Wall clock time and date at job start Sat Apr 11 2020 06:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40464 * 126.85791 * 2 1 4 4 H 0.96996 * 126.65630 * 0.02562 * 3 2 1 5 5 C 1.35158 * 106.70128 * 179.97438 * 3 2 1 6 6 C 1.50702 * 125.54095 * 179.97438 * 5 3 2 7 7 N 1.46900 * 109.47327 * 179.97438 * 6 5 3 8 8 C 1.46892 * 111.00160 * 185.40509 * 7 6 5 9 9 C 1.52996 * 115.55341 * 80.47782 * 8 7 6 10 10 N 1.46506 * 109.46864 * 35.10586 * 9 8 7 11 11 C 1.34771 * 119.99734 * 175.35648 * 10 9 8 12 12 O 1.21281 * 120.00411 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.99984 * 179.97438 * 11 10 9 14 14 S 1.80990 * 109.47316 * 180.02562 * 13 11 10 15 15 C 1.76201 * 100.00187 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99801 * 359.97438 * 15 14 13 17 17 C 1.38799 * 120.00277 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99706 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00052 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46922 * 90.00380 * 19 17 15 21 21 H 1.48497 * 109.47411 * 210.00334 * 19 17 15 22 22 H 1.48496 * 109.47233 * 330.00688 * 19 17 15 23 23 C 1.53003 * 117.49838 * 294.80762 * 8 7 6 24 24 C 1.52998 * 60.03531 * 252.49936 * 23 8 7 25 25 N 1.30737 * 108.92261 * 0.22656 * 5 3 2 26 26 C 1.34455 * 109.94061 * 359.62800 * 25 5 3 27 27 O 1.21725 * 125.92399 * 180.15606 * 26 25 5 28 28 H 1.08998 * 109.47140 * 89.99862 * 1 2 3 29 29 H 1.09000 * 109.47643 * 210.00039 * 1 2 3 30 30 H 1.09000 * 109.46971 * 329.99849 * 1 2 3 31 31 H 1.08996 * 109.46967 * 59.99355 * 6 5 3 32 32 H 1.09001 * 109.46663 * 299.99837 * 6 5 3 33 33 H 1.00907 * 110.99989 * 61.44479 * 7 6 5 34 34 H 1.08998 * 109.47274 * 155.09983 * 9 8 7 35 35 H 1.08990 * 109.47565 * 275.10576 * 9 8 7 36 36 H 0.96995 * 119.99758 * 355.35637 * 10 9 8 37 37 H 1.08999 * 109.47165 * 300.00691 * 13 11 10 38 38 H 1.08997 * 109.46704 * 60.00163 * 13 11 10 39 39 H 0.97006 * 119.99770 * 179.97438 * 18 17 15 40 40 H 1.09001 * 117.49513 * 0.02562 * 23 8 7 41 41 H 1.09006 * 117.49920 * 144.99440 * 23 8 7 42 42 H 1.09002 * 117.49891 * 107.49606 * 24 23 8 43 43 H 1.09000 * 117.49724 * 252.52026 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3076 1.1239 0.0000 4 1 2.0323 2.0540 0.0003 5 6 3.5764 0.6582 0.0006 6 6 4.8213 1.5074 0.0002 7 7 6.0063 0.6393 0.0017 8 6 7.2377 1.4297 0.1306 9 6 7.5908 1.8745 1.5513 10 7 7.1955 0.8320 2.5017 11 6 7.4946 0.9638 3.8092 12 8 8.0904 1.9456 4.1992 13 6 7.0875 -0.1083 4.7871 14 16 7.6271 0.3564 6.4510 15 6 7.0390 -1.0322 7.3624 16 1 6.5202 -1.8314 6.8539 17 6 7.2415 -1.0985 8.7339 18 7 6.8026 -2.1361 9.4145 19 14 8.1382 0.2840 9.6136 20 1 7.1571 1.3061 10.0584 21 1 8.8535 -0.2625 10.7946 22 1 9.1168 0.9076 8.6870 23 6 7.5903 2.3802 -1.0153 24 6 8.3951 1.0948 -0.8137 25 7 3.5482 -0.6489 -0.0040 26 6 2.2747 -1.0802 0.0006 27 8 1.9144 -2.2429 0.0008 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 4.8316 2.1373 0.8897 32 1 4.8319 2.1360 -0.8902 33 1 6.0323 0.0615 -0.8251 34 1 8.6653 2.0429 1.6229 35 1 7.0619 2.7985 1.7848 36 1 6.7187 0.0470 2.1900 37 1 6.0032 -0.2187 4.7747 38 1 7.5521 -1.0529 4.5046 39 1 6.9445 -2.1827 10.3730 40 1 6.9082 2.4193 -1.8647 41 1 8.0737 3.3225 -0.7571 42 1 8.2427 0.2879 -1.5305 43 1 9.4079 1.1913 -0.4224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723492052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:25 Heat of formation + Delta-G solvation = 63.915274 kcal Electronic energy + Delta-G solvation = -26628.746045 eV Core-core repulsion = 22646.508882 eV Total energy + Delta-G solvation = -3982.237162 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.60014 -39.79314 -38.55442 -37.52087 -35.14068 -33.92344 -33.32171 -32.37084 -31.81952 -29.79998 -28.26439 -26.42213 -25.96018 -25.48856 -23.03188 -22.03278 -21.57483 -20.28377 -20.05976 -18.85983 -17.77411 -17.14096 -16.74776 -16.67305 -16.34759 -15.98718 -15.64908 -15.28346 -15.01433 -14.85839 -14.75489 -14.40725 -13.95260 -13.70638 -13.61556 -13.42655 -13.27932 -13.09739 -12.74847 -12.72501 -12.21152 -12.01390 -11.82321 -11.43157 -11.36376 -11.19687 -10.96110 -10.56200 -10.52147 -10.44394 -10.10835 -9.80056 -9.43423 -9.01173 -8.94718 -8.86150 -8.79963 -8.42373 -6.84036 -6.22021 -3.93110 0.89990 0.99193 2.79226 2.96259 3.08040 3.16233 3.18479 3.36665 3.46210 3.47980 3.54941 3.77576 3.78725 4.28007 4.34851 4.36043 4.37663 4.39187 4.53931 4.61375 4.72205 4.85408 4.94734 5.00490 5.16352 5.16763 5.20114 5.38224 5.40505 5.45414 5.51112 5.62914 5.63982 5.68277 5.90430 6.16664 6.26031 6.64059 6.70345 6.80661 7.62725 7.85308 7.95421 8.01343 8.50579 8.63311 9.24063 10.87390 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009484 B = 0.002815 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.649834 B = 9944.396223 C =12178.213152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.447 5.447 3 N -0.500 5.500 4 H 0.445 0.555 5 C 0.397 3.603 6 C 0.130 3.870 7 N -0.631 5.631 8 C 0.037 3.963 9 C 0.171 3.829 10 N -0.723 5.723 11 C 0.530 3.470 12 O -0.529 6.529 13 C -0.122 4.122 14 S -0.145 6.145 15 C -0.519 4.519 16 H 0.088 0.912 17 C 0.095 3.905 18 N -0.881 5.881 19 Si 0.857 3.143 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.235 1.235 23 C -0.204 4.204 24 C -0.162 4.162 25 N -0.546 5.546 26 C 0.634 3.366 27 O -0.532 6.532 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.363 0.637 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.413 0.587 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.270 0.730 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.956 13.556 -27.988 32.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.278 5.278 3 N -0.231 5.231 4 H 0.292 0.708 5 C 0.121 3.879 6 C -0.002 4.002 7 N -0.263 5.263 8 C -0.056 4.056 9 C 0.046 3.954 10 N -0.379 5.379 11 C 0.315 3.685 12 O -0.404 6.404 13 C -0.273 4.273 14 S 0.082 5.918 15 C -0.667 4.667 16 H 0.106 0.894 17 C -0.114 4.114 18 N -0.518 5.518 19 Si 0.682 3.318 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.159 1.159 23 C -0.244 4.244 24 C -0.199 4.199 25 N -0.295 5.295 26 C 0.333 3.667 27 O -0.402 6.402 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.098 0.902 31 H 0.134 0.866 32 H 0.092 0.908 33 H 0.184 0.816 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.250 0.750 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.080 0.920 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.009 13.411 -26.502 30.518 hybrid contribution -1.639 0.285 -0.900 1.891 sum -8.648 13.696 -27.403 31.832 Atomic orbital electron populations 1.21864 0.73311 1.04845 1.03172 1.49534 1.04770 0.99248 1.74284 1.44768 1.02705 1.03608 1.72057 0.70787 1.23785 0.85178 0.91688 0.87229 1.20517 0.83608 0.92119 1.03968 1.59640 0.98260 1.20702 1.47723 1.21900 0.91549 0.99974 0.92146 1.20627 1.00296 0.90847 0.83679 1.45836 1.60758 1.24880 1.06471 1.20271 0.78473 0.87387 0.82323 1.90683 1.40197 1.31351 1.78213 1.23257 1.05000 1.00352 0.98658 1.84688 1.76723 1.32430 0.97989 1.22347 1.42860 1.06067 0.95433 0.89356 1.24720 0.94490 0.95787 0.96387 1.69949 1.44766 1.28880 1.08217 0.86728 0.81673 0.82559 0.80833 1.19321 1.20033 1.15888 1.23585 1.04577 0.95783 1.00433 1.23372 0.96576 0.98708 1.01256 1.71904 1.19294 1.07470 1.30797 1.18411 0.83236 0.84822 0.80231 1.90987 1.78486 1.14502 1.56255 0.91221 0.88093 0.90157 0.86616 0.90780 0.81596 0.90656 0.91687 0.74956 0.88626 0.88415 0.92018 0.88549 0.87821 0.88066 0.87440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.57 11.46 59.85 0.69 1.25 16 2 N -0.45 -3.97 4.06 -72.07 -0.29 -4.26 16 3 N -0.50 -2.65 7.36 32.73 0.24 -2.41 16 4 H 0.45 0.42 8.96 -182.32 -1.63 -1.22 16 5 C 0.40 2.87 8.00 -155.11 -1.24 1.63 16 6 C 0.13 0.55 6.09 -4.98 -0.03 0.52 16 7 N -0.63 -3.93 5.19 -101.18 -0.53 -4.46 16 8 C 0.04 0.23 2.15 -131.56 -0.28 -0.06 16 9 C 0.17 1.64 5.73 -4.04 -0.02 1.61 16 10 N -0.72 -9.20 5.46 -60.29 -0.33 -9.53 16 11 C 0.53 9.45 7.85 -10.98 -0.09 9.36 16 12 O -0.53 -11.22 15.86 5.56 0.09 -11.13 16 13 C -0.12 -2.47 6.16 36.01 0.22 -2.25 16 14 S -0.14 -3.74 18.55 -107.50 -1.99 -5.74 16 15 C -0.52 -15.38 10.04 30.94 0.31 -15.07 16 16 H 0.09 2.75 8.03 -52.49 -0.42 2.33 16 17 C 0.09 2.83 5.50 -17.43 -0.10 2.73 16 18 N -0.88 -27.23 13.97 55.49 0.78 -26.45 16 19 Si 0.86 22.14 27.74 -169.99 -4.71 17.42 16 20 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.23 -6.03 6.74 56.52 0.38 -5.65 16 23 C -0.20 -0.84 9.67 -26.73 -0.26 -1.10 16 24 C -0.16 -0.87 9.88 -26.69 -0.26 -1.13 16 25 N -0.55 -6.69 10.80 -13.82 -0.15 -6.84 16 26 C 0.63 8.92 8.97 -87.01 -0.78 8.14 16 27 O -0.53 -9.74 17.91 5.17 0.09 -9.65 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.10 0.63 8.12 -51.93 -0.42 0.21 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.12 0.46 8.00 -51.93 -0.42 0.04 16 32 H 0.07 0.10 7.64 -51.93 -0.40 -0.30 16 33 H 0.36 2.20 8.52 -39.29 -0.33 1.86 16 34 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.41 4.95 7.60 -40.82 -0.31 4.64 16 37 H 0.10 1.85 8.14 -51.92 -0.42 1.43 16 38 H 0.10 1.89 8.14 -51.92 -0.42 1.47 16 39 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 40 H 0.10 0.28 7.88 -51.93 -0.41 -0.13 16 41 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.10 0.48 8.08 -51.93 -0.42 0.06 16 43 H 0.11 0.62 8.05 -51.93 -0.42 0.21 16 LS Contribution 385.29 15.07 5.81 5.81 Total: -1.00 -41.80 385.29 -10.13 -51.93 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.28 Total: -0.34 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -1.84 Total: 5.65 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.28 Total: -53.95 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: 0.18 Total: -20.77 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.42 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -1.99 Total: -5.74 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -41.80 -10.13 -51.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723492052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.841 kcal (2) G-P(sol) polarization free energy of solvation -41.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds