Wall clock time and date at job start Sat Apr 11 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47311 * 2 1 4 4 N 1.28511 * 124.44584 * 269.97664 * 3 2 1 5 5 C 1.31134 * 109.06311 * 179.73596 * 4 3 2 6 6 C 1.50700 * 127.11708 * 180.29375 * 5 4 3 7 7 C 1.40926 * 105.76889 * 0.42719 * 5 4 3 8 8 C 1.47806 * 127.23185 * 179.83894 * 7 5 4 9 9 O 1.21559 * 120.00235 * 359.71602 * 8 7 5 10 10 N 1.34774 * 119.99683 * 179.71256 * 8 7 5 11 11 C 1.46506 * 120.00072 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47289 * 180.02562 * 11 10 8 13 13 N 1.46496 * 109.46953 * 180.02562 * 12 11 10 14 14 C 1.34779 * 120.00107 * 179.97438 * 13 12 11 15 15 O 1.21284 * 119.99695 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00208 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47017 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99878 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00130 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99971 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99862 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00119 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47243 * 89.99857 * 22 20 18 24 24 H 1.48495 * 109.47255 * 210.00051 * 22 20 18 25 25 H 1.48508 * 109.46889 * 330.00220 * 22 20 18 26 26 N 1.28592 * 124.44242 * 89.99882 * 3 2 1 27 27 H 1.08996 * 109.47179 * 299.99712 * 1 2 3 28 28 H 1.08996 * 109.46647 * 60.00184 * 1 2 3 29 29 H 1.08997 * 109.46901 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47470 * 239.99677 * 2 1 3 31 31 H 1.09006 * 109.47140 * 120.00058 * 2 1 3 32 32 H 1.08993 * 109.46952 * 270.16616 * 6 5 4 33 33 H 1.09000 * 109.47107 * 30.16517 * 6 5 4 34 34 H 1.09001 * 109.46928 * 150.16513 * 6 5 4 35 35 H 0.97001 * 120.00676 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.47060 * 300.00359 * 11 10 8 37 37 H 1.09004 * 109.47073 * 59.99848 * 11 10 8 38 38 H 1.09001 * 109.46832 * 299.99854 * 12 11 10 39 39 H 1.08996 * 109.46952 * 59.99873 * 12 11 10 40 40 H 0.96994 * 120.00508 * 359.97438 * 13 12 11 41 41 H 1.09001 * 109.47328 * 299.99853 * 16 14 13 42 42 H 1.08996 * 109.47197 * 60.00326 * 16 14 13 43 43 H 0.96997 * 119.99523 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2611 2.0664 -1.0598 5 6 2.6771 3.2603 -0.7119 6 6 3.0681 4.3901 -1.6293 7 6 2.6857 3.2674 0.6973 8 6 3.0802 4.3825 1.5836 9 8 3.4527 5.4363 1.1056 10 7 3.0268 4.2310 2.9217 11 6 3.4173 5.3364 3.8003 12 6 3.2659 4.9053 5.2605 13 7 3.6557 6.0110 6.1389 14 6 3.6023 5.8595 7.4771 15 8 3.2309 4.8080 7.9540 16 6 4.0039 6.9966 8.3808 17 16 3.8246 6.4867 10.1082 18 6 4.3448 7.9624 10.9184 19 1 4.6466 8.8205 10.3361 20 6 4.3657 8.0224 12.3050 21 7 3.9974 6.9767 13.0146 22 14 4.9165 9.5871 13.1639 23 1 3.7419 10.4668 13.3913 24 1 5.5374 9.2434 14.4683 25 1 5.9081 10.2951 12.3148 26 7 2.2608 2.0669 1.0605 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 4.1324 4.3232 -1.8548 33 1 2.4957 4.3217 -2.5544 34 1 2.8591 5.3426 -1.1423 35 1 2.7292 3.3903 3.3032 36 1 4.4559 5.6048 3.6069 37 1 2.7775 6.1975 3.6071 38 1 2.2274 4.6367 5.4541 39 1 3.9059 4.0444 5.4533 40 1 3.9524 6.8520 5.7576 41 1 5.0425 7.2650 8.1875 42 1 3.3641 7.8577 8.1875 43 1 4.0117 7.0189 13.9836 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720022096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:38 Heat of formation + Delta-G solvation = -2.517988 kcal Electronic energy + Delta-G solvation = -25378.372602 eV Core-core repulsion = 21393.254677 eV Total energy + Delta-G solvation = -3985.117925 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.78031 -40.87384 -40.42309 -37.05331 -36.08028 -35.18519 -34.57067 -34.03213 -32.43975 -31.60774 -29.59331 -28.75149 -27.64092 -26.20708 -24.03624 -23.32454 -22.20358 -22.06287 -21.43193 -19.88189 -19.03851 -18.20389 -17.89423 -17.68573 -17.07905 -17.03129 -16.86316 -16.71743 -16.22411 -15.70730 -15.51022 -15.18197 -15.07581 -14.85127 -14.68726 -14.39544 -14.27632 -13.82919 -13.68543 -13.44941 -13.15201 -13.05808 -12.91569 -12.91173 -12.83280 -12.60839 -12.58907 -12.37949 -12.10103 -11.72496 -11.44827 -11.39276 -11.13090 -11.00397 -10.44151 -10.26376 -10.21694 -10.11646 -8.65132 -8.33649 -6.11353 0.13784 0.79053 1.11752 1.26474 1.43593 1.45699 1.56344 1.59928 1.80478 2.06618 2.28376 2.46222 2.80535 3.00724 3.33474 3.53292 3.63548 3.80942 3.89030 3.94455 4.01120 4.01431 4.21417 4.33297 4.38379 4.40928 4.54501 4.57862 4.68501 4.75132 4.77976 4.81235 4.84326 4.97017 5.13056 5.13452 5.28877 5.37093 5.43578 5.53345 6.21174 6.24869 6.46416 6.91393 7.05146 7.08017 7.21322 8.75502 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.026534 B = 0.001520 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.980208 B =18422.506675 C =19362.510279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.119 3.881 3 N -0.131 5.131 4 N -0.301 5.301 5 C 0.050 3.950 6 C -0.066 4.066 7 C -0.072 4.072 8 C 0.614 3.386 9 O -0.546 6.546 10 N -0.705 5.705 11 C 0.120 3.880 12 C 0.115 3.885 13 N -0.710 5.710 14 C 0.537 3.463 15 O -0.563 6.563 16 C -0.130 4.130 17 S -0.151 6.151 18 C -0.547 4.547 19 H 0.084 0.916 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.258 1.258 26 N -0.250 5.250 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.116 0.884 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.416 0.584 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.420 0.580 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.125 -10.518 -32.576 34.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.002 3.998 3 N -0.036 5.036 4 N -0.143 5.143 5 C -0.113 4.113 6 C -0.125 4.125 7 C -0.233 4.233 8 C 0.398 3.602 9 O -0.422 6.422 10 N -0.357 5.357 11 C -0.003 4.003 12 C -0.010 4.010 13 N -0.365 5.365 14 C 0.323 3.677 15 O -0.441 6.441 16 C -0.282 4.282 17 S 0.076 5.924 18 C -0.695 4.695 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.182 1.182 26 N -0.100 5.100 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.134 0.866 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.253 0.747 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.257 0.743 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.941 -12.869 -31.959 34.806 hybrid contribution 0.825 2.447 0.400 2.613 sum -4.116 -10.422 -31.559 33.490 Atomic orbital electron populations 1.22172 0.92062 1.05589 1.02572 1.22653 0.96868 0.72098 1.08191 1.48693 1.42079 1.14316 0.98472 1.73960 1.19233 1.05268 1.15811 1.23676 1.00422 0.94404 0.92793 1.20279 1.02802 0.92428 0.96977 1.22830 1.11723 0.94070 0.94704 1.16577 0.77222 0.84817 0.81550 1.90791 1.48229 1.27514 1.75636 1.45532 1.67109 1.18185 1.04861 1.21415 1.02554 0.89684 0.86679 1.21350 1.01557 0.90143 0.87918 1.45472 1.68706 1.18078 1.04267 1.20022 0.76615 0.88072 0.82998 1.90703 1.47493 1.29937 1.75968 1.23376 1.06254 1.00472 0.98066 1.85561 1.87856 1.22848 0.96166 1.23222 1.51527 1.00062 0.94653 0.89829 1.26116 0.94678 1.01106 0.97213 1.70181 1.46038 1.31542 1.07002 0.84959 0.78709 0.76988 0.77357 1.19352 1.20369 1.18202 1.74287 1.14726 1.04285 1.16689 0.92580 0.92409 0.86570 0.84993 0.85156 0.89185 0.89156 0.89411 0.74741 0.89508 0.89517 0.91049 0.91022 0.74265 0.86974 0.86955 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 10.24 71.98 0.74 -0.06 16 2 C 0.12 0.71 7.24 86.38 0.63 1.33 16 3 N -0.13 -2.02 3.94 -187.48 -0.74 -2.76 16 4 N -0.30 -5.49 12.01 -46.58 -0.56 -6.05 16 5 C 0.05 0.96 7.39 43.32 0.32 1.28 16 6 C -0.07 -0.96 10.00 71.24 0.71 -0.25 16 7 C -0.07 -1.46 7.21 42.25 0.30 -1.16 16 8 C 0.61 12.74 7.83 86.78 0.68 13.41 16 9 O -0.55 -13.49 15.20 -3.90 -0.06 -13.55 16 10 N -0.70 -11.70 5.55 -466.00 -2.59 -14.29 16 11 C 0.12 1.84 5.79 86.38 0.50 2.34 16 12 C 0.11 2.21 5.79 86.38 0.50 2.71 16 13 N -0.71 -16.11 5.56 -463.07 -2.57 -18.68 16 14 C 0.54 18.78 7.85 87.66 0.69 19.46 16 15 O -0.56 -25.05 15.86 -3.04 -0.05 -25.10 16 16 C -0.13 -4.97 6.16 71.23 0.44 -4.53 16 17 S -0.15 -8.29 20.57 -56.49 -1.16 -9.45 16 18 C -0.55 -30.93 9.50 67.96 0.65 -30.29 16 19 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 20 C 0.01 0.77 5.49 84.86 0.47 1.24 16 21 N -0.91 -55.68 13.22 21.65 0.29 -55.40 16 22 Si 1.00 43.33 29.55 68.60 2.03 45.36 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 26 N -0.25 -4.57 11.84 -48.17 -0.57 -5.14 16 27 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.13 0.27 8.14 -2.38 -0.02 0.26 16 31 H 0.13 0.33 8.14 -2.38 -0.02 0.31 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 1.43 6.77 -2.39 -0.02 1.41 16 35 H 0.42 6.00 8.24 -92.71 -0.76 5.24 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.42 6.62 8.47 -92.71 -0.79 5.84 16 41 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 42 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 43 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -83.23 390.56 0.14 -83.09 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -0.49 Total: 16.47 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 6.62 Total: 5.50 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -6.74 Total: -102.32 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -0.11 Total: -38.65 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.45 kcal Total: -83.23 0.14 -83.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720022096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.572 kcal (2) G-P(sol) polarization free energy of solvation -83.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds