Wall clock time and date at job start Sat Apr 11 2020 06:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.46954 * 2 1 4 4 N 1.28716 * 126.03694 * 273.11034 * 3 2 1 5 5 N 1.28515 * 110.63799 * 180.29885 * 4 3 2 6 6 C 1.33323 * 109.43816 * 359.71613 * 5 4 3 7 7 C 1.37007 * 106.37041 * 359.97438 * 6 5 4 8 8 C 1.47235 * 127.18830 * 180.02562 * 7 6 5 9 9 O 1.21619 * 120.00331 * 185.02826 * 8 7 6 10 10 N 1.34777 * 119.99800 * 5.01959 * 8 7 6 11 11 C 1.46507 * 119.99911 * 174.65153 * 10 8 7 12 12 C 1.53001 * 109.47109 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.46780 * 294.99957 * 12 11 10 14 14 C 1.53001 * 109.46969 * 175.00264 * 12 11 10 15 15 N 1.46503 * 109.46877 * 55.00039 * 12 11 10 16 16 C 1.34773 * 119.99907 * 204.99805 * 15 12 11 17 17 O 1.21285 * 119.99925 * 359.97438 * 16 15 12 18 18 C 1.50696 * 120.00295 * 180.02562 * 16 15 12 19 19 S 1.81003 * 109.47398 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99773 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00012 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99860 * 180.02562 * 20 19 18 23 23 N 1.31637 * 119.99783 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00323 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46866 * 89.99828 * 24 22 20 26 26 H 1.48498 * 109.47346 * 209.99685 * 24 22 20 27 27 H 1.48495 * 109.46956 * 330.00413 * 24 22 20 28 28 H 1.09002 * 109.47379 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46963 * 299.99456 * 1 2 3 30 30 H 1.09001 * 109.47734 * 59.99559 * 1 2 3 31 31 H 1.09006 * 109.46963 * 240.00544 * 2 1 3 32 32 H 1.08994 * 109.47525 * 120.00114 * 2 1 3 33 33 H 1.07995 * 126.81411 * 179.97438 * 6 5 4 34 34 H 0.96998 * 120.00244 * 354.65252 * 10 8 7 35 35 H 1.09000 * 109.46739 * 60.00460 * 11 10 8 36 36 H 1.09002 * 109.46919 * 300.00406 * 11 10 8 37 37 H 1.09000 * 109.47381 * 59.99936 * 14 12 11 38 38 H 1.08998 * 109.47221 * 180.02562 * 14 12 11 39 39 H 1.09008 * 109.46780 * 299.99933 * 14 12 11 40 40 H 0.96998 * 119.99828 * 25.00108 * 15 12 11 41 41 H 1.09004 * 109.46948 * 299.99968 * 18 16 15 42 42 H 1.09002 * 109.47123 * 59.99625 * 18 16 15 43 43 H 0.96998 * 119.99991 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2174 2.1141 -1.0393 5 7 2.6537 3.2740 -0.6989 6 6 2.7514 3.3390 0.6291 7 6 2.3399 2.1226 1.1067 8 6 2.2652 1.6983 2.5146 9 8 1.9658 0.5519 2.7892 10 7 2.5286 2.5802 3.4991 11 6 2.3410 2.1925 4.8994 12 6 2.7074 3.3681 5.8076 13 1 3.7708 3.5859 5.7086 14 6 2.3938 3.0068 7.2609 15 7 1.9291 4.5467 5.4184 16 6 2.3950 5.7818 5.6904 17 8 3.4584 5.9174 6.2578 18 6 1.5943 6.9942 5.2907 19 16 2.4788 8.4927 5.7891 20 6 1.3508 9.7188 5.2155 21 1 0.4357 9.4230 4.7242 22 6 1.6389 11.0647 5.3941 23 7 2.7547 11.4251 5.9925 24 14 0.4435 12.3646 4.7854 25 1 -0.5289 12.6852 5.8610 26 1 1.1932 13.5915 4.4141 27 1 -0.2841 11.8505 3.5975 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.0881 4.1831 1.2127 34 1 2.8424 3.4716 3.2806 35 1 2.9820 1.3415 5.1297 36 1 1.2991 1.9177 5.0638 37 1 2.9728 2.1299 7.5504 38 1 2.6544 3.8444 7.9078 39 1 1.3303 2.7889 7.3597 40 1 1.0785 4.4382 4.9651 41 1 1.4551 6.9974 4.2096 42 1 0.6217 6.9655 5.7821 43 1 2.9562 12.3657 6.1170 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720907918.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:44 Heat of formation + Delta-G solvation = 19.614681 kcal Electronic energy + Delta-G solvation = -26673.331308 eV Core-core repulsion = 22689.173128 eV Total energy + Delta-G solvation = -3984.158180 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -43.66777 -40.23763 -39.32308 -36.66174 -35.80363 -34.12397 -32.46345 -32.10158 -31.28231 -31.20674 -28.68944 -27.07471 -25.52248 -25.04531 -23.94620 -22.48243 -21.85449 -20.80683 -20.47894 -18.64880 -17.86885 -17.31227 -16.86193 -16.66795 -16.64186 -15.98634 -15.37730 -15.21888 -15.00176 -14.83257 -14.77085 -14.37474 -14.18576 -13.44232 -13.43347 -13.29192 -13.06273 -12.94394 -12.75859 -12.62330 -12.41720 -12.17364 -12.10182 -11.93299 -11.33346 -11.29537 -11.09214 -11.05791 -10.78920 -10.65364 -10.55510 -9.94995 -9.85823 -9.64697 -9.49368 -9.15612 -9.08303 -8.29595 -6.55000 -6.25387 -3.96514 0.52145 1.65086 1.95697 2.56692 2.63374 2.90734 2.95718 3.20476 3.25503 3.29194 3.59844 3.88062 4.02005 4.16909 4.24750 4.29272 4.35339 4.55486 4.69304 4.74813 4.92981 4.97428 5.04234 5.04647 5.10242 5.20840 5.27398 5.37179 5.45301 5.51621 5.57064 5.58648 5.77112 5.79867 5.81583 6.01130 6.05473 6.06887 6.44797 6.83354 7.50589 7.52038 7.56532 8.00007 8.31573 8.45910 9.20373 10.81959 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011617 B = 0.002510 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.604034 B =11152.183459 C =12887.759234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.102 3.898 3 N -0.252 5.252 4 N -0.057 5.057 5 N -0.270 5.270 6 C 0.008 3.992 7 C -0.077 4.077 8 C 0.600 3.400 9 O -0.536 6.536 10 N -0.710 5.710 11 C 0.115 3.885 12 C 0.131 3.869 13 H 0.098 0.902 14 C -0.161 4.161 15 N -0.739 5.739 16 C 0.534 3.466 17 O -0.512 6.512 18 C -0.155 4.155 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.200 0.800 34 H 0.410 0.590 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.905 -25.197 -6.958 26.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.018 4.018 3 N -0.049 5.049 4 N -0.037 5.037 5 N -0.132 5.132 6 C -0.153 4.153 7 C -0.211 4.211 8 C 0.384 3.616 9 O -0.413 6.413 10 N -0.362 5.362 11 C -0.008 4.008 12 C 0.026 3.974 13 H 0.116 0.884 14 C -0.220 4.220 15 N -0.395 5.395 16 C 0.320 3.680 17 O -0.385 6.385 18 C -0.306 4.306 19 S 0.168 5.832 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.125 0.875 32 H 0.142 0.858 33 H 0.217 0.783 34 H 0.246 0.754 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.297 -25.610 -7.277 26.723 hybrid contribution -2.273 0.992 -0.199 2.488 sum -4.571 -24.618 -7.476 26.131 Atomic orbital electron populations 1.22100 0.92575 1.04142 1.03471 1.22462 0.96860 0.75658 1.06856 1.47921 1.40127 1.13515 1.03383 1.78298 1.15258 0.98497 1.11677 1.74970 1.15274 1.10460 1.12522 1.24013 1.02027 0.97109 0.92146 1.21867 1.13758 0.94544 0.90884 1.16632 0.77279 0.85043 0.82639 1.90793 1.48736 1.18021 1.83763 1.45654 1.67700 1.16906 1.05988 1.21831 1.02965 0.97564 0.78475 1.21154 0.98145 0.84067 0.94069 0.88409 1.22116 1.02051 1.02645 0.95210 1.46180 1.24918 1.05197 1.63229 1.20356 0.86078 0.83586 0.77987 1.90720 1.22227 1.85851 1.39743 1.23548 1.03456 0.98885 1.04690 1.85400 1.28622 0.91633 1.77550 1.22852 1.08126 0.92678 1.44773 0.90925 1.24990 0.95850 0.97876 0.94830 1.70012 1.22987 1.17466 1.39785 0.86171 0.80193 0.80117 0.79057 1.20286 1.20725 1.19656 0.89419 0.91495 0.91408 0.87464 0.85774 0.78342 0.75401 0.89325 0.90278 0.91424 0.90873 0.92138 0.76708 0.89162 0.89201 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 10.24 37.15 0.38 -0.55 16 2 C 0.10 0.67 6.74 -4.04 -0.03 0.64 16 3 N -0.25 -2.45 3.39 -57.37 -0.19 -2.64 16 4 N -0.06 -0.67 13.14 60.35 0.79 0.12 16 5 N -0.27 -3.39 12.35 30.47 0.38 -3.02 16 6 C 0.01 0.08 11.55 -17.35 -0.20 -0.12 16 7 C -0.08 -0.73 6.98 -82.33 -0.57 -1.31 16 8 C 0.60 5.43 7.80 -12.60 -0.10 5.33 16 9 O -0.54 -5.79 14.79 5.26 0.08 -5.71 16 10 N -0.71 -5.17 5.38 -61.44 -0.33 -5.50 16 11 C 0.12 0.78 5.24 -4.04 -0.02 0.76 16 12 C 0.13 1.13 2.73 -67.93 -0.19 0.94 16 13 H 0.10 1.00 7.58 -51.93 -0.39 0.60 16 14 C -0.16 -1.35 9.48 37.16 0.35 -1.00 16 15 N -0.74 -7.58 4.52 -53.81 -0.24 -7.82 16 16 C 0.53 8.48 7.81 -10.99 -0.09 8.40 16 17 O -0.51 -10.22 15.53 5.55 0.09 -10.13 16 18 C -0.16 -2.83 6.16 36.00 0.22 -2.61 16 19 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 20 C -0.54 -14.79 9.50 30.94 0.29 -14.50 16 21 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 22 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.62 13.22 55.49 0.73 -24.89 16 24 Si 0.92 21.04 29.55 -169.99 -5.02 16.01 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.12 0.84 6.21 -51.93 -0.32 0.52 16 33 H 0.20 1.39 7.56 -52.49 -0.40 0.99 16 34 H 0.41 2.74 7.17 -40.82 -0.29 2.45 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 40 H 0.40 3.19 8.60 -40.82 -0.35 2.84 16 41 H 0.09 1.50 8.14 -51.91 -0.42 1.07 16 42 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 43 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -36.07 386.27 -6.11 -42.18 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.95 Total: 1.36 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -0.04 Total: -2.05 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 1.13 Total: -43.75 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: 0.16 Total: -15.84 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.07 -6.11 -42.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720907918.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.790 kcal (2) G-P(sol) polarization free energy of solvation -36.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds