Wall clock time and date at job start Sat Apr 11 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46917 * 2 1 4 4 C 1.53003 * 109.46853 * 120.00461 * 2 1 3 5 5 N 1.46499 * 109.46708 * 294.99623 * 4 2 1 6 6 C 1.34784 * 119.99893 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99649 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99774 * 179.72962 * 6 5 4 9 9 S 1.81008 * 109.46759 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99946 * 179.97438 * 9 8 6 11 11 H 1.08000 * 119.99996 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00252 * 179.97438 * 10 9 8 13 13 N 1.31635 * 119.99702 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00159 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47247 * 59.99814 * 14 12 10 16 16 H 1.48504 * 109.46907 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47096 * 299.99984 * 14 12 10 18 18 C 1.53001 * 109.47100 * 240.00151 * 2 1 3 19 19 N 1.46497 * 109.47391 * 64.99897 * 18 2 1 20 20 C 1.34774 * 120.00109 * 179.97438 * 19 18 2 21 21 O 1.21552 * 120.00149 * 0.02562 * 20 19 18 22 22 C 1.47875 * 119.99790 * 180.02562 * 20 19 18 23 23 N 1.34546 * 126.04704 * 0.02609 * 22 20 19 24 24 C 1.30871 * 107.26543 * 179.97438 * 23 22 20 25 25 N 1.34576 * 107.62709 * 0.02562 * 24 23 22 26 26 C 1.46507 * 125.75044 * 180.02562 * 25 24 23 27 27 N 1.28848 * 108.50670 * 359.72580 * 25 24 23 28 28 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47478 * 299.99935 * 1 2 3 30 30 H 1.09005 * 109.47003 * 60.00012 * 1 2 3 31 31 H 1.08998 * 109.46692 * 175.00125 * 4 2 1 32 32 H 1.08994 * 109.47584 * 54.99989 * 4 2 1 33 33 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 34 34 H 1.09001 * 109.46809 * 299.99238 * 8 6 5 35 35 H 1.08993 * 109.47525 * 59.99679 * 8 6 5 36 36 H 0.97000 * 119.99806 * 179.97438 * 13 12 10 37 37 H 1.09001 * 109.47203 * 185.00287 * 18 2 1 38 38 H 1.08997 * 109.47065 * 304.99977 * 18 2 1 39 39 H 0.97005 * 119.99459 * 0.02562 * 19 18 2 40 40 H 1.08000 * 126.18519 * 180.02562 * 24 23 22 41 41 H 1.08998 * 109.47305 * 89.99232 * 26 25 24 42 42 H 1.08999 * 109.46812 * 209.99990 * 26 25 24 43 43 H 1.08998 * 109.46585 * 329.99139 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6524 0.0353 2.4423 6 6 1.9963 -0.4132 3.6659 7 8 2.6271 -1.4429 3.7791 8 6 1.6029 0.3683 4.8929 9 16 2.2062 -0.4851 6.3708 10 6 1.6239 0.6147 7.6182 11 1 1.0748 1.5026 7.3418 12 6 1.8709 0.3399 8.9561 13 7 2.5397 -0.7427 9.2931 14 14 1.2530 1.5055 10.2786 15 1 -0.2267 1.6038 10.1998 16 1 1.6449 0.9901 11.6151 17 1 1.8500 2.8494 10.0723 18 6 2.0400 -0.7212 -1.2493 19 7 1.6525 0.0353 -2.4424 20 6 1.9965 -0.4131 -3.6659 21 8 2.6279 -1.4455 -3.7795 22 6 1.6057 0.3510 -4.8702 23 7 0.9104 1.5027 -4.8861 24 6 0.7717 1.8555 -6.1387 25 7 1.3800 0.9228 -6.8945 26 6 1.4644 0.9280 -8.3571 27 7 1.8811 0.0277 -6.1148 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 3.1262 -0.7996 1.2055 32 1 1.6054 -1.7199 1.2951 33 1 1.1482 0.8590 2.3517 34 1 2.0416 1.3650 4.8449 35 1 0.5171 0.4510 4.9384 36 1 2.7126 -0.9346 10.2280 37 1 3.1263 -0.7995 -1.2056 38 1 1.6054 -1.7197 -1.2952 39 1 1.1489 0.8595 -2.3517 40 1 0.2615 2.7359 -6.5004 41 1 2.3639 1.4598 -8.6672 42 1 1.5048 -0.0982 -8.7223 43 1 0.5872 1.4263 -8.7698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721581081.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:07 Heat of formation + Delta-G solvation = 14.002709 kcal Electronic energy + Delta-G solvation = -25306.610041 eV Core-core repulsion = 21322.208508 eV Total energy + Delta-G solvation = -3984.401534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.96343 -39.96073 -39.18855 -37.04495 -35.18763 -34.49099 -32.41655 -32.33692 -32.27867 -29.40900 -28.68720 -27.10755 -25.82808 -25.34653 -23.95705 -22.66800 -21.05953 -20.70981 -20.33107 -18.64849 -17.78825 -17.33785 -16.97003 -16.74621 -16.19301 -16.02721 -15.75118 -15.26088 -15.10744 -14.78565 -14.56111 -14.32856 -13.92666 -13.85500 -13.77309 -13.59563 -13.09804 -12.92722 -12.86806 -12.53738 -12.47914 -11.89736 -11.53200 -11.33667 -11.18614 -11.02609 -11.02241 -11.01987 -10.97449 -10.75603 -10.61795 -10.11396 -9.80595 -9.43694 -9.38586 -9.04489 -8.86111 -8.21573 -6.47796 -6.19532 -3.90133 0.90932 1.56954 1.61666 2.58540 2.97961 3.07704 3.13058 3.24914 3.29169 3.33128 3.58373 3.73745 3.81268 4.16906 4.22433 4.31731 4.43065 4.49107 4.55076 4.58013 4.63590 5.09139 5.15466 5.17307 5.33383 5.36557 5.44300 5.51750 5.59772 5.65916 5.72521 5.74458 5.89479 5.90979 5.94011 5.94905 6.04893 6.15907 6.62511 7.00400 7.47911 7.61025 7.72194 7.79991 8.36864 8.64093 9.25553 10.87849 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.038686 B = 0.001420 C = 0.001382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.597452 B =19713.469793 C =20255.152614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 H 0.087 0.913 4 C 0.129 3.871 5 N -0.737 5.737 6 C 0.531 3.469 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.537 4.537 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.127 3.873 19 N -0.707 5.707 20 C 0.615 3.385 21 O -0.515 6.515 22 C 0.142 3.858 23 N -0.486 5.486 24 C 0.193 3.807 25 N -0.305 5.305 26 C 0.084 3.916 27 N -0.251 5.251 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.398 0.602 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.411 0.589 40 H 0.228 0.772 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.814 9.077 -36.962 38.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.134 4.134 3 H 0.105 0.895 4 C 0.004 3.996 5 N -0.393 5.393 6 C 0.317 3.683 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.200 1.200 18 C 0.003 3.997 19 N -0.360 5.360 20 C 0.397 3.603 21 O -0.387 6.387 22 C -0.138 4.138 23 N -0.211 5.211 24 C -0.103 4.103 25 N -0.100 5.100 26 C -0.056 4.056 27 N -0.090 5.090 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.247 0.753 40 H 0.244 0.756 41 H 0.110 0.890 42 H 0.120 0.880 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.964 6.039 -36.578 37.404 hybrid contribution -1.780 3.109 0.292 3.594 sum -6.744 9.148 -36.286 38.025 Atomic orbital electron populations 1.21908 0.93903 1.02931 1.02142 1.21595 0.97250 1.00854 0.93685 0.89508 1.21164 1.00343 0.95412 0.82694 1.45964 1.59712 1.28133 1.05457 1.20302 0.78697 0.85509 0.83768 1.90712 1.38256 1.23913 1.86168 1.23528 1.04803 1.03428 0.98641 1.85413 1.73076 1.32660 0.92173 1.22833 1.41825 1.10998 0.92838 0.90987 1.24985 0.94839 0.95789 0.97904 1.70011 1.37525 1.24492 1.18259 0.86231 0.79168 0.80362 0.79772 1.19948 1.20812 1.19956 1.21397 1.00896 0.95399 0.81958 1.45628 1.57432 1.28230 1.04698 1.16226 0.79556 0.83532 0.81025 1.90864 1.38989 1.22994 1.85898 1.23728 1.02877 0.94645 0.92550 1.71261 1.18242 1.11976 1.19646 1.26514 0.99867 0.97589 0.86326 1.47417 1.37044 1.16075 1.09483 1.22296 1.04968 1.06352 0.72019 1.74368 1.17937 1.14766 1.01961 0.91888 0.91821 0.92328 0.91161 0.91087 0.76817 0.89227 0.89247 0.92132 0.90388 0.90359 0.75308 0.75590 0.88953 0.88030 0.87797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.94 37.16 0.33 -0.71 16 2 C -0.11 -0.86 2.46 -90.62 -0.22 -1.08 16 3 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 4 C 0.13 1.41 5.06 -4.04 -0.02 1.39 16 5 N -0.74 -9.38 5.28 -60.30 -0.32 -9.70 16 6 C 0.53 9.82 7.85 -10.98 -0.09 9.73 16 7 O -0.52 -11.78 15.86 5.56 0.09 -11.69 16 8 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 11 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 12 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 13 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 14 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 C 0.13 1.08 5.06 -4.04 -0.02 1.06 16 19 N -0.71 -6.16 5.28 -61.24 -0.32 -6.48 16 20 C 0.62 7.21 7.83 -12.32 -0.10 7.11 16 21 O -0.52 -7.82 17.09 5.32 0.09 -7.73 16 22 C 0.14 1.51 7.96 -156.35 -1.24 0.27 16 23 N -0.49 -4.01 11.09 -12.36 -0.14 -4.15 16 24 C 0.19 0.89 12.62 -90.49 -1.14 -0.25 16 25 N -0.30 -1.67 3.72 -69.39 -0.26 -1.93 16 26 C 0.08 0.02 11.38 59.85 0.68 0.70 16 27 N -0.25 -2.56 12.08 32.08 0.39 -2.17 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.44 7.18 -51.93 -0.37 0.06 16 30 H 0.06 0.35 7.18 -51.93 -0.37 -0.03 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.40 3.85 7.65 -40.82 -0.31 3.54 16 34 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 35 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 36 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.41 2.89 7.37 -40.82 -0.30 2.59 16 40 H 0.23 -0.14 8.06 -52.49 -0.42 -0.57 16 41 H 0.09 -0.09 8.14 -51.93 -0.42 -0.51 16 42 H 0.10 0.04 8.14 -51.93 -0.42 -0.38 16 43 H 0.10 -0.32 8.14 -51.93 -0.42 -0.74 16 LS Contribution 388.50 15.07 5.85 5.85 Total: -1.00 -41.05 388.50 -8.49 -49.55 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -5.98 Total: -0.92 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.40 Total: 2.36 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.08 Total: -49.98 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.18 Total: -19.42 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -41.05 -8.49 -49.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721581081.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.550 kcal (2) G-P(sol) polarization free energy of solvation -41.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds