Wall clock time and date at job start Sat Apr 11 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47311 * 2 1 4 4 N 1.28511 * 124.44584 * 269.97664 * 3 2 1 5 5 C 1.31134 * 109.06311 * 179.73596 * 4 3 2 6 6 C 1.50700 * 127.11708 * 180.29375 * 5 4 3 7 7 C 1.40926 * 105.76889 * 0.42719 * 5 4 3 8 8 C 1.47806 * 127.23185 * 179.83894 * 7 5 4 9 9 O 1.21559 * 120.00235 * 359.71602 * 8 7 5 10 10 N 1.34774 * 119.99683 * 179.71256 * 8 7 5 11 11 C 1.46506 * 120.00072 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47289 * 180.02562 * 11 10 8 13 13 N 1.46496 * 109.46953 * 180.02562 * 12 11 10 14 14 C 1.34779 * 120.00107 * 179.97438 * 13 12 11 15 15 O 1.21284 * 119.99695 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00208 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47017 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99878 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00130 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99971 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99862 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00119 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47243 * 89.99857 * 22 20 18 24 24 H 1.48495 * 109.47255 * 210.00051 * 22 20 18 25 25 H 1.48508 * 109.46889 * 330.00220 * 22 20 18 26 26 N 1.28592 * 124.44242 * 89.99882 * 3 2 1 27 27 H 1.08996 * 109.47179 * 299.99712 * 1 2 3 28 28 H 1.08996 * 109.46647 * 60.00184 * 1 2 3 29 29 H 1.08997 * 109.46901 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47470 * 239.99677 * 2 1 3 31 31 H 1.09006 * 109.47140 * 120.00058 * 2 1 3 32 32 H 1.08993 * 109.46952 * 270.16616 * 6 5 4 33 33 H 1.09000 * 109.47107 * 30.16517 * 6 5 4 34 34 H 1.09001 * 109.46928 * 150.16513 * 6 5 4 35 35 H 0.97001 * 120.00676 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.47060 * 300.00359 * 11 10 8 37 37 H 1.09004 * 109.47073 * 59.99848 * 11 10 8 38 38 H 1.09001 * 109.46832 * 299.99854 * 12 11 10 39 39 H 1.08996 * 109.46952 * 59.99873 * 12 11 10 40 40 H 0.96994 * 120.00508 * 359.97438 * 13 12 11 41 41 H 1.09001 * 109.47328 * 299.99853 * 16 14 13 42 42 H 1.08996 * 109.47197 * 60.00326 * 16 14 13 43 43 H 0.96997 * 119.99523 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2611 2.0664 -1.0598 5 6 2.6771 3.2603 -0.7119 6 6 3.0681 4.3901 -1.6293 7 6 2.6857 3.2674 0.6973 8 6 3.0802 4.3825 1.5836 9 8 3.4527 5.4363 1.1056 10 7 3.0268 4.2310 2.9217 11 6 3.4173 5.3364 3.8003 12 6 3.2659 4.9053 5.2605 13 7 3.6557 6.0110 6.1389 14 6 3.6023 5.8595 7.4771 15 8 3.2309 4.8080 7.9540 16 6 4.0039 6.9966 8.3808 17 16 3.8246 6.4867 10.1082 18 6 4.3448 7.9624 10.9184 19 1 4.6466 8.8205 10.3361 20 6 4.3657 8.0224 12.3050 21 7 3.9974 6.9767 13.0146 22 14 4.9165 9.5871 13.1639 23 1 3.7419 10.4668 13.3913 24 1 5.5374 9.2434 14.4683 25 1 5.9081 10.2951 12.3148 26 7 2.2608 2.0669 1.0605 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 4.1324 4.3232 -1.8548 33 1 2.4957 4.3217 -2.5544 34 1 2.8591 5.3426 -1.1423 35 1 2.7292 3.3903 3.3032 36 1 4.4559 5.6048 3.6069 37 1 2.7775 6.1975 3.6071 38 1 2.2274 4.6367 5.4541 39 1 3.9059 4.0444 5.4533 40 1 3.9524 6.8520 5.7576 41 1 5.0425 7.2650 8.1875 42 1 3.3641 7.8577 8.1875 43 1 4.0117 7.0189 13.9836 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720022096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:38 Heat of formation + Delta-G solvation = 27.529476 kcal Electronic energy + Delta-G solvation = -25377.069646 eV Core-core repulsion = 21393.254677 eV Total energy + Delta-G solvation = -3983.814969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.11475 -39.94579 -39.14744 -36.10077 -35.55948 -34.14916 -33.29980 -32.43431 -31.89793 -30.33510 -28.66564 -27.94076 -25.63712 -25.39645 -23.38240 -22.60946 -21.53262 -21.10801 -20.30054 -18.41457 -17.82981 -17.53268 -17.03980 -16.57482 -16.12081 -15.96831 -15.53717 -15.14586 -15.07475 -14.80649 -14.40559 -14.26245 -14.13447 -13.87984 -13.74680 -13.26515 -13.17863 -13.04476 -12.75275 -12.57411 -12.42069 -12.09236 -12.06896 -11.89644 -11.67963 -11.43538 -11.06589 -11.03001 -10.77340 -10.74110 -10.55606 -9.82790 -9.72492 -9.49576 -9.45504 -9.08276 -8.99468 -8.25321 -6.51251 -6.22389 -3.93145 0.86575 1.49079 1.62921 2.47645 2.85594 3.03637 3.09866 3.22454 3.28466 3.32711 3.43228 3.75951 4.14976 4.16566 4.19820 4.29815 4.37456 4.45118 4.56047 4.80987 4.89415 4.99350 5.04887 5.11954 5.13004 5.17413 5.30193 5.33104 5.37864 5.55147 5.56360 5.62247 5.71987 5.85244 5.87580 5.97072 6.09413 6.12592 6.48712 7.00048 7.58856 7.61138 7.65584 7.77561 8.34699 8.53615 9.23104 10.85048 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.026534 B = 0.001520 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.980208 B =18422.506675 C =19362.510279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.132 3.868 3 N -0.138 5.138 4 N -0.292 5.292 5 C 0.063 3.937 6 C -0.069 4.069 7 C -0.051 4.051 8 C 0.614 3.386 9 O -0.522 6.522 10 N -0.712 5.712 11 C 0.110 3.890 12 C 0.111 3.889 13 N -0.736 5.736 14 C 0.534 3.466 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 N -0.247 5.247 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.410 0.590 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.401 0.599 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.525 -11.284 -31.016 33.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 N -0.041 5.041 4 N -0.133 5.133 5 C -0.101 4.101 6 C -0.128 4.128 7 C -0.214 4.214 8 C 0.397 3.603 9 O -0.396 6.396 10 N -0.364 5.364 11 C -0.014 4.014 12 C -0.014 4.014 13 N -0.392 5.392 14 C 0.320 3.680 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 N -0.095 5.095 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.246 0.754 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.236 0.764 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.345 -13.651 -30.346 33.702 hybrid contribution 0.997 2.805 0.065 2.978 sum -4.348 -10.846 -30.282 32.458 Atomic orbital electron populations 1.22199 0.92683 1.04265 1.03885 1.22158 0.96373 0.73821 1.06311 1.48149 1.43402 1.13450 0.99066 1.73971 1.18872 1.05150 1.15275 1.23307 1.00423 0.93775 0.92558 1.20252 1.02115 0.93570 0.96880 1.22824 1.10442 0.93713 0.94382 1.16522 0.77545 0.85005 0.81223 1.90809 1.46955 1.26653 1.75183 1.45601 1.67666 1.17871 1.05287 1.21526 1.01950 0.89730 0.88231 1.21310 1.01781 0.90981 0.87377 1.45793 1.70674 1.16721 1.06022 1.20326 0.76774 0.89337 0.81523 1.90711 1.44986 1.28459 1.74797 1.23529 1.04408 0.99348 1.03107 1.85396 1.87344 1.21022 0.89614 1.22873 1.51664 0.99912 0.93971 0.90863 1.24995 0.94865 0.97355 0.96354 1.70017 1.44674 1.28961 1.06645 0.86161 0.78828 0.81770 0.78701 1.20265 1.20756 1.19675 1.74324 1.14684 1.04366 1.16134 0.91173 0.91310 0.89219 0.86959 0.86877 0.89954 0.90579 0.88550 0.75430 0.90201 0.90205 0.90838 0.90827 0.76445 0.89036 0.89038 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.53 10.24 37.16 0.38 -0.15 16 2 C 0.13 0.50 7.24 -4.04 -0.03 0.47 16 3 N -0.14 -1.13 3.94 -10.61 -0.04 -1.18 16 4 N -0.29 -2.78 12.01 33.92 0.41 -2.37 16 5 C 0.06 0.62 7.39 -81.87 -0.61 0.02 16 6 C -0.07 -0.52 10.00 36.01 0.36 -0.16 16 7 C -0.05 -0.53 7.21 -82.68 -0.60 -1.12 16 8 C 0.61 6.57 7.83 -12.35 -0.10 6.48 16 9 O -0.52 -6.62 15.20 5.31 0.08 -6.54 16 10 N -0.71 -6.33 5.55 -61.26 -0.34 -6.67 16 11 C 0.11 0.95 5.79 -4.04 -0.02 0.92 16 12 C 0.11 1.16 5.79 -4.05 -0.02 1.13 16 13 N -0.74 -9.15 5.56 -60.30 -0.33 -9.48 16 14 C 0.53 9.61 7.85 -10.99 -0.09 9.53 16 15 O -0.52 -11.39 15.86 5.55 0.09 -11.30 16 16 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 22 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 26 N -0.25 -2.34 11.84 33.42 0.40 -1.95 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.11 0.24 8.14 -51.92 -0.42 -0.19 16 31 H 0.11 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.79 6.77 -51.93 -0.35 0.44 16 35 H 0.41 3.17 8.24 -40.82 -0.34 2.84 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.40 3.79 8.47 -40.82 -0.35 3.45 16 41 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -37.57 390.56 -6.74 -44.31 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.07 Total: 0.71 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -0.30 Total: 1.44 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 0.82 Total: -46.96 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: 0.17 Total: -17.84 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.57 -6.74 -44.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720022096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.838 kcal (2) G-P(sol) polarization free energy of solvation -37.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds