Wall clock time and date at job start Sat Apr 11 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47233 * 2 1 4 4 C 1.52998 * 109.46731 * 240.00345 * 2 1 3 5 5 N 1.46508 * 109.47230 * 184.99708 * 4 2 1 6 6 C 1.46500 * 120.00207 * 270.00318 * 5 4 2 7 7 C 1.34774 * 119.99653 * 90.00060 * 5 4 2 8 8 O 1.21558 * 120.00099 * 3.80661 * 7 5 4 9 9 C 1.47803 * 119.99841 * 183.81173 * 7 5 4 10 10 C 1.40928 * 127.23788 * 173.43371 * 9 7 5 11 11 N 1.31134 * 105.77505 * 179.77276 * 10 9 7 12 12 N 1.28517 * 109.05871 * 0.22575 * 11 10 9 13 13 C 1.46498 * 124.44276 * 180.02562 * 12 11 10 14 14 N 1.28593 * 111.11520 * 359.97438 * 12 11 10 15 15 N 1.46494 * 109.47293 * 120.00224 * 2 1 3 16 16 C 1.34773 * 120.00396 * 274.99629 * 15 2 1 17 17 O 1.21284 * 120.00015 * 0.02562 * 16 15 2 18 18 C 1.50697 * 120.00350 * 180.02562 * 16 15 2 19 19 S 1.81001 * 109.47293 * 180.02562 * 18 16 15 20 20 C 1.76192 * 100.00199 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00148 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00193 * 180.02562 * 20 19 18 23 23 N 1.31626 * 120.00154 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00213 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47034 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46962 * 119.99589 * 24 22 20 27 27 H 1.48494 * 109.47162 * 239.99956 * 24 22 20 28 28 H 1.09000 * 109.47056 * 59.99486 * 1 2 3 29 29 H 1.08998 * 109.47233 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46623 * 299.99583 * 1 2 3 31 31 H 1.09001 * 109.47289 * 65.00190 * 4 2 1 32 32 H 1.08997 * 109.47580 * 304.99524 * 4 2 1 33 33 H 1.09006 * 109.46848 * 264.12617 * 6 5 4 34 34 H 1.09005 * 109.46904 * 24.12091 * 6 5 4 35 35 H 1.08993 * 109.47330 * 144.12520 * 6 5 4 36 36 H 1.07996 * 127.10817 * 0.03427 * 10 9 7 37 37 H 1.08994 * 109.47684 * 89.97205 * 13 12 11 38 38 H 1.08999 * 109.47095 * 209.97525 * 13 12 11 39 39 H 1.09008 * 109.47146 * 329.97380 * 13 12 11 40 40 H 0.97006 * 119.99918 * 94.99820 * 15 2 1 41 41 H 1.08999 * 109.46897 * 300.00255 * 18 16 15 42 42 H 1.08997 * 109.47300 * 60.00230 * 18 16 15 43 43 H 0.96998 * 120.00452 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1908 6 6 4.3343 0.2341 -1.7614 7 6 4.0757 -1.8987 -0.6119 8 8 3.3856 -2.8108 -0.2003 9 6 5.5461 -1.9654 -0.4773 10 6 6.2962 -2.9414 0.2089 11 7 7.5525 -2.5984 0.0555 12 7 7.6113 -1.5221 -0.6444 13 6 8.8548 -0.8437 -1.0182 14 7 6.4355 -1.1194 -0.9743 15 7 2.0184 -0.6906 1.1961 16 6 2.1472 -0.0184 2.3571 17 8 1.8584 1.1583 2.4118 18 6 2.6501 -0.7287 3.5873 19 16 2.7103 0.4341 4.9731 20 6 3.3150 -0.6308 6.2400 21 1 3.5250 -1.6670 6.0198 22 6 3.5205 -0.1382 7.5212 23 7 3.2641 1.1247 7.7898 24 14 4.1610 -1.2673 8.8645 25 1 4.3690 -2.6288 8.3092 26 1 5.4504 -0.7413 9.3802 27 1 3.1733 -1.3293 9.9716 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.7516 -0.1582 -2.1370 32 1 1.6054 -1.7197 -1.2953 33 1 4.6288 -0.0407 -2.7743 34 1 3.7697 1.1662 -1.7875 35 1 5.2250 0.3659 -1.1472 36 1 5.9152 -3.7973 0.7461 37 1 9.2114 -1.2372 -1.9700 38 1 8.6704 0.2263 -1.1136 39 1 9.6078 -1.0155 -0.2490 40 1 2.2491 -1.6318 1.1525 41 1 1.9779 -1.5510 3.8323 42 1 3.6494 -1.1205 3.3977 43 1 3.4081 1.4691 8.6851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718568875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:28 Heat of formation + Delta-G solvation = 52.514884 kcal Electronic energy + Delta-G solvation = -27695.998215 eV Core-core repulsion = 23713.266695 eV Total energy + Delta-G solvation = -3982.731520 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.91959 -40.30497 -38.88569 -36.41019 -34.81814 -34.02024 -32.88187 -32.38237 -31.37670 -28.69864 -28.39554 -27.59554 -26.42103 -25.43441 -23.79791 -22.35069 -21.75208 -20.11805 -19.92433 -17.83521 -17.70262 -17.32411 -17.19748 -16.53993 -16.24496 -16.14224 -15.11333 -15.02512 -14.76845 -14.75286 -14.13598 -14.01689 -13.65097 -13.33701 -13.29125 -13.15443 -13.13509 -12.92823 -12.74861 -12.49782 -12.18011 -12.08680 -11.93234 -11.74470 -11.14983 -11.03202 -10.98098 -10.96195 -10.71108 -10.65971 -10.43499 -9.75214 -9.71552 -9.29177 -9.03565 -8.98884 -8.70571 -8.17103 -6.44059 -6.17278 -3.86768 1.01668 1.71257 1.85118 2.62123 2.99066 3.13522 3.21764 3.24856 3.31916 3.38904 3.60135 3.83809 4.25335 4.30022 4.57528 4.65119 4.68035 4.74736 4.86949 4.93935 4.97010 5.15995 5.18075 5.24413 5.31256 5.35239 5.39780 5.50271 5.56581 5.63654 5.76469 5.78157 5.99160 6.03182 6.10195 6.25483 6.26912 6.31362 6.81365 6.97830 7.65196 7.71414 7.87769 7.94480 8.40825 8.75214 9.28431 10.90271 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009229 B = 0.003587 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3033.158344 B = 7803.660692 C = 9889.810043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 H 0.088 0.912 4 C 0.106 3.894 5 N -0.598 5.598 6 C 0.073 3.927 7 C 0.613 3.387 8 O -0.528 6.528 9 C -0.045 4.045 10 C 0.040 3.960 11 N -0.288 5.288 12 N -0.145 5.145 13 C 0.103 3.897 14 N -0.247 5.247 15 N -0.732 5.732 16 C 0.533 3.467 17 O -0.523 6.523 18 C -0.151 4.151 19 S -0.061 6.061 20 C -0.533 4.533 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.869 5.869 24 Si 0.917 3.083 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.209 0.791 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.405 0.595 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.369 -4.782 -25.116 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.020 3.980 3 H 0.106 0.894 4 C -0.016 4.016 5 N -0.329 5.329 6 C -0.070 4.070 7 C 0.399 3.601 8 O -0.404 6.404 9 C -0.207 4.207 10 C -0.144 4.144 11 N -0.127 5.127 12 N -0.048 5.048 13 C -0.037 4.037 14 N -0.096 5.096 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.397 6.397 18 C -0.302 4.302 19 S 0.166 5.834 20 C -0.681 4.681 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.226 0.774 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.242 0.758 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.696 -2.531 -25.044 26.047 hybrid contribution 0.227 -2.785 1.014 2.973 sum 6.923 -5.316 -24.030 25.566 Atomic orbital electron populations 1.22131 0.94623 1.02403 1.02895 1.21298 0.94434 0.97846 0.84409 0.89376 1.21979 0.78700 1.03060 0.97898 1.47575 1.07012 1.21074 1.57281 1.22160 0.96160 0.89619 0.99049 1.16697 0.83973 0.82000 0.77422 1.90769 1.62501 1.37545 1.49540 1.22934 0.95139 0.96845 1.05812 1.24870 0.86980 1.01409 1.01101 1.74052 1.22964 1.02729 1.12984 1.48162 1.06402 1.16144 1.34054 1.22269 0.79996 0.98243 1.03153 1.74511 0.91474 1.23233 1.20409 1.46262 1.68892 1.14698 1.09096 1.20278 0.76780 0.87161 0.83874 1.90672 1.48753 1.15761 1.84559 1.23513 1.03552 1.04772 0.98377 1.85309 1.86243 1.13093 0.98796 1.22928 1.50557 0.98261 0.96367 0.90897 1.24978 0.95152 0.95517 0.97908 1.70030 1.45823 1.13243 1.21341 0.86134 0.78487 0.80249 0.80758 1.19561 1.20622 1.20551 0.91790 0.92233 0.91236 0.88611 0.88758 0.92354 0.90881 0.88814 0.77408 0.88862 0.87519 0.87447 0.75763 0.89272 0.89624 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.48 37.16 0.35 -1.42 16 2 C 0.13 1.55 2.88 -67.93 -0.20 1.35 16 3 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 4 C 0.11 0.98 5.12 -4.04 -0.02 0.96 16 5 N -0.60 -6.30 2.77 -182.70 -0.51 -6.80 16 6 C 0.07 0.62 9.67 59.85 0.58 1.20 16 7 C 0.61 7.77 6.87 -12.35 -0.08 7.69 16 8 O -0.53 -7.57 14.49 5.31 0.08 -7.49 16 9 C -0.05 -0.56 6.87 -82.68 -0.57 -1.13 16 10 C 0.04 0.48 12.05 -16.83 -0.20 0.27 16 11 N -0.29 -3.35 12.01 30.90 0.37 -2.98 16 12 N -0.15 -1.44 4.35 -16.64 -0.07 -1.51 16 13 C 0.10 0.47 11.55 59.85 0.69 1.16 16 14 N -0.25 -2.69 8.71 33.42 0.29 -2.40 16 15 N -0.73 -11.36 4.48 -53.81 -0.24 -11.60 16 16 C 0.53 10.75 7.81 -10.99 -0.09 10.66 16 17 O -0.52 -12.21 15.53 5.55 0.09 -12.12 16 18 C -0.15 -3.34 6.16 36.00 0.22 -3.12 16 19 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 20 C -0.53 -15.69 9.50 30.94 0.29 -15.39 16 21 H 0.07 2.06 7.80 -52.49 -0.41 1.65 16 22 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 23 N -0.87 -26.69 13.22 55.49 0.73 -25.95 16 24 Si 0.92 21.95 29.55 -169.99 -5.02 16.93 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 31 H 0.10 0.59 8.07 -51.93 -0.42 0.17 16 32 H 0.09 0.90 7.37 -51.93 -0.38 0.51 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.53 8.03 -51.93 -0.42 0.11 16 35 H 0.09 0.93 5.35 -51.93 -0.28 0.65 16 36 H 0.21 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.11 0.37 8.14 -51.92 -0.42 -0.05 16 40 H 0.40 6.12 5.99 -40.82 -0.24 5.87 16 41 H 0.09 1.86 8.14 -51.92 -0.42 1.43 16 42 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 380.29 15.07 5.73 5.73 Total: -1.00 -38.33 380.29 -5.79 -44.12 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.91 Total: 3.73 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 0.88 Total: 4.29 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.58 Total: -51.25 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: 0.16 Total: -19.61 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.33 -5.79 -44.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718568875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.637 kcal (2) G-P(sol) polarization free energy of solvation -38.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds