Wall clock time and date at job start Sat Apr 11 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47197 * 2 1 4 4 C 1.52999 * 109.47141 * 240.00094 * 2 1 3 5 5 N 1.46499 * 109.47277 * 65.00144 * 4 2 1 6 6 C 1.34770 * 120.00144 * 179.97438 * 5 4 2 7 7 O 1.21291 * 119.99957 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.00374 * 179.97438 * 6 5 4 9 9 S 1.80992 * 109.47181 * 180.02562 * 8 6 5 10 10 C 1.76206 * 99.99949 * 179.97438 * 9 8 6 11 11 H 1.07996 * 119.99721 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00207 * 179.97438 * 10 9 8 13 13 N 1.31634 * 119.99611 * 0.02562 * 12 10 9 14 14 Si 1.86791 * 120.00046 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47041 * 60.00477 * 14 12 10 16 16 H 1.48509 * 109.47199 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47518 * 300.00457 * 14 12 10 18 18 C 1.52997 * 109.47131 * 119.99652 * 2 1 3 19 19 N 1.46499 * 109.47555 * 295.00471 * 18 2 1 20 20 C 1.34777 * 120.00199 * 180.02562 * 19 18 2 21 21 O 1.21283 * 119.99750 * 359.97438 * 20 19 18 22 22 C 1.50702 * 119.99928 * 180.27479 * 20 19 18 23 23 C 1.50700 * 109.46869 * 179.72354 * 22 20 19 24 24 N 1.33241 * 125.52584 * 269.68822 * 23 22 20 25 25 C 1.30830 * 109.82844 * 179.85606 * 24 23 22 26 26 N 1.34430 * 108.07674 * 0.40877 * 25 24 23 27 27 H 0.96998 * 126.81705 * 179.78890 * 26 25 24 28 28 N 1.30706 * 125.52779 * 90.00107 * 23 22 20 29 29 H 1.09001 * 109.46729 * 60.00082 * 1 2 3 30 30 H 1.08998 * 109.46866 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47088 * 300.00459 * 1 2 3 32 32 H 1.09007 * 109.46969 * 184.99749 * 4 2 1 33 33 H 1.08996 * 109.46836 * 304.99861 * 4 2 1 34 34 H 0.97004 * 120.00010 * 359.97438 * 5 4 2 35 35 H 1.09007 * 109.46692 * 299.99887 * 8 6 5 36 36 H 1.08997 * 109.46856 * 59.99818 * 8 6 5 37 37 H 0.97004 * 119.99702 * 179.97438 * 13 12 10 38 38 H 1.08998 * 109.47382 * 175.00033 * 18 2 1 39 39 H 1.09002 * 109.47216 * 55.00470 * 18 2 1 40 40 H 0.97000 * 119.99484 * 359.97438 * 19 18 2 41 41 H 1.09004 * 109.46965 * 299.72211 * 22 20 19 42 42 H 1.08994 * 109.46990 * 59.72065 * 22 20 19 43 43 H 1.08001 * 125.95877 * 180.12478 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6525 0.0354 -2.4424 6 6 1.9965 -0.4130 -3.6659 7 8 2.6273 -1.4427 -3.7791 8 6 1.5974 0.3650 -4.8933 9 16 2.2008 -0.4882 -6.3711 10 6 1.6102 0.6066 -7.6191 11 1 1.0569 1.4920 -7.3429 12 6 1.8560 0.3310 -8.9570 13 7 2.5300 -0.7484 -9.2936 14 14 1.2292 1.4912 -10.2800 15 1 1.8196 2.8386 -10.0770 16 1 1.6202 0.9753 -11.6166 17 1 -0.2507 1.5818 -10.1984 18 6 2.0400 -0.7212 1.2493 19 7 1.6524 0.0354 2.4424 20 6 1.9964 -0.4130 3.6660 21 8 2.6265 -1.4431 3.7792 22 6 1.5923 0.3620 4.8936 23 6 2.0905 -0.3509 6.1243 24 7 1.4178 -1.2746 6.8096 25 6 2.1385 -1.6907 7.8190 26 7 3.3044 -1.0217 7.8030 27 1 4.0376 -1.1164 8.4310 28 7 3.2502 -0.1594 6.6958 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.1264 -0.7994 -1.2056 33 1 1.6054 -1.7197 -1.2951 34 1 1.1483 0.8591 -2.3518 35 1 0.5109 0.4424 -4.9371 36 1 2.0312 1.3639 -4.8473 37 1 2.7015 -0.9412 -10.2287 38 1 3.1263 -0.7994 1.2057 39 1 1.6054 -1.7198 1.2952 40 1 1.1488 0.8594 2.3517 41 1 2.0263 1.3611 4.8517 42 1 0.5058 0.4392 4.9332 43 1 1.8458 -2.4378 8.5420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721581295.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:13 Heat of formation + Delta-G solvation = 1.677039 kcal Electronic energy + Delta-G solvation = -25185.665655 eV Core-core repulsion = 21200.729641 eV Total energy + Delta-G solvation = -3984.936015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.56660 -40.09139 -39.24057 -37.09986 -34.54695 -33.80078 -32.47920 -32.41597 -32.06302 -29.78140 -29.23570 -27.06286 -25.63638 -25.16361 -23.29640 -21.72529 -21.01611 -20.43206 -20.19337 -18.81832 -17.91055 -17.50689 -16.76933 -16.27287 -16.23414 -15.70475 -15.65107 -15.52766 -15.17126 -14.79999 -14.60478 -14.09708 -13.95418 -13.79748 -13.64372 -13.17380 -13.12417 -12.91571 -12.61958 -12.56143 -12.44635 -11.90874 -11.55941 -11.37183 -11.22517 -11.04175 -11.03512 -10.76728 -10.68716 -10.52089 -10.36538 -10.03801 -9.82133 -9.45585 -9.41102 -9.06009 -8.89461 -8.23438 -6.49600 -6.21025 -3.91818 1.14108 2.15036 2.27227 2.30060 2.84027 3.08788 3.10215 3.23724 3.28151 3.32211 3.58851 3.72611 4.11547 4.20946 4.31509 4.42748 4.44924 4.53570 4.56717 4.83179 4.97603 5.04736 5.13998 5.14364 5.31581 5.37385 5.46363 5.56802 5.63048 5.68803 5.71107 5.88038 5.88717 5.90118 5.93085 6.03773 6.13397 6.54534 6.59231 7.05768 7.59463 7.59499 7.68952 7.83069 8.35309 8.61232 9.24048 10.86343 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.048403 B = 0.001348 C = 0.001332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.342346 B =20761.162460 C =21022.039864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 H 0.085 0.915 4 C 0.128 3.872 5 N -0.738 5.738 6 C 0.531 3.469 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.537 4.537 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.127 3.873 19 N -0.727 5.727 20 C 0.521 3.479 21 O -0.527 6.527 22 C -0.049 4.049 23 C 0.246 3.754 24 N -0.535 5.535 25 C 0.264 3.736 26 N -0.483 5.483 27 H 0.443 0.557 28 N -0.303 5.303 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.397 0.603 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.269 0.731 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.402 0.598 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.589 5.016 35.631 36.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.134 4.134 3 H 0.103 0.897 4 C 0.003 3.997 5 N -0.393 5.393 6 C 0.317 3.683 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C 0.003 3.997 19 N -0.380 5.380 20 C 0.305 3.695 21 O -0.403 6.403 22 C -0.091 4.091 23 C -0.037 4.037 24 N -0.263 5.263 25 C -0.035 4.035 26 N -0.201 5.201 27 H 0.288 0.712 28 N -0.133 5.133 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.237 0.763 41 H 0.137 0.863 42 H 0.142 0.858 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -2.822 2.806 34.996 35.222 hybrid contribution -1.159 2.430 -0.072 2.693 sum -3.981 5.236 34.925 35.539 Atomic orbital electron populations 1.21899 0.93938 1.02946 1.01999 1.21595 0.97161 1.00743 0.93865 0.89650 1.21168 1.00306 0.95432 0.82757 1.45961 1.59707 1.28137 1.05474 1.20312 0.78713 0.85490 0.83781 1.90716 1.38280 1.23869 1.86176 1.23529 1.04787 1.03442 0.98637 1.85419 1.72765 1.33004 0.92142 1.22829 1.41548 1.11324 0.92811 0.90984 1.24986 0.94838 0.95784 0.97915 1.70012 1.37393 1.24589 1.18274 0.86227 0.79183 0.80335 0.79766 1.19948 1.20804 1.19947 1.21305 1.00598 0.95417 0.82368 1.45873 1.58450 1.28093 1.05580 1.20174 0.79544 0.85659 0.84127 1.90767 1.38995 1.24034 1.86466 1.19878 1.03984 0.98859 0.86399 1.23261 0.88823 0.94830 0.96779 1.70356 1.33575 1.14891 1.07492 1.26092 0.83255 0.96882 0.97256 1.48082 1.17108 1.31081 1.23793 0.71186 1.77974 1.20377 1.15234 0.99681 0.91886 0.91887 0.92428 0.91255 0.91158 0.76844 0.89235 0.89242 0.92122 0.90858 0.90750 0.76343 0.86306 0.85816 0.75994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.94 37.16 0.33 -0.56 16 2 C -0.11 -0.77 2.46 -90.62 -0.22 -0.99 16 3 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 4 C 0.13 1.37 5.06 -4.04 -0.02 1.35 16 5 N -0.74 -9.14 5.28 -60.29 -0.32 -9.46 16 6 C 0.53 9.70 7.85 -10.99 -0.09 9.61 16 7 O -0.52 -11.71 15.86 5.55 0.09 -11.62 16 8 C -0.15 -3.04 6.16 36.01 0.22 -2.81 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 11 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.17 13.22 55.49 0.73 -25.43 16 14 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 C 0.13 0.98 5.06 -4.04 -0.02 0.96 16 19 N -0.73 -4.55 5.28 -60.29 -0.32 -4.87 16 20 C 0.52 4.70 7.82 -10.98 -0.09 4.61 16 21 O -0.53 -7.41 16.03 5.55 0.09 -7.32 16 22 C -0.05 -0.31 6.33 -29.03 -0.18 -0.49 16 23 C 0.25 2.35 6.63 -156.86 -1.04 1.31 16 24 N -0.54 -5.02 11.19 -11.98 -0.13 -5.15 16 25 C 0.26 1.48 13.13 -90.66 -1.19 0.29 16 26 N -0.48 -2.82 7.45 29.53 0.22 -2.60 16 27 H 0.44 0.89 8.96 -182.34 -1.63 -0.75 16 28 N -0.30 -2.94 12.80 32.42 0.41 -2.53 16 29 H 0.06 0.38 7.18 -51.93 -0.37 0.01 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.24 7.18 -51.93 -0.37 -0.14 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.40 3.68 7.65 -40.82 -0.31 3.36 16 35 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 36 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 37 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.40 1.22 7.66 -40.82 -0.31 0.91 16 41 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.22 0.08 8.06 -52.49 -0.42 -0.35 16 LS Contribution 387.22 15.07 5.84 5.84 Total: -1.00 -42.43 387.22 -9.92 -52.36 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -7.20 Total: -2.00 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -2.10 Total: 0.35 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.60 Total: -50.04 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: 0.18 Total: -18.94 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -42.43 -9.92 -52.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721581295.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.034 kcal (2) G-P(sol) polarization free energy of solvation -42.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds