Wall clock time and date at job start Sat Apr 11 2020 06:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46898 * 109.47078 * 2 1 4 4 C 1.46899 * 110.99934 * 76.02974 * 3 2 1 5 5 C 1.53000 * 109.47217 * 199.54570 * 4 3 2 6 6 N 1.46504 * 109.47516 * 174.88742 * 5 4 3 7 7 C 1.34767 * 120.00249 * 179.97438 * 6 5 4 8 8 O 1.21624 * 119.99991 * 0.02562 * 7 6 5 9 9 C 1.47167 * 120.00107 * 179.97438 * 7 6 5 10 10 S 1.77336 * 128.47525 * 359.97438 * 9 7 6 11 11 N 1.56634 * 95.28411 * 179.97438 * 10 9 7 12 12 N 1.27332 * 109.74236 * 0.02562 * 11 10 9 13 13 C 1.31244 * 120.03694 * 359.97438 * 12 11 10 14 14 C 1.50703 * 124.05269 * 179.97438 * 13 12 11 15 15 C 1.46907 * 110.99839 * 199.97840 * 3 2 1 16 16 C 1.50697 * 109.46948 * 66.05075 * 15 3 2 17 17 O 1.21301 * 119.99996 * 359.97438 * 16 15 3 18 18 N 1.34772 * 120.00031 * 179.97438 * 16 15 3 19 19 C 1.37098 * 119.99968 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00524 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99826 * 179.97438 * 19 18 16 22 22 N 1.31416 * 120.00365 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00115 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47108 * 90.00236 * 23 21 19 25 25 H 1.48498 * 109.47518 * 210.00571 * 23 21 19 26 26 H 1.48500 * 109.46967 * 330.00374 * 23 21 19 27 27 H 1.08994 * 109.47049 * 174.86592 * 1 2 3 28 28 H 1.08999 * 109.46953 * 294.87146 * 1 2 3 29 29 H 1.09005 * 109.46648 * 54.87156 * 1 2 3 30 30 H 1.08996 * 109.47109 * 240.00194 * 2 1 3 31 31 H 1.08997 * 109.46983 * 120.00226 * 2 1 3 32 32 H 1.08999 * 109.47633 * 79.54528 * 4 3 2 33 33 H 1.08996 * 109.47085 * 319.54048 * 4 3 2 34 34 H 1.08999 * 109.47618 * 54.88330 * 5 4 3 35 35 H 1.09001 * 109.46738 * 294.88604 * 5 4 3 36 36 H 0.97004 * 119.99650 * 359.97438 * 6 5 4 37 37 H 1.08990 * 109.47174 * 270.03778 * 14 13 12 38 38 H 1.08996 * 109.47343 * 30.04227 * 14 13 12 39 39 H 1.09009 * 109.46449 * 150.03899 * 14 13 12 40 40 H 1.09003 * 109.47005 * 186.04712 * 15 3 2 41 41 H 1.08995 * 109.46970 * 306.05026 * 15 3 2 42 42 H 0.97000 * 120.00387 * 359.97438 * 18 16 15 43 43 H 0.96994 * 119.99845 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8830 1.9916 1.3309 5 6 1.9279 3.5157 1.2037 6 7 1.6699 4.1228 2.5118 7 6 1.6608 5.4641 2.6422 8 8 1.8662 6.1707 1.6738 9 6 1.4010 6.0739 3.9562 10 16 1.0751 5.2678 5.5017 11 7 0.9255 6.5912 6.3260 12 7 1.0945 7.5955 5.5616 13 6 1.3516 7.4152 4.2873 14 6 1.5664 8.5360 3.3030 15 6 3.4104 1.4516 -0.4686 16 6 3.4713 1.0499 -1.9198 17 8 2.4561 0.7382 -2.5059 18 7 4.6537 1.0370 -2.5664 19 6 4.7092 0.6710 -3.8864 20 1 3.8053 0.3935 -4.4084 21 6 5.9282 0.6582 -4.5532 22 7 7.0280 0.9963 -3.9184 23 14 6.0037 0.1602 -6.3520 24 1 5.8314 1.3627 -7.2062 25 1 7.3198 -0.4654 -6.6377 26 1 4.9199 -0.8126 -6.6423 27 1 -0.3633 -1.0235 -0.0920 28 1 -0.3633 0.4322 0.9323 29 1 -0.3633 0.5914 -0.8405 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.7006 1.6561 1.9689 33 1 0.9320 1.6917 1.7709 34 1 1.1679 3.8438 0.4946 35 1 2.9121 3.8218 0.8488 36 1 1.5057 3.5593 3.2841 37 1 0.6112 8.8196 2.8612 38 1 1.9976 9.3944 3.8181 39 1 2.2459 8.2046 2.5177 40 1 3.7828 2.4701 -0.3576 41 1 4.0258 0.7733 0.1223 42 1 5.4655 1.2866 -2.0978 43 1 7.8790 0.9870 -4.3838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714576366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:15 Heat of formation + Delta-G solvation = 7.940268 kcal Electronic energy + Delta-G solvation = -26496.328418 eV Core-core repulsion = 22511.663998 eV Total energy + Delta-G solvation = -3984.664421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.39455 -39.89718 -38.80342 -36.97893 -35.05989 -33.85049 -33.68779 -31.42017 -31.02845 -29.89362 -28.37998 -27.35032 -26.24720 -24.33881 -23.39806 -22.17577 -21.25328 -20.51709 -19.20136 -18.92751 -17.93273 -17.84901 -16.59480 -16.48342 -16.04910 -15.69633 -15.20837 -15.00342 -14.70986 -14.54841 -14.23473 -13.98446 -13.84802 -13.72755 -13.47528 -13.35038 -13.22941 -12.81801 -12.49223 -12.23120 -11.97556 -11.81834 -11.68473 -11.50809 -11.49463 -11.13992 -10.87007 -10.78935 -10.59036 -10.41497 -10.39986 -10.29724 -10.22833 -10.14910 -9.48113 -9.42631 -8.47703 -8.03309 -7.94770 -6.42760 -3.83535 -0.71725 0.35025 1.00947 1.51213 2.52529 2.59141 3.17284 3.26152 3.31452 3.44711 3.87117 3.94582 4.12287 4.20837 4.30561 4.70044 4.88334 4.90108 5.05496 5.22903 5.24120 5.26742 5.35291 5.35807 5.51377 5.69739 5.74535 5.75625 5.79453 5.82938 5.88393 5.98450 6.07538 6.24364 6.40921 6.51434 6.92420 7.18796 7.21281 7.27998 7.54338 7.66521 8.04951 8.60155 9.17012 9.53051 10.04403 10.74953 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.016401 B = 0.002081 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.812663 B =13452.820912 C =14564.945584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.053 3.947 3 N -0.511 5.511 4 C 0.042 3.958 5 C 0.121 3.879 6 N -0.719 5.719 7 C 0.602 3.398 8 O -0.506 6.506 9 C -0.292 4.292 10 S 0.411 5.589 11 N -0.251 5.251 12 N -0.249 5.249 13 C 0.104 3.896 14 C -0.079 4.079 15 C 0.042 3.958 16 C 0.443 3.557 17 O -0.576 6.576 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.023 0.977 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.397 0.603 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.049 0.951 42 H 0.392 0.608 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.673 6.449 20.098 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.074 4.074 3 N -0.236 5.236 4 C -0.087 4.087 5 C -0.002 4.002 6 N -0.371 5.371 7 C 0.384 3.616 8 O -0.381 6.381 9 C -0.433 4.433 10 S 0.548 5.452 11 N -0.231 5.231 12 N -0.116 5.116 13 C -0.043 4.043 14 C -0.139 4.139 15 C -0.090 4.090 16 C 0.228 3.772 17 O -0.460 6.460 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.231 0.769 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.225 0.775 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.684 6.537 20.458 23.988 hybrid contribution 1.392 -0.242 -0.769 1.609 sum -9.292 6.295 19.689 22.663 Atomic orbital electron populations 1.21696 0.95222 1.01168 1.01578 1.22172 0.96027 0.87763 1.01473 1.61445 1.20103 1.19703 1.22323 1.22261 1.01712 0.93284 0.91413 1.21494 1.03290 0.92496 0.82929 1.45795 1.72690 1.05619 1.12996 1.16362 0.77721 0.82305 0.85175 1.90868 1.48166 1.61228 1.37851 1.27771 1.16701 0.97651 1.01136 1.82508 1.48742 1.19625 0.94371 1.78906 1.19530 0.98661 1.26036 1.70637 1.15474 1.22349 1.03135 1.23012 0.95781 0.94323 0.91147 1.20577 1.04469 0.93303 0.95591 1.21960 0.88860 1.01960 0.96189 1.19681 0.84584 0.85037 0.87887 1.90515 1.34054 1.53220 1.68188 1.41872 1.07454 1.59347 1.11386 1.19687 0.95132 1.41922 0.86022 0.87891 1.25263 0.94815 0.97482 1.00397 1.69610 0.98746 1.48411 1.37542 0.85865 0.77553 0.78844 0.82070 1.20371 1.20971 1.19438 0.92802 0.93924 0.91350 0.88376 0.95855 0.94102 0.90052 0.89457 0.90545 0.76887 0.89114 0.89738 0.87831 0.89268 0.93321 0.77521 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.96 37.16 0.37 -1.39 16 2 C 0.05 0.77 5.18 -3.82 -0.02 0.75 16 3 N -0.51 -7.56 4.10 -236.07 -0.97 -8.53 16 4 C 0.04 0.44 4.92 -3.82 -0.02 0.42 16 5 C 0.12 1.30 5.70 -4.04 -0.02 1.28 16 6 N -0.72 -6.13 5.55 -61.47 -0.34 -6.47 16 7 C 0.60 6.31 7.80 -12.64 -0.10 6.21 16 8 O -0.51 -6.98 14.89 5.26 0.08 -6.90 16 9 C -0.29 -2.63 6.81 -35.96 -0.24 -2.87 16 10 S 0.41 2.76 23.05 -107.50 -2.48 0.28 16 11 N -0.25 -2.47 12.51 60.35 0.75 -1.72 16 12 N -0.25 -2.66 11.54 33.42 0.39 -2.28 16 13 C 0.10 1.01 7.00 -82.84 -0.58 0.43 16 14 C -0.08 -0.64 9.90 36.01 0.36 -0.28 16 15 C 0.04 0.69 5.28 -4.97 -0.03 0.66 16 16 C 0.44 10.01 7.29 -10.99 -0.08 9.93 16 17 O -0.58 -14.86 14.12 5.54 0.08 -14.78 16 18 N -0.56 -13.92 5.29 -10.96 -0.06 -13.98 16 19 C -0.30 -8.15 9.68 -14.93 -0.14 -8.30 16 20 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.28 13.05 55.50 0.72 -23.55 16 23 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.44 6.91 -51.93 -0.36 0.08 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.10 1.81 5.85 -51.93 -0.30 1.50 16 31 H 0.02 0.29 7.99 -51.93 -0.42 -0.12 16 32 H 0.04 0.37 8.00 -51.93 -0.42 -0.04 16 33 H 0.08 0.71 6.58 -51.93 -0.34 0.37 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 0.92 6.95 -51.93 -0.36 0.56 16 36 H 0.40 2.20 7.90 -40.82 -0.32 1.87 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.94 6.47 -51.92 -0.34 0.60 16 40 H 0.09 1.36 6.71 -51.93 -0.35 1.01 16 41 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 42 H 0.39 9.28 7.90 -40.82 -0.32 8.95 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 375.55 15.07 5.66 5.66 Total: -1.00 -32.93 375.55 -7.36 -40.30 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.57 Total: 8.81 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -0.61 Total: 7.33 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.50 Total: -56.53 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: 0.16 Total: -21.68 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -2.48 Total: 0.28 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.93 -7.36 -40.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714576366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.235 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds