Wall clock time and date at job start Sat Apr 11 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46604 * 2 1 4 4 C 1.52996 * 109.47339 * 120.00546 * 2 1 3 5 5 N 1.46500 * 109.47136 * 175.00150 * 4 2 1 6 6 C 1.46500 * 119.99953 * 269.99970 * 5 4 2 7 7 C 1.34773 * 120.00003 * 89.99637 * 5 4 2 8 8 O 1.21559 * 120.00335 * 3.37948 * 7 5 4 9 9 C 1.47799 * 120.00188 * 183.37870 * 7 5 4 10 10 C 1.40921 * 127.24245 * 173.43606 * 9 7 5 11 11 N 1.31135 * 105.77958 * 179.77356 * 10 9 7 12 12 N 1.28519 * 109.05535 * 0.22606 * 11 10 9 13 13 C 1.46503 * 124.43845 * 180.02562 * 12 11 10 14 14 N 1.28582 * 111.11731 * 359.97438 * 12 11 10 15 15 N 1.46499 * 109.46734 * 240.00781 * 2 1 3 16 16 C 1.34769 * 120.00420 * 84.99959 * 15 2 1 17 17 O 1.21286 * 120.00066 * 359.97438 * 16 15 2 18 18 C 1.50703 * 120.00103 * 179.97438 * 16 15 2 19 19 S 1.81006 * 109.47050 * 179.97438 * 18 16 15 20 20 C 1.76204 * 99.99761 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99816 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99571 * 179.97438 * 20 19 18 23 23 N 1.31626 * 120.00237 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99783 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47092 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46975 * 119.99979 * 24 22 20 27 27 H 1.48496 * 109.47417 * 240.00217 * 24 22 20 28 28 H 1.08997 * 109.47541 * 59.99849 * 1 2 3 29 29 H 1.09002 * 109.46604 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46984 * 299.99524 * 1 2 3 31 31 H 1.08997 * 109.47366 * 54.99945 * 4 2 1 32 32 H 1.09005 * 109.46678 * 294.99835 * 4 2 1 33 33 H 1.09006 * 109.46848 * 264.06924 * 6 5 4 34 34 H 1.09005 * 109.46904 * 24.06399 * 6 5 4 35 35 H 1.08993 * 109.47330 * 144.06827 * 6 5 4 36 36 H 1.08005 * 127.10925 * 0.03034 * 10 9 7 37 37 H 1.09004 * 109.47108 * 89.97710 * 13 12 11 38 38 H 1.08998 * 109.46899 * 209.97582 * 13 12 11 39 39 H 1.08996 * 109.47184 * 329.97342 * 13 12 11 40 40 H 0.97001 * 119.99588 * 264.99691 * 15 2 1 41 41 H 1.09001 * 109.47036 * 299.99423 * 18 16 15 42 42 H 1.09003 * 109.47237 * 60.00135 * 18 16 15 43 43 H 0.97004 * 120.00039 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1904 6 6 4.1259 -1.9919 0.5609 7 6 4.2676 0.1492 1.7154 8 8 3.7500 1.0859 2.2919 9 6 5.7387 0.0801 1.5904 10 6 6.6735 1.0664 1.9635 11 7 7.8517 0.5685 1.6744 12 7 7.6995 -0.6027 1.1677 13 6 8.7993 -1.4630 0.7244 14 7 6.4554 -0.9209 1.1020 15 7 2.0183 -0.6905 -1.1963 16 6 2.1470 -0.0181 -2.3571 17 8 1.8581 1.1586 -2.4116 18 6 2.6498 -0.7283 -3.5876 19 16 2.7098 0.4347 -4.9733 20 6 3.3144 -0.6301 -6.2403 21 1 3.5252 -1.6661 -6.0200 22 6 3.5197 -0.1373 -7.5215 23 7 3.2633 1.1256 -7.7898 24 14 4.1614 -1.2659 -8.8646 25 1 4.3693 -2.6275 -8.3096 26 1 3.1740 -1.3287 -9.9720 27 1 5.4504 -0.7389 -9.3802 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6055 -1.7199 1.2950 32 1 1.7517 -0.1584 2.1369 33 1 4.3784 -2.7262 1.3260 34 1 3.4321 -2.4353 -0.1534 35 1 5.0327 -1.6814 0.0420 36 1 6.4633 2.0312 2.4012 37 1 9.1276 -2.0895 1.5538 38 1 8.4584 -2.0950 -0.0956 39 1 9.6303 -0.8445 0.3851 40 1 2.2490 -1.6316 -1.1528 41 1 3.6492 -1.1200 -3.3981 42 1 1.9775 -1.5506 -3.8327 43 1 3.4072 1.4701 -8.6851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718568876.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:31 Heat of formation + Delta-G solvation = 55.501405 kcal Electronic energy + Delta-G solvation = -27396.315893 eV Core-core repulsion = 23413.713878 eV Total energy + Delta-G solvation = -3982.602015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.93013 -40.22217 -39.04735 -36.51925 -34.69132 -34.03176 -32.88916 -32.44191 -31.57440 -28.76994 -28.47015 -27.52873 -26.44368 -25.49696 -23.79208 -22.35011 -21.80073 -20.32428 -19.90874 -17.86963 -17.72088 -17.36978 -17.21214 -16.47785 -16.32297 -16.14200 -15.10968 -15.06505 -14.84986 -14.81665 -14.35421 -14.01846 -13.63052 -13.33694 -13.27408 -13.16847 -13.12540 -13.04597 -12.73379 -12.56659 -12.17297 -12.11183 -11.95025 -11.80816 -11.20323 -11.08747 -11.02949 -10.96096 -10.77316 -10.66578 -10.40605 -9.81807 -9.72088 -9.36488 -9.10243 -9.05897 -8.73686 -8.23003 -6.50478 -6.22831 -3.93195 1.02981 1.69732 1.84716 2.63202 3.00622 3.05875 3.13741 3.19720 3.26777 3.31209 3.59598 3.71639 4.18942 4.28924 4.58309 4.60171 4.67850 4.72543 4.87271 4.89162 4.94842 5.12251 5.15126 5.23070 5.28417 5.36703 5.40555 5.48269 5.53413 5.61010 5.69095 5.77519 5.87497 6.04902 6.09979 6.11868 6.26288 6.32251 6.67549 6.99298 7.58189 7.72115 7.74398 7.91723 8.33916 8.65598 9.22421 10.84622 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009815 B = 0.003180 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.005946 B = 8801.584476 C =10746.896919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.126 3.874 3 H 0.093 0.907 4 C 0.110 3.890 5 N -0.599 5.599 6 C 0.075 3.925 7 C 0.610 3.390 8 O -0.524 6.524 9 C -0.044 4.044 10 C 0.037 3.963 11 N -0.289 5.289 12 N -0.145 5.145 13 C 0.102 3.898 14 N -0.246 5.246 15 N -0.733 5.733 16 C 0.532 3.468 17 O -0.514 6.514 18 C -0.152 4.152 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.208 0.792 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.392 0.608 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.790 -10.406 21.972 24.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 H 0.111 0.889 4 C -0.013 4.013 5 N -0.331 5.331 6 C -0.068 4.068 7 C 0.396 3.604 8 O -0.398 6.398 9 C -0.206 4.206 10 C -0.146 4.146 11 N -0.129 5.129 12 N -0.047 5.047 13 C -0.037 4.037 14 N -0.095 5.095 15 N -0.388 5.388 16 C 0.318 3.682 17 O -0.388 6.388 18 C -0.303 4.303 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.206 1.206 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.225 0.775 37 H 0.112 0.888 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.227 0.773 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.059 -8.597 21.644 24.064 hybrid contribution 0.291 -2.142 -0.696 2.271 sum 6.350 -10.739 20.948 24.382 Atomic orbital electron populations 1.22118 0.94554 1.02116 1.03152 1.21339 0.94350 0.98486 0.83876 0.88865 1.21925 0.78488 1.02018 0.98899 1.47539 1.06435 1.21441 1.57661 1.22188 0.99590 0.87214 0.97829 1.16692 0.83080 0.82091 0.78571 1.90819 1.73018 1.33073 1.42934 1.22976 0.96082 0.93754 1.07825 1.24838 0.86135 1.01714 1.01916 1.74035 1.26443 0.97509 1.14902 1.48162 1.04897 1.10899 1.40755 1.22284 0.85728 0.93487 1.02205 1.74529 0.91749 1.25463 1.17788 1.46159 1.69538 1.13574 1.09569 1.20287 0.76919 0.87267 0.83740 1.90709 1.48090 1.15699 1.84328 1.23524 1.03420 1.04840 0.98521 1.85446 1.86237 1.12896 0.98712 1.22904 1.50862 0.98198 0.96397 0.90946 1.24988 0.95122 0.95513 0.97941 1.70029 1.45553 1.13221 1.21420 0.86129 0.78548 0.80108 0.80777 1.19642 1.20537 1.20583 0.91255 0.92464 0.91566 0.89547 0.87980 0.92251 0.91321 0.88688 0.77502 0.88846 0.87403 0.87470 0.77266 0.89550 0.89333 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.48 37.16 0.35 -1.38 16 2 C 0.13 1.53 2.88 -67.93 -0.20 1.33 16 3 H 0.09 1.48 7.58 -51.93 -0.39 1.09 16 4 C 0.11 1.02 5.05 -4.04 -0.02 1.00 16 5 N -0.60 -6.33 2.73 -182.71 -0.50 -6.82 16 6 C 0.08 0.63 9.17 59.85 0.55 1.18 16 7 C 0.61 7.98 7.68 -12.35 -0.09 7.89 16 8 O -0.52 -8.07 16.52 5.31 0.09 -7.99 16 9 C -0.04 -0.54 6.86 -82.68 -0.57 -1.11 16 10 C 0.04 0.43 12.05 -16.84 -0.20 0.23 16 11 N -0.29 -3.26 12.01 30.90 0.37 -2.89 16 12 N -0.14 -1.42 4.34 -16.63 -0.07 -1.49 16 13 C 0.10 0.47 11.55 59.85 0.69 1.16 16 14 N -0.25 -2.68 8.72 33.42 0.29 -2.39 16 15 N -0.73 -9.69 4.52 -53.80 -0.24 -9.94 16 16 C 0.53 9.97 7.81 -10.99 -0.09 9.89 16 17 O -0.51 -11.89 15.53 5.55 0.09 -11.81 16 18 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 20 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 24 Si 0.92 21.27 29.55 -169.99 -5.02 16.24 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.55 8.07 -51.93 -0.42 0.13 16 32 H 0.10 0.96 7.38 -51.93 -0.38 0.58 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.46 5.79 -51.93 -0.30 0.16 16 35 H 0.09 0.94 5.38 -51.93 -0.28 0.66 16 36 H 0.21 1.93 8.06 -52.48 -0.42 1.51 16 37 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.39 3.99 6.22 -40.82 -0.25 3.73 16 41 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 42 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -38.67 380.59 -5.70 -44.37 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.80 Total: 1.81 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 0.85 Total: 4.43 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.58 Total: -48.97 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: 0.17 Total: -19.79 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.67 -5.70 -44.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718568876.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.875 kcal (2) G-P(sol) polarization free energy of solvation -38.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds