Wall clock time and date at job start Sat Apr 11 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 109.47309 * 2 1 4 4 C 1.46500 * 119.99775 * 266.79273 * 3 2 1 5 5 C 1.53006 * 109.46958 * 269.99631 * 4 3 2 6 6 N 1.46500 * 109.46958 * 179.97438 * 5 4 3 7 7 C 1.34776 * 119.99739 * 180.02562 * 6 5 4 8 8 O 1.21275 * 120.00197 * 359.97438 * 7 6 5 9 9 C 1.50709 * 119.99554 * 180.02562 * 7 6 5 10 10 S 1.81006 * 109.46715 * 179.97438 * 9 7 6 11 11 C 1.76194 * 99.99690 * 179.97438 * 10 9 7 12 12 H 1.07997 * 120.00473 * 0.02562 * 11 10 9 13 13 C 1.38803 * 120.00123 * 179.97438 * 11 10 9 14 14 N 1.31633 * 119.99714 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00302 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47011 * 60.00650 * 15 13 11 17 17 H 1.48501 * 109.46941 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47252 * 300.00330 * 15 13 11 19 19 C 1.34778 * 120.00203 * 86.78684 * 3 2 1 20 20 O 1.21559 * 119.99698 * 174.69125 * 19 3 2 21 21 C 1.47793 * 120.00086 * 354.97744 * 19 3 2 22 22 C 1.40921 * 127.23796 * 173.93841 * 21 19 3 23 23 N 1.31134 * 105.77643 * 179.97438 * 22 21 19 24 24 N 1.28522 * 109.06001 * 0.02562 * 23 22 21 25 25 C 1.46501 * 124.44338 * 180.02562 * 24 23 22 26 26 N 1.28586 * 111.10872 * 359.71914 * 24 23 22 27 27 H 1.09004 * 109.47147 * 60.00269 * 1 2 3 28 28 H 1.08999 * 109.47218 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46996 * 299.99919 * 1 2 3 30 30 H 1.08999 * 109.47541 * 239.99546 * 2 1 3 31 31 H 1.09004 * 109.47147 * 119.99731 * 2 1 3 32 32 H 1.09000 * 109.47352 * 29.99386 * 4 3 2 33 33 H 1.09002 * 109.47385 * 150.00217 * 4 3 2 34 34 H 1.08993 * 109.47085 * 299.99738 * 5 4 3 35 35 H 1.08995 * 109.46946 * 60.00055 * 5 4 3 36 36 H 0.97005 * 120.00054 * 359.97438 * 6 5 4 37 37 H 1.08993 * 109.47050 * 299.99413 * 9 7 6 38 38 H 1.08995 * 109.46909 * 60.00204 * 9 7 6 39 39 H 0.96994 * 120.00150 * 180.02562 * 14 13 11 40 40 H 1.07997 * 127.11453 * 359.97438 * 22 21 19 41 41 H 1.09000 * 109.46976 * 90.02093 * 25 24 23 42 42 H 1.08997 * 109.46742 * 210.02357 * 25 24 23 43 43 H 1.09002 * 109.46802 * 330.02361 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3294 2.0480 -1.2668 5 6 3.7956 1.8001 -1.6270 6 7 4.1066 2.4665 -2.8941 7 6 5.3483 2.3843 -3.4117 8 8 6.2083 1.7591 -2.8284 9 6 5.6682 3.0703 -4.7149 10 16 7.4028 2.7769 -5.1411 11 6 7.4987 3.6638 -6.6605 12 1 6.6271 4.1730 -7.0445 13 6 8.6947 3.7091 -7.3634 14 7 9.7572 3.0890 -6.8951 15 14 8.7962 4.6488 -8.9746 16 1 8.4660 6.0769 -8.7363 17 1 10.1721 4.5434 -9.5232 18 1 7.8312 4.0728 -9.9453 19 6 2.1813 2.0383 1.1654 20 8 2.6768 3.1483 1.1730 21 6 1.7634 1.4069 2.4346 22 6 1.9680 1.8983 3.7394 23 7 1.4318 1.0111 4.5426 24 7 0.9371 0.0546 3.8411 25 6 0.2556 -1.1158 4.3996 26 7 1.1131 0.2630 2.5845 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6895 1.6494 -2.0540 33 1 2.1564 3.1195 -1.1655 34 1 4.4355 2.1987 -0.8399 35 1 3.9687 0.7288 -1.7283 36 1 3.4186 2.9663 -3.3608 37 1 5.0280 2.6720 -5.5019 38 1 5.4957 4.1417 -4.6134 39 1 10.5931 3.1209 -7.3860 40 1 2.4639 2.8157 4.0199 41 1 -0.8104 -0.9070 4.4897 42 1 0.4040 -1.9713 3.7406 43 1 0.6664 -1.3399 5.3841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721134457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:59 Heat of formation + Delta-G solvation = 53.984678 kcal Electronic energy + Delta-G solvation = -26272.107687 eV Core-core repulsion = 22289.439902 eV Total energy + Delta-G solvation = -3982.667785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.11636 -40.22734 -39.01907 -36.64193 -34.80834 -34.20062 -33.09022 -32.40039 -31.41123 -29.94562 -28.80421 -27.71572 -25.47597 -24.75894 -23.79474 -22.70324 -22.46835 -20.50382 -19.67939 -17.93618 -17.82524 -17.56611 -17.30570 -16.67940 -16.24352 -15.78040 -15.34859 -15.24579 -15.04587 -14.77684 -14.44419 -14.26610 -13.93219 -13.79968 -13.67217 -13.50099 -13.14565 -12.97284 -12.54471 -12.43445 -12.27650 -12.16782 -12.04240 -11.68071 -11.39080 -11.21380 -11.01815 -11.01413 -10.75101 -10.72909 -10.48487 -9.89144 -9.80365 -9.43014 -9.09422 -9.03679 -8.86764 -8.20678 -6.46907 -6.18683 -3.89183 0.85704 1.52699 1.66301 2.41093 2.86008 3.12415 3.14236 3.25742 3.30033 3.35265 3.43301 3.81126 4.11562 4.23259 4.39424 4.48758 4.55438 4.66158 4.68050 4.68568 4.81257 4.97333 5.11110 5.16240 5.18935 5.20688 5.22518 5.37057 5.47261 5.58225 5.65299 5.72004 5.83888 5.89226 5.93417 6.11092 6.15770 6.17797 6.62168 6.89725 7.59417 7.62016 7.71853 7.77423 8.37845 8.64699 9.26345 10.88703 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.032135 B = 0.001711 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.124879 B =16361.068828 C =16571.945806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.104 3.896 3 N -0.596 5.596 4 C 0.108 3.892 5 C 0.107 3.893 6 N -0.737 5.737 7 C 0.533 3.467 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.608 3.392 20 O -0.517 6.517 21 C -0.046 4.046 22 C 0.038 3.962 23 N -0.291 5.291 24 N -0.146 5.146 25 C 0.103 3.897 26 N -0.242 5.242 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.269 0.731 40 H 0.209 0.791 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.799 -8.850 20.850 34.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.018 4.018 3 N -0.329 5.329 4 C -0.015 4.015 5 C -0.018 4.018 6 N -0.392 5.392 7 C 0.319 3.681 8 O -0.390 6.390 9 C -0.303 4.303 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.200 1.200 19 C 0.393 3.607 20 O -0.391 6.391 21 C -0.208 4.208 22 C -0.145 4.145 23 N -0.131 5.131 24 N -0.049 5.049 25 C -0.037 4.037 26 N -0.091 5.091 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.232 0.768 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.226 0.774 41 H 0.112 0.888 42 H 0.125 0.875 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -24.529 -10.448 22.341 34.784 hybrid contribution -0.930 2.134 -2.205 3.206 sum -25.459 -8.315 20.136 33.507 Atomic orbital electron populations 1.22088 0.95406 1.02233 1.02017 1.21803 0.95003 0.81190 1.03851 1.47652 1.65013 1.14919 1.05315 1.21645 0.95506 0.99595 0.84730 1.21569 0.95344 0.98125 0.86810 1.45829 1.12895 1.56292 1.24188 1.20302 0.81256 0.80187 0.86362 1.90706 1.46235 1.40882 1.61203 1.23528 1.07571 1.02993 0.96244 1.85410 1.00326 1.69601 1.28028 1.22834 0.99684 1.37943 1.07968 0.90954 1.24993 0.94691 0.95563 0.98335 1.70010 1.01072 1.40573 1.38651 0.86222 0.77384 0.79948 0.81926 1.19934 1.20830 1.19965 1.16729 0.78117 0.84515 0.81353 1.90864 1.43181 1.19085 1.85921 1.22971 1.06410 0.94811 0.96596 1.24874 1.01000 1.00546 0.88088 1.74052 1.13739 0.98971 1.26289 1.48170 1.38557 1.17328 1.00825 1.22270 0.97549 0.82787 1.01055 1.74622 1.16027 1.17111 1.01363 0.92830 0.91572 0.92134 0.90042 0.88972 0.89401 0.88893 0.91001 0.91545 0.76785 0.89175 0.89112 0.92147 0.77447 0.88817 0.87511 0.87509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.69 37.15 0.36 -0.58 16 2 C 0.10 0.74 5.67 -4.05 -0.02 0.72 16 3 N -0.60 -5.59 2.48 -174.82 -0.43 -6.02 16 4 C 0.11 0.98 5.47 -4.04 -0.02 0.96 16 5 C 0.11 1.34 6.00 -4.04 -0.02 1.31 16 6 N -0.74 -10.03 5.56 -60.29 -0.33 -10.36 16 7 C 0.53 10.21 7.85 -10.98 -0.09 10.12 16 8 O -0.52 -12.15 15.86 5.56 0.09 -12.06 16 9 C -0.15 -3.12 6.16 36.01 0.22 -2.89 16 10 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 11 C -0.54 -15.41 9.50 30.94 0.29 -15.12 16 12 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 13 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 14 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 15 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 C 0.61 6.95 7.65 -12.35 -0.09 6.86 16 20 O -0.52 -7.47 16.59 5.31 0.09 -7.38 16 21 C -0.05 -0.46 6.66 -82.68 -0.55 -1.01 16 22 C 0.04 0.35 12.05 -16.84 -0.20 0.15 16 23 N -0.29 -2.55 12.01 30.90 0.37 -2.18 16 24 N -0.15 -1.02 4.35 -16.63 -0.07 -1.10 16 25 C 0.10 0.19 11.55 59.85 0.69 0.88 16 26 N -0.24 -1.97 7.15 33.42 0.24 -1.73 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.43 6.55 -51.93 -0.34 0.09 16 30 H 0.08 0.50 8.05 -51.93 -0.42 0.09 16 31 H 0.09 0.70 5.78 -51.93 -0.30 0.40 16 32 H 0.09 0.58 8.07 -51.93 -0.42 0.16 16 33 H 0.09 0.90 7.50 -51.93 -0.39 0.51 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.40 4.03 8.47 -40.82 -0.35 3.69 16 37 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 38 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 39 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.21 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 42 H 0.11 0.02 8.14 -51.93 -0.42 -0.40 16 43 H 0.11 0.06 8.14 -51.93 -0.42 -0.36 16 LS Contribution 384.26 15.07 5.79 5.79 Total: -1.00 -39.09 384.26 -6.28 -45.37 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -5.98 Total: -0.75 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 0.47 Total: 3.42 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.50 Total: -47.06 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.18 Total: -19.43 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.09 -6.28 -45.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721134457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.356 kcal (2) G-P(sol) polarization free energy of solvation -39.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds