Wall clock time and date at job start Sat Apr 11 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00004 * 2 1 4 4 C 1.53002 * 109.46826 * 66.04842 * 3 2 1 5 5 C 1.52997 * 109.47275 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.47512 * 179.97438 * 5 4 3 7 7 C 1.46504 * 119.99885 * 89.99913 * 6 5 4 8 8 C 1.34770 * 119.99952 * 269.99931 * 6 5 4 9 9 O 1.21569 * 119.99945 * 5.45123 * 8 6 5 10 10 C 1.47749 * 120.00275 * 185.44471 * 8 6 5 11 11 C 1.39348 * 124.12015 * 186.05668 * 10 8 6 12 12 N 1.30099 * 112.14584 * 179.84937 * 11 10 8 13 13 S 1.55921 * 108.75290 * 0.40294 * 12 11 10 14 14 N 1.31492 * 124.11259 * 6.35605 * 10 8 6 15 15 C 1.46901 * 111.00127 * 236.05102 * 2 1 3 16 16 C 1.50706 * 109.46749 * 293.95133 * 15 2 1 17 17 O 1.21284 * 119.99960 * 0.02562 * 16 15 2 18 18 N 1.34781 * 119.99339 * 180.02562 * 16 15 2 19 19 C 1.37102 * 119.99345 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99926 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99718 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00128 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99981 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47104 * 60.00098 * 23 21 19 25 25 H 1.48501 * 109.47168 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47042 * 300.00022 * 23 21 19 27 27 H 1.09003 * 109.47114 * 60.00014 * 1 2 3 28 28 H 1.09001 * 109.47013 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46982 * 299.99776 * 1 2 3 30 30 H 1.08994 * 109.47271 * 306.05004 * 3 2 1 31 31 H 1.09001 * 109.47136 * 186.04405 * 3 2 1 32 32 H 1.09000 * 109.47503 * 60.00048 * 4 3 2 33 33 H 1.09001 * 109.46906 * 299.99703 * 4 3 2 34 34 H 1.09005 * 109.47362 * 59.99501 * 5 4 3 35 35 H 1.09004 * 109.47290 * 299.99773 * 5 4 3 36 36 H 1.08994 * 109.47019 * 95.38685 * 7 6 5 37 37 H 1.09001 * 109.46585 * 215.39389 * 7 6 5 38 38 H 1.09003 * 109.47041 * 335.38825 * 7 6 5 39 39 H 1.07996 * 123.92498 * 0.02562 * 11 10 8 40 40 H 1.08995 * 109.47742 * 53.95108 * 15 2 1 41 41 H 1.09003 * 109.47211 * 173.95172 * 15 2 1 42 42 H 0.96992 * 120.00696 * 0.02562 * 18 16 15 43 43 H 0.97001 * 120.00171 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1791 3.4859 1.3182 6 7 1.8301 4.1430 2.5802 7 6 2.7381 4.0565 3.7267 8 6 0.6737 4.8269 2.6866 9 8 -0.1251 4.8166 1.7702 10 6 0.3767 5.5893 3.9168 11 6 -0.8375 6.2249 4.1686 12 7 -0.8471 6.8246 5.3231 13 16 0.5374 6.6142 6.0087 14 7 1.2281 5.7553 4.9051 15 6 1.9954 -0.7659 -1.1376 16 6 1.6369 -2.2204 -0.9729 17 8 1.0047 -2.5831 -0.0035 18 7 2.0190 -3.1180 -1.9029 19 6 1.6924 -4.4411 -1.7534 20 1 1.1294 -4.7641 -0.8902 21 6 2.0866 -5.3666 -2.7118 22 7 2.7721 -4.9737 -3.7619 23 14 1.6411 -7.1693 -2.5084 24 1 0.1637 -7.3114 -2.4588 25 1 2.1740 -7.9436 -3.6580 26 1 2.2308 -7.6856 -1.2471 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.5611 1.9274 -0.8308 31 1 3.0797 1.3444 -0.1082 32 1 2.0658 1.5015 2.1492 33 1 0.5471 2.0844 1.4265 34 1 1.7444 4.0417 0.4873 35 1 3.2634 3.4594 1.2097 36 1 3.3769 4.9393 3.7516 37 1 2.1569 4.0023 4.6472 38 1 3.3561 3.1633 3.6341 39 1 -1.6744 6.2179 3.4859 40 1 1.5612 -0.3872 -2.0628 41 1 3.0797 -0.6610 -1.1757 42 1 2.5249 -2.8280 -2.6780 43 1 3.0477 -5.6198 -4.4308 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724843151.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:28 Heat of formation + Delta-G solvation = 12.970795 kcal Electronic energy + Delta-G solvation = -26348.857343 eV Core-core repulsion = 22364.411063 eV Total energy + Delta-G solvation = -3984.446281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.65599 -39.61125 -38.59485 -36.90097 -35.97727 -34.16881 -33.81849 -31.98978 -31.19421 -28.25322 -27.84942 -27.32257 -26.14331 -24.87886 -23.60316 -22.30100 -20.73599 -19.97500 -19.90720 -19.09333 -17.80257 -17.56773 -16.68553 -16.60639 -16.07473 -15.70027 -15.46340 -15.35692 -14.82552 -14.60213 -14.33785 -14.03870 -13.67951 -13.38366 -13.30880 -13.25431 -13.03557 -12.57808 -12.24678 -12.02469 -11.98685 -11.84166 -11.62627 -11.58398 -11.44377 -11.19872 -11.17493 -11.13668 -10.86672 -10.56392 -10.42018 -10.36506 -10.18533 -9.71100 -9.43772 -9.02887 -8.39832 -7.94164 -7.79133 -6.38722 -3.79405 -0.07304 0.90313 1.08577 1.14023 2.52385 2.69706 3.22053 3.27392 3.31910 3.87499 3.94668 4.05448 4.17785 4.28557 4.62208 4.78182 4.90633 5.01782 5.05033 5.09631 5.19069 5.27138 5.28046 5.35584 5.51353 5.57300 5.66091 5.77404 5.80799 5.85429 6.01060 6.03895 6.06806 6.15636 6.28279 6.33837 6.65125 6.89016 7.34678 7.46417 7.57851 7.63884 8.09702 8.65611 9.21309 9.58130 10.10455 10.79020 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.032827 B = 0.001616 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.763041 B =17326.121162 C =17451.301547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.519 5.519 3 C 0.058 3.942 4 C -0.131 4.131 5 C 0.118 3.882 6 N -0.594 5.594 7 C 0.085 3.915 8 C 0.600 3.400 9 O -0.519 6.519 10 C 0.014 3.986 11 C 0.091 3.909 12 N -0.576 5.576 13 S 0.705 5.295 14 N -0.538 5.538 15 C 0.046 3.954 16 C 0.445 3.555 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.014 0.986 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.215 0.785 40 H 0.047 0.953 41 H 0.087 0.913 42 H 0.392 0.608 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.719 25.977 15.406 30.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.243 5.243 3 C -0.071 4.071 4 C -0.170 4.170 5 C -0.005 4.005 6 N -0.326 5.326 7 C -0.059 4.059 8 C 0.382 3.618 9 O -0.394 6.394 10 C -0.161 4.161 11 C -0.102 4.102 12 N -0.416 5.416 13 S 0.748 5.252 14 N -0.389 5.389 15 C -0.086 4.086 16 C 0.230 3.770 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.199 1.199 27 H 0.032 0.968 28 H 0.112 0.888 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.231 0.769 40 H 0.065 0.935 41 H 0.105 0.895 42 H 0.225 0.775 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.796 26.065 17.703 31.519 hybrid contribution -0.664 -0.907 -2.745 2.966 sum 0.133 25.159 14.958 29.270 Atomic orbital electron populations 1.22556 0.86790 1.04240 0.99035 1.61557 1.08760 1.11343 1.42618 1.22026 1.00022 0.88983 0.96056 1.21930 1.02361 0.93924 0.98749 1.21605 1.00578 0.93407 0.84885 1.47654 1.19765 1.50712 1.14420 1.22044 0.93712 1.01909 0.88222 1.16832 0.81995 0.78839 0.84178 1.90860 1.46574 1.63154 1.38814 1.22521 0.91760 1.05170 0.96656 1.23811 0.99257 0.94072 0.93095 1.72275 1.28652 1.26958 1.13763 1.79203 0.92707 1.30524 1.22790 1.72963 1.36224 1.20741 1.08933 1.21864 1.00595 0.94133 0.91970 1.19761 0.85358 0.86690 0.85186 1.90479 1.43844 1.80168 1.31659 1.41865 1.49492 1.07347 1.21517 1.19648 1.32895 0.82340 1.07924 0.87999 1.25251 0.96866 1.00527 0.95329 1.69606 1.38065 1.35803 1.10947 0.85921 0.78881 0.81758 0.77666 1.19959 1.21013 1.19924 0.96767 0.88754 0.92106 0.94948 0.90867 0.90741 0.91075 0.89609 0.89802 0.92091 0.89776 0.90805 0.76892 0.93502 0.89454 0.77503 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.96 60.06 0.54 0.91 16 2 N -0.52 -8.88 4.50 -244.37 -1.10 -9.98 16 3 C 0.06 0.74 4.96 -3.82 -0.02 0.72 16 4 C -0.13 -1.49 5.46 -26.73 -0.15 -1.64 16 5 C 0.12 1.08 5.34 -4.04 -0.02 1.06 16 6 N -0.59 -5.54 2.87 -182.72 -0.53 -6.07 16 7 C 0.08 0.60 9.23 59.85 0.55 1.15 16 8 C 0.60 6.45 7.66 -12.38 -0.09 6.36 16 9 O -0.52 -6.95 16.45 5.30 0.09 -6.87 16 10 C 0.01 0.12 6.51 -83.71 -0.55 -0.42 16 11 C 0.09 0.74 11.23 -17.87 -0.20 0.54 16 12 N -0.58 -4.56 11.41 19.43 0.22 -4.34 16 13 S 0.71 3.90 23.69 -107.50 -2.55 1.35 16 14 N -0.54 -4.03 7.94 23.18 0.18 -3.84 16 15 C 0.05 0.83 5.45 -4.97 -0.03 0.81 16 16 C 0.44 10.64 7.47 -10.98 -0.08 10.56 16 17 O -0.58 -15.75 13.91 5.55 0.08 -15.67 16 18 N -0.57 -14.47 5.29 -10.96 -0.06 -14.53 16 19 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.69 13.05 55.50 0.72 -23.96 16 23 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 27 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.09 1.95 5.82 -51.93 -0.30 1.65 16 29 H 0.06 0.96 6.47 -51.93 -0.34 0.62 16 30 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 31 H 0.07 0.82 7.93 -51.93 -0.41 0.41 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.94 6.55 -51.93 -0.34 0.60 16 34 H 0.09 0.85 7.50 -51.93 -0.39 0.46 16 35 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 36 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 37 H 0.08 0.62 5.90 -51.93 -0.31 0.32 16 38 H 0.07 0.45 8.03 -51.93 -0.42 0.04 16 39 H 0.21 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 41 H 0.09 1.42 7.93 -51.93 -0.41 1.01 16 42 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 43 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 373.69 15.07 5.63 5.63 Total: -1.00 -33.89 373.69 -8.31 -42.20 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.70 Total: 7.89 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: -0.29 Total: 12.00 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: -0.55 Total: -62.72 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: 0.16 Total: -22.54 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -2.55 Total: 1.35 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.89 -8.31 -42.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724843151.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.170 kcal (2) G-P(sol) polarization free energy of solvation -33.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds