Wall clock time and date at job start Sat Apr 11 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99737 * 2 1 4 4 C 1.52993 * 109.47082 * 90.00025 * 3 2 1 5 5 N 1.46907 * 109.46975 * 179.97438 * 4 3 2 6 6 C 1.46901 * 110.99998 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47169 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99734 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00217 * 179.97438 * 7 6 5 10 10 C 1.37090 * 120.00035 * 179.97438 * 9 7 6 11 11 H 1.08005 * 120.00400 * 0.02562 * 10 9 7 12 12 C 1.38959 * 120.00029 * 180.02562 * 10 9 7 13 13 N 1.31407 * 119.99616 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99987 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47148 * 90.00067 * 14 12 10 16 16 H 1.48498 * 109.46894 * 210.00281 * 14 12 10 17 17 H 1.48505 * 109.47126 * 329.99997 * 14 12 10 18 18 C 1.34776 * 119.99769 * 180.02562 * 2 1 3 19 19 O 1.21565 * 119.99468 * 186.98905 * 18 2 1 20 20 C 1.47729 * 120.00099 * 6.97737 * 18 2 1 21 21 C 1.39647 * 120.10744 * 200.59315 * 20 18 2 22 22 C 1.37850 * 119.92551 * 180.02562 * 21 20 18 23 23 C 1.38610 * 120.14802 * 0.02935 * 22 21 20 24 24 F 1.35090 * 119.89451 * 179.97438 * 23 22 21 25 25 C 1.38835 * 120.21541 * 359.97438 * 23 22 21 26 26 F 1.35101 * 119.96300 * 180.02562 * 25 23 22 27 27 C 1.38056 * 120.07818 * 359.72077 * 25 23 22 28 28 H 1.09008 * 109.47385 * 86.37831 * 1 2 3 29 29 H 1.09000 * 109.47166 * 206.38041 * 1 2 3 30 30 H 1.08997 * 109.47143 * 326.37826 * 1 2 3 31 31 H 1.09002 * 109.46742 * 209.99906 * 3 2 1 32 32 H 1.09004 * 109.47302 * 329.99508 * 3 2 1 33 33 H 1.08993 * 109.47372 * 299.99676 * 4 3 2 34 34 H 1.08996 * 109.47289 * 59.99857 * 4 3 2 35 35 H 1.00904 * 110.99876 * 56.04689 * 5 4 3 36 36 H 1.09002 * 109.47107 * 299.99916 * 6 5 4 37 37 H 1.08995 * 109.47311 * 60.00170 * 6 5 4 38 38 H 0.97000 * 119.99483 * 0.02562 * 9 7 6 39 39 H 0.97001 * 119.99784 * 179.97438 * 13 12 10 40 40 H 1.08001 * 120.04127 * 0.02948 * 21 20 18 41 41 H 1.07998 * 119.92614 * 179.97438 * 22 21 20 42 42 H 1.07998 * 120.08118 * 180.27631 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 1.4424 5 7 3.1874 2.9824 1.4424 6 6 3.4512 3.4380 2.8138 7 6 4.2044 4.7427 2.7736 8 8 4.4934 5.2434 1.7074 9 7 4.5568 5.3531 3.9224 10 6 5.2424 6.5397 3.8857 11 1 5.4998 6.9856 2.9363 12 6 5.6062 7.1688 5.0701 13 7 5.2934 6.6260 6.2253 14 14 6.5397 8.7860 5.0202 15 1 5.5746 9.9145 5.0076 16 1 7.4101 8.8922 6.2187 17 1 7.3767 8.8367 3.7946 18 6 2.1388 -1.1672 -0.0005 19 8 3.3477 -1.1711 0.1276 20 6 1.4084 -2.4418 -0.1565 21 6 1.9930 -3.6397 0.2597 22 6 1.3083 -4.8269 0.1119 23 6 0.0409 -4.8344 -0.4495 24 9 -0.6253 -6.0008 -0.5924 25 6 -0.5460 -3.6469 -0.8654 26 9 -1.7816 -3.6600 -1.4115 27 6 0.1291 -2.4520 -0.7160 28 1 -0.3634 0.0649 -1.0257 29 1 -0.3633 -0.9206 0.4566 30 1 -0.3633 0.8557 0.5690 31 1 3.1499 1.1384 -0.5138 32 1 1.6084 2.0284 -0.5139 33 1 1.5001 1.8408 1.9563 34 1 3.0415 0.9508 1.9563 35 1 2.6918 3.6864 0.9161 36 1 2.5059 3.5806 3.3375 37 1 4.0471 2.6901 3.3369 38 1 4.3259 4.9524 4.7750 39 1 5.5477 7.0649 7.0521 40 1 2.9805 -3.6361 0.6970 41 1 1.7606 -5.7534 0.4334 42 1 -0.3293 -1.5277 -1.0354 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713599809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:57 Heat of formation + Delta-G solvation = -102.329251 kcal Electronic energy + Delta-G solvation = -27936.830334 eV Core-core repulsion = 23361.251131 eV Total energy + Delta-G solvation = -4575.579204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.04399 -49.11418 -40.97486 -38.69372 -38.25293 -36.60775 -35.22168 -33.84290 -32.15181 -31.23453 -31.13650 -29.56933 -27.58871 -26.22977 -24.50088 -23.90138 -23.41050 -22.18590 -20.38691 -19.23735 -18.43008 -18.34647 -17.89563 -17.71811 -16.92994 -16.68246 -16.39470 -16.25359 -15.62685 -15.56660 -15.49537 -15.23332 -14.76303 -14.61574 -14.55131 -14.12967 -13.85751 -13.72065 -13.48284 -13.34424 -13.18179 -13.03456 -12.82349 -12.45485 -12.24853 -12.05949 -11.66165 -11.55128 -11.50613 -11.16676 -10.99688 -10.39013 -10.34798 -10.21513 -9.72610 -9.50762 -9.39484 -9.11527 -8.46597 -8.09043 -7.95963 -6.41481 -3.82255 -0.06702 0.33415 2.12987 2.44040 2.96237 3.12592 3.18154 3.26853 3.33150 3.64544 3.79631 3.90872 3.95475 4.12628 4.28546 4.33755 4.38784 4.59367 4.76732 4.84679 4.95673 5.04335 5.09439 5.14932 5.17030 5.17734 5.26038 5.37297 5.38171 5.47160 5.71611 5.79404 5.88208 5.98761 6.01894 6.12309 6.26921 6.88457 7.15044 7.55551 7.61460 7.70993 8.06457 8.61424 9.18051 9.54425 10.05818 10.76279 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.033078 B = 0.001572 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.285603 B =17811.634793 C =18058.667124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.608 5.608 3 C 0.118 3.882 4 C 0.046 3.954 5 N -0.665 5.665 6 C 0.053 3.947 7 C 0.441 3.559 8 O -0.583 6.583 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.558 3.442 19 O -0.515 6.515 20 C -0.114 4.114 21 C -0.040 4.040 22 C -0.133 4.133 23 C 0.091 3.909 24 F -0.124 7.124 25 C 0.059 3.941 26 F -0.125 7.125 27 C -0.118 4.118 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.026 0.974 34 H 0.076 0.924 35 H 0.348 0.652 36 H 0.043 0.957 37 H 0.087 0.913 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.368 -23.225 -11.005 29.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.341 5.341 3 C -0.004 4.004 4 C -0.084 4.084 5 N -0.298 5.298 6 C -0.079 4.079 7 C 0.226 3.774 8 O -0.467 6.467 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.346 3.654 19 O -0.391 6.391 20 C -0.117 4.117 21 C -0.059 4.059 22 C -0.151 4.151 23 C 0.070 3.930 24 F -0.102 7.102 25 C 0.039 3.961 26 F -0.103 7.103 27 C -0.136 4.136 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.044 0.956 34 H 0.095 0.905 35 H 0.168 0.832 36 H 0.061 0.939 37 H 0.105 0.895 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.173 0.827 41 H 0.173 0.827 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -13.935 -23.133 -11.557 29.375 hybrid contribution -1.131 0.571 0.846 1.524 sum -15.067 -22.563 -10.711 29.168 Atomic orbital electron populations 1.22504 0.79771 1.04282 1.01815 1.47675 1.06932 1.06162 1.73361 1.21502 0.98231 0.83198 0.97481 1.22267 0.96329 0.93418 0.96423 1.59932 1.51136 1.04890 1.13855 1.21655 0.99146 0.97255 0.89888 1.19787 0.85611 0.86926 0.85054 1.90522 1.59391 1.67167 1.29631 1.41857 1.50039 1.21351 1.06766 1.19714 1.30993 0.97646 0.94559 0.87884 1.25271 0.98168 0.99904 0.94638 1.69613 1.47161 1.40058 0.97489 0.85845 0.79242 0.81260 0.77866 1.20444 1.20923 1.19383 1.18079 0.87044 0.83105 0.77216 1.90868 1.13419 1.86664 1.48119 1.19862 0.94238 0.94736 1.02871 1.21258 1.00192 0.89562 0.94856 1.21116 0.92558 1.00549 1.00926 1.18008 0.92372 0.80718 1.01887 1.91561 1.79932 1.45297 1.93429 1.17524 0.82920 0.93296 1.02395 1.91566 1.38370 1.97149 1.83232 1.22291 0.94317 0.98304 0.98703 0.91476 0.89646 0.90289 0.88346 0.90021 0.95558 0.90510 0.83239 0.93890 0.89515 0.77454 0.91877 0.82748 0.82748 0.80900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.28 8.65 59.85 0.52 0.80 16 2 N -0.61 -5.24 2.87 -182.74 -0.53 -5.76 16 3 C 0.12 1.22 5.63 -4.05 -0.02 1.20 16 4 C 0.05 0.57 6.01 -3.82 -0.02 0.55 16 5 N -0.67 -10.69 6.13 -115.06 -0.70 -11.39 16 6 C 0.05 0.95 6.17 -4.97 -0.03 0.92 16 7 C 0.44 10.48 7.82 -10.99 -0.09 10.40 16 8 O -0.58 -15.90 15.78 5.55 0.09 -15.81 16 9 N -0.56 -14.38 5.29 -10.96 -0.06 -14.44 16 10 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 11 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 14 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 C 0.56 5.76 7.51 -12.38 -0.09 5.67 16 19 O -0.51 -7.33 16.18 5.31 0.09 -7.24 16 20 C -0.11 -0.88 5.57 -104.97 -0.58 -1.46 16 21 C -0.04 -0.27 9.58 -39.20 -0.38 -0.65 16 22 C -0.13 -0.76 10.01 -39.59 -0.40 -1.15 16 23 C 0.09 0.65 7.31 -39.22 -0.29 0.36 16 24 F -0.12 -1.02 17.17 2.25 0.04 -0.98 16 25 C 0.06 0.42 7.30 -39.43 -0.29 0.13 16 26 F -0.12 -1.01 17.18 2.25 0.04 -0.97 16 27 C -0.12 -0.73 7.59 -39.13 -0.30 -1.02 16 28 H 0.07 0.21 6.99 -51.92 -0.36 -0.16 16 29 H 0.09 0.35 5.26 -51.93 -0.27 0.07 16 30 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16 31 H 0.10 1.24 7.53 -51.93 -0.39 0.85 16 32 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 33 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.35 5.51 8.43 -39.29 -0.33 5.17 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.15 0.99 7.79 -52.49 -0.41 0.58 16 41 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.17 0.73 4.03 -52.49 -0.21 0.52 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -34.14 369.02 -6.75 -40.88 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -4.76 Total: 10.26 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -2.21 Total: 7.69 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.56 Total: -55.48 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.17 Total: -23.05 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.08 Total: -1.95 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.14 -6.75 -40.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713599809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.446 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds