.906 5 C -0.106 4.106 6 C 0.609 3.391 7 O -0.539 6.539 8 N -0.711 5.711 9 C 0.132 3.868 10 H 0.098 0.902 11 C -0.161 4.161 12 C 0.113 3.887 13 N -0.739 5.739 14 C 0.533 3.467 15 O -0.517 6.517 16 C -0.154 4.154 17 S -0.060 6.060 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 N -0.202 5.202 27 N -0.059 5.059 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.204 0.796 34 H 0.412 0.588 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.399 0.601 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.074 -19.474 20.120 32.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.146 5.146 4 C -0.063 4.063 5 C -0.245 4.245 6 C 0.394 3.606 7 O -0.415 6.415 8 N -0.363 5.363 9 C 0.028 3.972 10 H 0.116 0.884 11 C -0.220 4.220 12 C -0.012 4.012 13 N -0.395 5.395 14 C 0.319 3.681 15 O -0.391 6.391 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.137 4.137 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 N -0.076 5.076 27 N -0.039 5.039 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.221 0.779 34 H 0.248 0.752 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.233 0.767 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.592 -17.209 19.548 30.880 hybrid contribution 0.920 -2.899 -0.452 3.075 sum -15.672 -20.108 19.097 31.853 Atomic orbital electron populations 1.22093 0.92600 1.03819 1.04106 1.22080 0.96991 0.76045 1.05290 1.50667 1.31407 1.12486 1.20024 1.23393 0.92935 0.93999 0.95985 1.21440 1.08359 0.95087 0.99639 1.16732 0.79889 0.81140 0.82884 1.90816 1.45842 1.79332 1.25500 1.45918 1.48331 1.10086 1.31972 1.21315 0.94251 0.88917 0.92765 0.88360 1.22112 1.00807 1.01230 0.97803 1.21621 0.98532 0.94696 0.86335 1.45988 1.62568 1.10487 1.20418 1.20295 0.77518 0.87302 0.82945 1.90705 1.55391 1.14123 1.78865 1.23530 1.02822 1.05605 0.98469 1.85376 1.75463 1.07035 1.15439 1.22910 1.44368 0.94943 1.05989 0.90910 1.24997 0.95569 0.95354 0.97731 1.70034 1.43099 1.09093 1.28072 0.86114 0.78768 0.79982 0.80619 1.19643 1.20575 1.20579 1.74686 1.04699 1.18352 1.09847 1.82030 1.20186 0.90238 1.11459 0.90584 0.89772 0.91709 0.88130 0.87601 0.77878 0.75186 0.91880 0.91556 0.90897 0.90770 0.89779 0.76705 0.89262 0.89201 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.45 10.12 37.16 0.38 -0.07 16 2 C 0.12 0.31 7.26 -4.03 -0.03 0.28 16 3 N -0.36 -2.51 3.69 -61.05 -0.23 -2.73 16 4 C 0.09 0.67 11.27 -16.83 -0.19 0.48 16 5 C -0.11 -1.06 6.99 -83.55 -0.58 -1.64 16 6 C 0.61 6.50 7.78 -12.47 -0.10 6.40 16 7 O -0.54 -6.78 16.52 5.29 0.09 -6.69 16 8 N -0.71 -6.80 4.51 -54.85 -0.25 -7.05 16 9 C 0.13 1.21 2.73 -67.93 -0.19 1.02 16 10 H 0.10 0.97 7.58 -51.93 -0.39 0.57 16 11 C -0.16 -1.26 9.48 37.16 0.35 -0.91 16 12 C 0.11 1.25 5.23 -4.04 -0.02 1.23 16 13 N -0.74 -9.93 5.39 -60.30 -0.32 -10.25 16 14 C 0.53 10.01 7.85 -10.99 -0.09 9.92 16 15 O -0.52 -11.70 15.86 5.56 0.09 -11.61 16 16 C -0.15 -3.17 6.16 36.00 0.22 -2.94 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.53 -15.41 9.50 30.94 0.29 -15.12 16 19 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 22 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 N -0.20 -2.31 12.04 32.85 0.40 -1.92 16 27 N -0.06 -0.62 13.65 60.35 0.82 0.20 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.06 8.14 -51.93 -0.42 -0.37 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.11 -0.01 8.08 -51.93 -0.42 -0.43 16 33 H 0.20 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.41 3.94 8.29 -40.82 -0.34 3.60 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.40 4.64 8.14 -40.82 -0.33 4.31 16 41 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 42 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 392.02 15.07 5.91 5.91 Total: -1.00 -38.08 392.02 -6.14 -44.23 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.10 Total: 2.13 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -0.05 Total: 0.65 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 1.15 Total: -47.43 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.18 Total: -18.30 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.08 -6.14 -44.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705115205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.562 kcal (2) G-P(sol) polarization free energy of solvation -38.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds