Wall clock time and date at job start Sat Apr 11 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46903 * 2 1 4 4 N 1.28713 * 126.03434 * 264.99319 * 3 2 1 5 5 N 1.28519 * 110.63715 * 180.02562 * 4 3 2 6 6 C 1.33322 * 109.43673 * 0.02562 * 5 4 3 7 7 C 1.37006 * 106.37231 * 359.97438 * 6 5 4 8 8 C 1.47238 * 127.18490 * 180.26543 * 7 6 5 9 9 O 1.21617 * 119.99541 * 173.15801 * 8 7 6 10 10 N 1.34772 * 120.00229 * 353.15077 * 8 7 6 11 11 C 1.46503 * 120.00115 * 354.44651 * 10 8 7 12 12 C 1.46499 * 120.00103 * 174.44315 * 10 8 7 13 13 C 1.53005 * 109.47150 * 90.00337 * 12 10 8 14 14 N 1.46499 * 109.47150 * 179.97438 * 13 12 10 15 15 C 1.34776 * 119.99721 * 180.02562 * 14 13 12 16 16 O 1.21287 * 120.00198 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99790 * 180.02562 * 15 14 13 18 18 S 1.81002 * 109.47009 * 179.97438 * 17 15 14 19 19 C 1.76200 * 99.99763 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00200 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99956 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00374 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99846 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47271 * 90.00269 * 23 21 19 25 25 H 1.48508 * 109.47218 * 210.00170 * 23 21 19 26 26 H 1.48499 * 109.47026 * 330.00192 * 23 21 19 27 27 H 1.08996 * 109.46807 * 64.82505 * 1 2 3 28 28 H 1.08998 * 109.47004 * 184.82332 * 1 2 3 29 29 H 1.09000 * 109.47164 * 304.82155 * 1 2 3 30 30 H 1.09001 * 109.47134 * 240.00254 * 2 1 3 31 31 H 1.08999 * 109.47140 * 120.00027 * 2 1 3 32 32 H 1.08001 * 126.81278 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.47222 * 84.14417 * 11 10 8 34 34 H 1.09000 * 109.47489 * 204.14286 * 11 10 8 35 35 H 1.09007 * 109.47144 * 324.14696 * 11 10 8 36 36 H 1.09003 * 109.47055 * 210.00088 * 12 10 8 37 37 H 1.08998 * 109.46953 * 330.00475 * 12 10 8 38 38 H 1.08998 * 109.46820 * 300.00284 * 13 12 10 39 39 H 1.09003 * 109.46642 * 59.99648 * 13 12 10 40 40 H 0.96994 * 120.00235 * 359.97438 * 14 13 12 41 41 H 1.08998 * 109.47265 * 299.99714 * 17 15 14 42 42 H 1.08998 * 109.47110 * 59.99938 * 17 15 14 43 43 H 0.97001 * 120.00123 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.3563 2.0649 -1.0369 5 7 2.7417 3.2428 -0.6969 6 6 2.6645 3.3697 0.6280 7 6 2.1967 2.1732 1.1040 8 6 1.9346 1.8152 2.5079 9 8 1.4015 0.7554 2.7758 10 7 2.2855 2.6618 3.4961 11 6 3.0358 3.8808 3.1843 12 6 1.9165 2.3631 4.8820 13 6 3.0270 1.5413 5.5397 14 7 2.6583 1.2432 6.9258 15 6 3.4914 0.5255 7.7052 16 8 4.5460 0.1261 7.2588 17 6 3.1119 0.2183 9.1309 18 16 4.4257 -0.7537 9.9088 19 6 3.7393 -0.9631 11.5181 20 1 2.7752 -0.5372 11.7536 21 6 4.4377 -1.6754 12.4832 22 7 3.9248 -1.8323 13.6852 23 14 6.1050 -2.4128 12.0756 24 1 7.1715 -1.4275 12.3871 25 1 6.3142 -3.6408 12.8841 26 1 6.1547 -2.7562 10.6318 27 1 -0.3633 0.4371 -0.9300 28 1 -0.3633 -1.0240 0.0864 29 1 -0.3633 0.5868 0.8436 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.9193 4.2428 1.2104 33 1 2.3434 4.6662 2.8812 34 1 3.5876 4.2037 4.0671 35 1 3.7348 3.6796 2.3724 36 1 1.7807 3.2951 5.4308 37 1 0.9868 1.7944 4.8960 38 1 3.1629 0.6094 4.9909 39 1 3.9568 2.1101 5.5256 40 1 1.8151 1.5629 7.2829 41 1 2.9756 1.1503 9.6795 42 1 2.1824 -0.3508 9.1449 43 1 4.4131 -2.3298 14.3597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721062185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:52 Heat of formation + Delta-G solvation = 47.328599 kcal Electronic energy + Delta-G solvation = -26409.211697 eV Core-core repulsion = 22426.255282 eV Total energy + Delta-G solvation = -3982.956415 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.83203 -40.40950 -39.25040 -36.92046 -35.72198 -34.75443 -32.46375 -32.35113 -31.28936 -30.44289 -28.61845 -27.57201 -25.65735 -25.25543 -24.22108 -23.36325 -22.11810 -20.68268 -20.08754 -18.06337 -17.93304 -17.69529 -17.08966 -16.87730 -16.43639 -15.98391 -15.58640 -15.44244 -15.31475 -14.96415 -14.63271 -14.50747 -14.06908 -13.76547 -13.72111 -13.54261 -13.35620 -12.93622 -12.82155 -12.72903 -12.50744 -12.36454 -12.10088 -12.02327 -11.59110 -11.47774 -11.29047 -11.02750 -10.74251 -10.66165 -10.62618 -9.97598 -9.89006 -9.65701 -9.38829 -9.10140 -9.01408 -8.52994 -6.94661 -6.31027 -4.03092 0.41908 1.50890 1.82427 2.23292 2.48987 2.77349 2.91169 3.29777 3.33148 3.48919 3.58633 3.68266 3.85828 4.16952 4.31131 4.32691 4.34090 4.41273 4.45607 4.54659 4.66601 4.70354 4.78491 4.85668 4.99521 5.05469 5.06946 5.08016 5.25692 5.27392 5.43127 5.47230 5.52113 5.57841 5.72871 5.83586 5.91766 5.97333 6.40176 6.54680 7.35308 7.50274 7.87517 7.91942 8.39326 8.41495 9.15085 10.78094 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.024317 B = 0.001845 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.159933 B =15170.251789 C =15467.318524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.106 3.894 3 N -0.250 5.250 4 N -0.056 5.056 5 N -0.276 5.276 6 C -0.016 4.016 7 C -0.070 4.070 8 C 0.594 3.406 9 O -0.523 6.523 10 N -0.595 5.595 11 C 0.053 3.947 12 C 0.109 3.891 13 C 0.107 3.893 14 N -0.735 5.735 15 C 0.532 3.468 16 O -0.518 6.518 17 C -0.124 4.124 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.089 0.911 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.214 0.786 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.400 0.600 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.971 12.392 -26.723 30.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.014 4.014 3 N -0.047 5.047 4 N -0.037 5.037 5 N -0.138 5.138 6 C -0.176 4.176 7 C -0.204 4.204 8 C 0.380 3.620 9 O -0.398 6.398 10 N -0.329 5.329 11 C -0.089 4.089 12 C -0.013 4.013 13 C -0.019 4.019 14 N -0.390 5.390 15 C 0.318 3.682 16 O -0.392 6.392 17 C -0.274 4.274 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.107 0.893 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.128 0.872 31 H 0.136 0.864 32 H 0.230 0.770 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.234 0.766 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.343 11.029 -28.691 31.386 hybrid contribution -1.039 0.249 1.982 2.251 sum -7.382 11.278 -26.710 29.918 Atomic orbital electron populations 1.22088 0.92315 1.04448 1.03271 1.22397 0.97035 0.75384 1.06554 1.47964 1.39608 1.13610 1.03538 1.78290 1.13826 0.99943 1.11642 1.74961 1.16980 1.09175 1.12660 1.24823 1.02097 0.98552 0.92139 1.21825 1.13527 0.94118 0.90953 1.16730 0.78869 0.83740 0.82656 1.90860 1.43056 1.22311 1.83610 1.47260 1.55934 1.23220 1.06445 1.22580 0.96457 0.86015 1.03877 1.21703 0.98778 1.01046 0.79808 1.21573 0.97606 1.00286 0.82438 1.45776 1.23532 1.57638 1.12105 1.20293 0.83666 0.76922 0.87307 1.90711 1.23410 1.50543 1.74505 1.23273 1.05126 1.04930 0.94097 1.84814 1.26221 1.68011 1.12532 1.22309 1.09080 1.40921 0.94608 0.89347 1.24717 0.98045 0.94599 0.93977 1.69935 1.38610 1.39880 1.03193 0.86735 0.84012 0.79726 0.81374 1.19203 1.19926 1.15935 0.91688 0.89288 0.91139 0.87191 0.86446 0.77028 0.91057 0.89415 0.89482 0.88896 0.88657 0.91045 0.91337 0.76554 0.88389 0.88341 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 10.18 37.16 0.38 -0.57 16 2 C 0.11 0.70 6.41 -4.04 -0.03 0.67 16 3 N -0.25 -2.25 3.39 -57.37 -0.19 -2.45 16 4 N -0.06 -0.59 13.14 60.35 0.79 0.20 16 5 N -0.28 -2.85 12.35 30.47 0.38 -2.48 16 6 C -0.02 -0.12 9.96 -17.35 -0.17 -0.29 16 7 C -0.07 -0.60 6.81 -82.33 -0.56 -1.16 16 8 C 0.59 5.25 7.64 -12.61 -0.10 5.16 16 9 O -0.52 -5.92 14.27 5.26 0.08 -5.85 16 10 N -0.60 -3.82 2.87 -182.91 -0.53 -4.35 16 11 C 0.05 0.16 8.68 59.85 0.52 0.68 16 12 C 0.11 0.71 5.45 -4.04 -0.02 0.69 16 13 C 0.11 1.08 6.00 -4.04 -0.02 1.05 16 14 N -0.74 -8.45 5.56 -60.29 -0.33 -8.78 16 15 C 0.53 9.07 7.85 -10.99 -0.09 8.99 16 16 O -0.52 -10.99 15.86 5.55 0.09 -10.90 16 17 C -0.12 -2.30 6.16 36.01 0.22 -2.08 16 18 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 19 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 20 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 21 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 22 N -0.88 -26.32 13.97 55.49 0.78 -25.54 16 23 Si 0.86 21.63 27.74 -169.99 -4.71 16.92 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.24 -5.95 6.74 56.52 0.38 -5.56 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.53 7.73 -51.93 -0.40 0.13 16 30 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.12 0.84 6.91 -51.93 -0.36 0.48 16 32 H 0.21 0.75 4.55 -52.49 -0.24 0.51 16 33 H 0.07 0.09 7.45 -51.93 -0.39 -0.30 16 34 H 0.09 0.19 8.03 -51.93 -0.42 -0.23 16 35 H 0.09 0.26 5.29 -51.93 -0.27 -0.02 16 36 H 0.09 0.36 8.07 -51.93 -0.42 -0.06 16 37 H 0.10 0.68 7.50 -51.93 -0.39 0.29 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.40 3.26 8.47 -40.82 -0.35 2.92 16 41 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 376.66 15.07 5.68 5.68 Total: -1.00 -38.12 376.66 -5.40 -43.52 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -5.77 Total: -1.69 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 0.35 Total: 1.27 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.89 Total: -43.40 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: 0.16 Total: -16.75 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.92 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.12 -5.40 -43.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721062185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.847 kcal (2) G-P(sol) polarization free energy of solvation -38.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds