Wall clock time and date at job start Sat Apr 11 2020 06:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47094 * 2 1 4 4 C 1.46498 * 119.99711 * 263.71297 * 3 2 1 5 5 C 1.52998 * 109.47468 * 269.99838 * 4 3 2 6 6 N 1.46498 * 109.47468 * 179.97438 * 5 4 3 7 7 C 1.34775 * 119.99974 * 179.97438 * 6 5 4 8 8 O 1.21274 * 120.00196 * 0.02562 * 7 6 5 9 9 C 1.50709 * 119.99830 * 180.02562 * 7 6 5 10 10 S 1.80994 * 109.47071 * 180.02562 * 9 7 6 11 11 C 1.76198 * 100.00038 * 180.02562 * 10 9 7 12 12 H 1.07998 * 119.99961 * 0.02562 * 11 10 9 13 13 C 1.38800 * 120.00211 * 179.97438 * 11 10 9 14 14 N 1.31625 * 120.00464 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 119.99777 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47004 * 89.99644 * 15 13 11 17 17 H 1.48494 * 109.46874 * 209.99567 * 15 13 11 18 18 H 1.48498 * 109.47159 * 329.99604 * 15 13 11 19 19 C 1.34780 * 120.00134 * 83.71432 * 3 2 1 20 20 O 1.21554 * 119.99972 * 184.38743 * 19 3 2 21 21 C 1.47865 * 120.00109 * 4.39015 * 19 3 2 22 22 N 1.34553 * 126.04761 * 353.84051 * 21 19 3 23 23 C 1.30865 * 107.27128 * 179.97438 * 22 21 19 24 24 N 1.34586 * 107.62271 * 0.02562 * 23 22 21 25 25 C 1.46498 * 125.74701 * 180.02562 * 24 23 22 26 26 N 1.28847 * 108.50624 * 359.74602 * 24 23 22 27 27 H 1.09000 * 109.47153 * 60.00470 * 1 2 3 28 28 H 1.09001 * 109.47226 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47239 * 300.00333 * 1 2 3 30 30 H 1.08997 * 109.47571 * 239.99904 * 2 1 3 31 31 H 1.09000 * 109.47153 * 119.99530 * 2 1 3 32 32 H 1.09000 * 109.47224 * 30.00230 * 4 3 2 33 33 H 1.09008 * 109.46814 * 150.00129 * 4 3 2 34 34 H 1.09000 * 109.47218 * 300.00395 * 5 4 3 35 35 H 1.09001 * 109.47085 * 60.00027 * 5 4 3 36 36 H 0.97002 * 119.99501 * 0.02562 * 6 5 4 37 37 H 1.08996 * 109.46831 * 300.00402 * 9 7 6 38 38 H 1.08996 * 109.46565 * 60.00278 * 9 7 6 39 39 H 0.96992 * 120.00832 * 180.02562 * 14 13 11 40 40 H 1.08000 * 126.19053 * 180.02562 * 23 22 21 41 41 H 1.09001 * 109.47617 * 89.99385 * 25 24 23 42 42 H 1.09008 * 109.47180 * 209.99775 * 25 24 23 43 43 H 1.09007 * 109.47409 * 329.99530 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3934 2.0254 -1.2611 5 6 3.8758 1.7719 -1.5422 6 7 4.2508 2.4156 -2.8037 7 6 5.5173 2.3256 -3.2557 8 8 6.3464 1.7113 -2.6185 9 6 5.9032 2.9883 -4.5531 10 16 7.6568 2.6881 -4.8857 11 6 7.8303 3.5491 -6.4132 12 1 6.9796 4.0514 -6.8496 13 6 9.0604 3.5827 -7.0551 14 7 9.1902 4.2262 -8.1959 15 14 10.5320 2.7145 -6.2999 16 1 10.5902 1.3162 -6.7965 17 1 11.7772 3.4277 -6.6820 18 1 10.3984 2.7094 -4.8210 19 6 2.1224 2.0592 1.1602 20 8 2.4511 3.2294 1.1529 21 6 1.8370 1.3795 2.4419 22 7 1.3549 0.1316 2.5862 23 6 1.2437 -0.0960 3.8701 24 7 1.6559 1.0098 4.5171 25 6 1.6968 1.1856 5.9709 26 7 2.0140 1.8857 3.6426 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.7939 1.6126 -2.0724 33 1 2.2159 3.0985 -1.1878 34 1 4.4753 2.1847 -0.7309 35 1 4.0534 0.6989 -1.6155 36 1 3.5877 2.9072 -3.3131 37 1 5.3039 2.5751 -5.3644 38 1 5.7253 4.0611 -4.4799 39 1 10.0497 4.2494 -8.6447 40 1 0.8859 -1.0064 4.3278 41 1 2.6663 0.8613 6.3491 42 1 1.5452 2.2374 6.2142 43 1 0.9092 0.5891 6.4314 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721134599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:01 Heat of formation + Delta-G solvation = 39.448432 kcal Electronic energy + Delta-G solvation = -26266.307035 eV Core-core repulsion = 22283.008911 eV Total energy + Delta-G solvation = -3983.298124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.93209 -40.17216 -39.10631 -36.60090 -35.26582 -34.47536 -32.40326 -32.23016 -31.47963 -29.98539 -28.88743 -27.57082 -25.58388 -24.71457 -23.68308 -23.14946 -22.19267 -20.56620 -19.83870 -18.03031 -17.79437 -17.30884 -17.00615 -16.85704 -16.26895 -16.13157 -15.41543 -15.19620 -15.08220 -14.88333 -14.40264 -14.20902 -13.98430 -13.78876 -13.69521 -13.65267 -13.23668 -12.92229 -12.76021 -12.43703 -12.30822 -12.16607 -12.03575 -11.56540 -11.38254 -11.23016 -10.97402 -10.86666 -10.63188 -10.58345 -10.37030 -10.03284 -9.82655 -9.51565 -9.03854 -8.98545 -8.92531 -8.45635 -6.87543 -6.25309 -3.96680 0.96901 1.61165 1.67635 2.39775 2.86279 2.99464 3.03353 3.35464 3.39723 3.54347 3.56571 3.74711 3.84017 4.12477 4.36855 4.37964 4.48878 4.67609 4.68585 4.73917 4.79992 4.84609 5.09337 5.13763 5.22598 5.25936 5.34735 5.39275 5.50997 5.64905 5.70369 5.82033 5.83184 5.86991 5.89981 6.06474 6.14257 6.24452 6.55522 6.91838 7.47393 7.64174 7.82008 7.97774 8.45442 8.54023 9.20989 10.83906 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.024063 B = 0.001837 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.311245 B =15238.213086 C =15737.015126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.094 3.906 3 N -0.591 5.591 4 C 0.107 3.893 5 C 0.107 3.893 6 N -0.734 5.734 7 C 0.532 3.468 8 O -0.519 6.519 9 C -0.123 4.123 10 S -0.142 6.142 11 C -0.521 4.521 12 H 0.088 0.912 13 C 0.096 3.904 14 N -0.881 5.881 15 Si 0.856 3.144 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 C 0.615 3.385 20 O -0.512 6.512 21 C 0.146 3.854 22 N -0.477 5.477 23 C 0.188 3.812 24 N -0.304 5.304 25 C 0.084 3.916 26 N -0.250 5.250 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.400 0.600 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.270 0.730 40 H 0.227 0.773 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.110 -11.457 27.797 38.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.028 4.028 3 N -0.325 5.325 4 C -0.016 4.016 5 C -0.018 4.018 6 N -0.389 5.389 7 C 0.318 3.682 8 O -0.393 6.393 9 C -0.274 4.274 10 S 0.084 5.916 11 C -0.668 4.668 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.681 3.319 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.159 1.159 19 C 0.398 3.602 20 O -0.384 6.384 21 C -0.133 4.133 22 N -0.203 5.203 23 C -0.107 4.107 24 N -0.099 5.099 25 C -0.057 4.057 26 N -0.089 5.089 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.131 0.869 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.234 0.766 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.243 0.757 41 H 0.111 0.889 42 H 0.119 0.881 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -22.255 -11.355 28.567 37.951 hybrid contribution -0.715 0.339 -0.555 0.966 sum -22.970 -11.016 28.012 37.863 Atomic orbital electron populations 1.22020 0.95540 1.02120 1.01592 1.22094 0.94961 0.80927 1.04850 1.47532 1.64354 1.15232 1.05347 1.21650 0.94733 1.00230 0.84989 1.21587 0.94798 0.98490 0.86960 1.45778 1.11689 1.57150 1.24297 1.20272 0.81332 0.79976 0.86657 1.90701 1.49383 1.41121 1.58102 1.23273 1.03709 1.03763 0.96636 1.84796 1.03991 1.72191 1.30642 1.22325 1.00687 1.38339 1.05483 0.89357 1.24709 0.98304 0.94224 0.94069 1.69933 1.25604 1.40785 1.15413 0.86736 0.82221 0.80338 0.82574 1.19224 1.19970 1.15909 1.16354 0.77640 0.85057 0.81118 1.90864 1.46408 1.14990 1.86103 1.23616 1.05673 0.90743 0.93274 1.71456 1.19347 1.14242 1.15293 1.26664 1.00976 0.94545 0.88542 1.47407 1.43298 1.10245 1.08941 1.22293 1.04964 1.06137 0.72271 1.74380 1.18029 1.17767 0.98758 0.93190 0.91528 0.92524 0.90478 0.86872 0.89173 0.88737 0.91229 0.91324 0.76565 0.88409 0.88342 0.91972 0.75717 0.88947 0.88073 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.74 37.16 0.36 -0.68 16 2 C 0.09 0.74 5.70 -4.04 -0.02 0.71 16 3 N -0.59 -6.07 2.49 -174.79 -0.43 -6.51 16 4 C 0.11 1.03 5.53 -4.04 -0.02 1.01 16 5 C 0.11 1.35 6.00 -4.04 -0.02 1.32 16 6 N -0.73 -9.84 5.56 -60.29 -0.33 -10.18 16 7 C 0.53 9.88 7.85 -10.98 -0.09 9.79 16 8 O -0.52 -11.76 15.86 5.56 0.09 -11.68 16 9 C -0.12 -2.44 6.16 36.01 0.22 -2.22 16 10 S -0.14 -3.70 18.55 -107.50 -1.99 -5.70 16 11 C -0.52 -15.25 10.04 30.94 0.31 -14.94 16 12 H 0.09 2.69 8.03 -52.49 -0.42 2.26 16 13 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 14 N -0.88 -26.90 13.97 55.49 0.78 -26.12 16 15 Si 0.86 22.17 27.74 -169.99 -4.72 17.46 16 16 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.24 -6.11 6.74 56.52 0.38 -5.72 16 19 C 0.61 8.01 7.63 -12.32 -0.09 7.92 16 20 O -0.51 -8.42 16.64 5.32 0.09 -8.33 16 21 C 0.15 1.67 7.49 -156.35 -1.17 0.50 16 22 N -0.48 -3.94 6.69 -12.37 -0.08 -4.02 16 23 C 0.19 0.91 12.62 -90.48 -1.14 -0.23 16 24 N -0.30 -1.84 3.72 -69.39 -0.26 -2.10 16 25 C 0.08 0.08 11.38 59.85 0.68 0.76 16 26 N -0.25 -2.76 12.09 32.07 0.39 -2.37 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.46 7.12 -51.93 -0.37 0.09 16 30 H 0.08 0.52 8.02 -51.93 -0.42 0.10 16 31 H 0.11 0.95 5.26 -51.93 -0.27 0.67 16 32 H 0.09 0.63 8.07 -51.93 -0.42 0.21 16 33 H 0.09 0.98 7.37 -51.92 -0.38 0.60 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.40 4.01 8.47 -40.82 -0.35 3.66 16 37 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 38 H 0.10 1.83 8.14 -51.92 -0.42 1.40 16 39 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 40 H 0.23 -0.10 8.06 -52.49 -0.42 -0.52 16 41 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 42 H 0.10 0.12 8.14 -51.92 -0.42 -0.30 16 43 H 0.10 -0.25 8.14 -51.93 -0.42 -0.68 16 LS Contribution 381.87 15.07 5.75 5.75 Total: -1.00 -41.16 381.87 -7.82 -48.98 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -6.01 Total: -1.85 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -1.08 Total: 6.66 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.05 Total: -51.30 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: 0.18 Total: -20.01 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.72 Total: 17.46 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.70 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -41.16 -7.82 -48.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721134599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.430 kcal (2) G-P(sol) polarization free energy of solvation -41.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds