Wall clock time and date at job start Sat Apr 11 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00165 * 2 1 4 4 C 1.53001 * 109.47186 * 89.99995 * 3 2 1 5 5 N 1.46500 * 109.47186 * 179.97438 * 4 3 2 6 6 C 1.46502 * 120.00077 * 270.00565 * 5 4 3 7 7 C 1.34773 * 119.99722 * 89.99910 * 5 4 3 8 8 O 1.21281 * 120.00442 * 0.02562 * 7 5 4 9 9 C 1.50705 * 119.99762 * 179.97438 * 7 5 4 10 10 N 1.46500 * 109.47081 * 180.02562 * 9 7 5 11 11 C 1.34429 * 126.81895 * 124.99841 * 10 9 7 12 12 N 1.30837 * 108.07952 * 180.02562 * 11 10 9 13 13 C 1.33246 * 109.82318 * 359.97438 * 12 11 10 14 14 N 1.30712 * 108.94935 * 0.27015 * 13 12 11 15 15 C 1.34780 * 119.99959 * 180.02562 * 2 1 3 16 16 O 1.21273 * 120.00095 * 179.97438 * 15 2 1 17 17 C 1.50698 * 119.99770 * 359.97438 * 15 2 1 18 18 S 1.81006 * 109.46988 * 179.97438 * 17 15 2 19 19 C 1.76193 * 99.99929 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00232 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00298 * 180.02562 * 19 18 17 22 22 N 1.31633 * 119.99459 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00498 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47082 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47335 * 119.99865 * 23 21 19 26 26 H 1.48495 * 109.47125 * 240.00342 * 23 21 19 27 27 H 1.08995 * 109.47513 * 89.99824 * 1 2 3 28 28 H 1.09007 * 109.47151 * 210.00046 * 1 2 3 29 29 H 1.09006 * 109.47083 * 329.99536 * 1 2 3 30 30 H 1.09004 * 109.47012 * 330.00378 * 3 2 1 31 31 H 1.09005 * 109.47096 * 210.00312 * 3 2 1 32 32 H 1.09004 * 109.46833 * 60.00273 * 4 3 2 33 33 H 1.08993 * 109.46950 * 300.00083 * 4 3 2 34 34 H 1.09004 * 109.46493 * 269.99739 * 6 5 4 35 35 H 1.08996 * 109.47228 * 29.99514 * 6 5 4 36 36 H 1.08998 * 109.47136 * 149.99971 * 6 5 4 37 37 H 1.09002 * 109.47196 * 60.00345 * 9 7 5 38 38 H 1.08995 * 109.47509 * 300.00521 * 9 7 5 39 39 H 1.08000 * 125.96340 * 359.97438 * 11 10 9 40 40 H 1.08002 * 125.52127 * 179.97438 * 13 12 11 41 41 H 1.08993 * 109.47220 * 300.00151 * 17 15 2 42 42 H 1.09010 * 109.47041 * 60.00415 * 17 15 2 43 43 H 0.96998 * 119.99799 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 7 3.1856 2.9788 1.4425 6 6 4.6506 2.9781 1.4426 7 6 2.5122 4.1462 1.4423 8 8 1.2994 4.1468 1.4426 9 6 3.2663 5.4510 1.4429 10 7 2.3148 6.5650 1.4432 11 6 2.2607 7.5781 2.3251 12 7 1.2724 8.3634 1.9812 13 6 0.6753 7.8868 0.8895 14 7 1.2745 6.7837 0.5254 15 6 2.1388 -1.1672 -0.0005 16 8 3.3516 -1.1673 -0.0010 17 6 1.3853 -2.4723 -0.0005 18 16 2.5615 -3.8481 -0.0020 19 6 1.4414 -5.2082 -0.0026 20 1 0.3761 -5.0305 -0.0024 21 6 1.9280 -6.5081 -0.0032 22 7 3.2264 -6.7247 -0.0029 23 14 0.7406 -7.9500 -0.0045 24 1 -0.6548 -7.4421 -0.0052 25 1 0.9667 -8.7764 -1.2174 26 1 0.9659 -8.7778 1.2076 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6084 2.0284 -0.5138 31 1 3.1499 1.1383 -0.5139 32 1 3.0416 0.9507 1.9563 33 1 1.5002 1.8407 1.9563 34 1 5.0138 2.9781 2.4703 35 1 5.0136 2.0880 0.9289 36 1 5.0143 3.8679 0.9287 37 1 3.8934 5.5087 0.5532 38 1 3.8926 5.5084 2.3331 39 1 2.9179 7.7188 3.1705 40 1 -0.1700 8.3364 0.3897 41 1 0.7590 -2.5302 0.8896 42 1 0.7583 -2.5298 -0.8904 43 1 3.5666 -7.6331 -0.0030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721696103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:21 Heat of formation + Delta-G solvation = 43.276888 kcal Electronic energy + Delta-G solvation = -26421.070150 eV Core-core repulsion = 22437.938040 eV Total energy + Delta-G solvation = -3983.132110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.42065 -40.38687 -39.39825 -36.37353 -35.23665 -34.46632 -32.45746 -31.55041 -31.28413 -29.13329 -28.13461 -27.19316 -26.13468 -25.49965 -23.66962 -22.34180 -22.30284 -19.79653 -19.27141 -18.03249 -17.74483 -17.55768 -16.83953 -16.47389 -16.33363 -15.87154 -15.48865 -15.26692 -14.95587 -14.83000 -14.43104 -14.04755 -13.92735 -13.79077 -13.55540 -13.26303 -13.11771 -12.93327 -12.78923 -12.57742 -12.53685 -12.29624 -12.20489 -11.89556 -11.14298 -11.09301 -11.04679 -10.77528 -10.69802 -10.36878 -10.11695 -9.91663 -9.82615 -9.48561 -9.33603 -9.10123 -8.51205 -8.26560 -6.53694 -6.24933 -3.95500 1.23844 1.74621 2.04343 2.43222 2.66262 2.95710 3.00113 3.19525 3.25237 3.29713 3.58177 3.76179 3.94758 4.00403 4.17489 4.33791 4.49427 4.62237 4.69998 4.83071 4.86063 4.99816 5.08127 5.10498 5.14552 5.27514 5.31897 5.44897 5.45701 5.61846 5.72373 5.78692 5.82411 5.87809 5.97228 6.08939 6.10798 6.33083 6.57257 6.83313 7.45812 7.57413 7.62285 7.73093 8.32641 8.46967 9.20839 10.82580 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.033486 B = 0.001812 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.975317 B =15449.040689 C =16015.963937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.622 5.622 3 C 0.106 3.894 4 C 0.102 3.898 5 N -0.609 5.609 6 C 0.069 3.931 7 C 0.499 3.501 8 O -0.508 6.508 9 C 0.113 3.887 10 N -0.372 5.372 11 C 0.254 3.746 12 N -0.544 5.544 13 C 0.193 3.807 14 N -0.289 5.289 15 C 0.534 3.466 16 O -0.517 6.517 17 C -0.151 4.151 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.131 0.869 39 H 0.219 0.781 40 H 0.217 0.783 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.892 27.339 4.276 27.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.358 5.358 3 C -0.018 4.018 4 C -0.022 4.022 5 N -0.344 5.344 6 C -0.074 4.074 7 C 0.284 3.716 8 O -0.381 6.381 9 C -0.014 4.014 10 N -0.163 5.163 11 C -0.042 4.042 12 N -0.271 5.271 13 C -0.110 4.110 14 N -0.115 5.115 15 C 0.322 3.678 16 O -0.391 6.391 17 C -0.301 4.301 18 S 0.164 5.836 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.138 0.862 38 H 0.149 0.851 39 H 0.235 0.765 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.905 27.004 3.814 27.339 hybrid contribution -1.921 -1.076 0.169 2.209 sum -0.016 25.928 3.983 26.233 Atomic orbital electron populations 1.21813 0.79260 1.03316 1.02012 1.47797 1.07055 1.05292 1.75672 1.21645 0.98399 0.85321 0.96456 1.21940 0.98112 0.83840 0.98279 1.47766 1.07437 1.05643 1.73604 1.21997 0.78622 1.04216 1.02602 1.20435 0.88449 0.85056 0.77646 1.90809 1.13232 1.86594 1.47512 1.21646 0.89744 0.83282 1.06679 1.50030 1.24825 1.19750 1.21725 1.26088 0.97105 0.85392 0.95659 1.70541 1.09752 1.31094 1.15717 1.26049 1.00428 0.91242 0.93301 1.78213 1.00964 1.18361 1.13982 1.20398 0.87941 0.84582 0.74900 1.90673 1.13695 1.86832 1.47918 1.23564 1.04585 0.97110 1.04852 1.85346 1.08111 0.93381 1.96717 1.22903 0.94356 0.92171 1.58846 0.90860 1.24995 0.95689 0.98395 0.94510 1.70027 1.11731 1.21575 1.46964 0.86112 0.80365 0.81092 0.77914 1.19597 1.20551 1.20555 0.92567 0.90500 0.91137 0.90555 0.89692 0.89382 0.89658 0.91750 0.89525 0.90998 0.86193 0.85128 0.76451 0.76680 0.89155 0.89181 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.24 59.84 0.61 1.50 16 2 N -0.62 -8.74 2.87 -181.57 -0.52 -9.26 16 3 C 0.11 1.29 5.73 -4.04 -0.02 1.27 16 4 C 0.10 1.10 5.73 -4.04 -0.02 1.08 16 5 N -0.61 -5.00 2.87 -181.57 -0.52 -5.52 16 6 C 0.07 0.32 10.24 59.85 0.61 0.93 16 7 C 0.50 4.60 7.71 -10.98 -0.08 4.52 16 8 O -0.51 -7.06 15.31 5.56 0.09 -6.97 16 9 C 0.11 0.58 5.59 -5.19 -0.03 0.55 16 10 N -0.37 -3.12 3.41 -63.81 -0.22 -3.34 16 11 C 0.25 1.79 12.63 -90.65 -1.14 0.64 16 12 N -0.54 -5.32 11.19 -15.83 -0.18 -5.50 16 13 C 0.19 1.89 13.03 -91.81 -1.20 0.70 16 14 N -0.29 -3.30 11.80 29.29 0.35 -2.96 16 15 C 0.53 9.81 7.69 -10.98 -0.08 9.73 16 16 O -0.52 -11.11 15.44 5.56 0.09 -11.03 16 17 C -0.15 -3.01 4.71 36.00 0.17 -2.84 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.53 -15.08 9.50 30.94 0.29 -14.79 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.88 13.22 55.49 0.73 -25.14 16 23 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.84 6.44 -51.92 -0.33 0.51 16 29 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 30 H 0.08 0.90 8.07 -51.93 -0.42 0.49 16 31 H 0.08 1.11 7.42 -51.93 -0.39 0.73 16 32 H 0.09 1.02 8.07 -51.93 -0.42 0.61 16 33 H 0.09 1.01 7.42 -51.93 -0.39 0.63 16 34 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.09 0.52 8.07 -51.93 -0.42 0.10 16 36 H 0.07 0.13 6.44 -51.93 -0.33 -0.20 16 37 H 0.12 0.39 7.40 -51.93 -0.38 0.00 16 38 H 0.13 0.11 8.05 -51.93 -0.42 -0.31 16 39 H 0.22 0.41 8.06 -52.49 -0.42 -0.01 16 40 H 0.22 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.09 1.67 7.40 -51.92 -0.38 1.29 16 42 H 0.09 1.69 8.11 -51.91 -0.42 1.27 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 385.35 15.07 5.81 5.81 Total: -1.00 -40.43 385.35 -8.57 -49.00 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -5.96 Total: -2.71 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -0.99 Total: 5.27 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.36 Total: -51.71 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.17 Total: -18.00 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -40.43 -8.57 -49.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721696103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.277 kcal (2) G-P(sol) polarization free energy of solvation -40.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds