Wall clock time and date at job start Sat Apr 11 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47290 * 2 1 4 4 C 1.52999 * 109.47117 * 240.00512 * 2 1 3 5 5 N 1.46506 * 109.47441 * 184.99692 * 4 2 1 6 6 C 1.34770 * 120.00343 * 179.97438 * 5 4 2 7 7 O 1.21620 * 119.99711 * 4.85106 * 6 5 4 8 8 C 1.47232 * 120.00204 * 185.12970 * 6 5 4 9 9 C 1.37009 * 127.18944 * 354.10747 * 8 6 5 10 10 N 1.33320 * 106.37313 * 180.02562 * 9 8 6 11 11 N 1.28512 * 109.43940 * 0.02562 * 10 9 8 12 12 N 1.28718 * 110.63911 * 359.71137 * 11 10 9 13 13 C 1.46501 * 126.03789 * 180.31216 * 12 11 10 14 14 N 1.46495 * 109.47537 * 120.00332 * 2 1 3 15 15 C 1.46501 * 120.00109 * 59.99875 * 14 2 1 16 16 C 1.34779 * 120.00059 * 240.00023 * 14 2 1 17 17 O 1.21279 * 119.99954 * 359.97438 * 16 14 2 18 18 C 1.50700 * 119.99704 * 179.97438 * 16 14 2 19 19 S 1.81008 * 109.46863 * 180.02562 * 18 16 14 20 20 C 1.76198 * 99.99798 * 180.02562 * 19 18 16 21 21 H 1.07994 * 120.00156 * 0.02562 * 20 19 18 22 22 C 1.38806 * 119.99686 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99592 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00120 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46711 * 90.00208 * 24 22 20 26 26 H 1.48500 * 109.47103 * 210.00238 * 24 22 20 27 27 H 1.48499 * 109.46924 * 330.00764 * 24 22 20 28 28 H 1.08996 * 109.47296 * 59.99643 * 1 2 3 29 29 H 1.08997 * 109.46872 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47002 * 299.99523 * 1 2 3 31 31 H 1.09005 * 109.47634 * 64.99681 * 4 2 1 32 32 H 1.09004 * 109.47378 * 304.99705 * 4 2 1 33 33 H 0.96999 * 119.99361 * 0.02562 * 5 4 2 34 34 H 1.08006 * 126.80958 * 0.02562 * 9 8 6 35 35 H 1.08995 * 109.46913 * 274.25722 * 13 12 11 36 36 H 1.09004 * 109.46778 * 34.25773 * 13 12 11 37 37 H 1.08994 * 109.46967 * 154.25039 * 13 12 11 38 38 H 1.09001 * 109.46869 * 90.00234 * 15 14 2 39 39 H 1.08998 * 109.47364 * 210.00433 * 15 14 2 40 40 H 1.08998 * 109.46850 * 330.00699 * 15 14 2 41 41 H 1.08995 * 109.47257 * 299.99862 * 18 16 14 42 42 H 1.09002 * 109.47261 * 60.00398 * 18 16 14 43 43 H 0.97001 * 119.99191 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 3.5001 -0.8262 -1.1907 6 6 4.1730 -1.4289 -2.1909 7 8 3.5787 -1.8068 -3.1824 8 6 5.6266 -1.6354 -2.0805 9 6 6.4549 -1.1792 -1.0890 10 7 7.6806 -1.6020 -1.3993 11 7 7.6377 -2.2706 -2.4959 12 7 6.4329 -2.3279 -2.9455 13 6 6.0005 -3.0104 -4.1675 14 7 2.0184 -0.6906 1.1961 15 6 1.6645 -2.0932 1.4279 16 6 2.7933 -0.0357 2.0832 17 8 3.0866 1.1253 1.8911 18 6 3.2952 -0.7460 3.3139 19 16 4.3003 0.3918 4.2995 20 6 4.7432 -0.6693 5.6346 21 1 4.3933 -1.6908 5.6514 22 6 5.5417 -0.1921 6.6648 23 7 5.8729 -0.9849 7.6620 24 14 6.1474 1.5748 6.6354 25 1 5.1642 2.4466 7.3272 26 1 7.4582 1.6603 7.3280 27 1 6.3011 2.0219 5.2277 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.7516 -0.1582 -2.1371 32 1 1.6054 -1.7197 -1.2953 33 1 3.9823 -0.4627 -0.4317 34 1 6.1711 -0.5934 -0.2272 35 1 6.1244 -2.3425 -5.0199 36 1 6.6042 -3.9057 -4.3166 37 1 4.9514 -3.2910 -4.0751 38 1 2.4159 -2.7377 0.9715 39 1 1.6239 -2.2853 2.5000 40 1 0.6905 -2.3002 0.9845 41 1 2.4473 -1.0882 3.9071 42 1 3.9006 -1.6026 3.0175 43 1 6.4313 -0.6515 8.3817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725976812.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:38 Heat of formation + Delta-G solvation = 35.388321 kcal Electronic energy + Delta-G solvation = -27539.895482 eV Core-core repulsion = 23556.421298 eV Total energy + Delta-G solvation = -3983.474184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -43.53643 -40.41597 -39.47577 -36.79762 -35.13126 -34.41589 -32.61044 -32.46766 -31.44382 -28.98573 -28.39295 -27.13272 -26.85753 -25.65177 -23.96838 -22.61862 -21.86576 -20.85501 -19.43406 -18.40258 -17.81743 -17.22053 -17.05355 -17.01580 -16.52768 -15.78490 -15.71164 -15.25645 -14.99168 -14.82344 -14.49054 -14.14150 -13.66312 -13.61225 -13.42659 -13.40418 -13.27165 -13.11691 -12.82403 -12.54311 -12.49227 -12.32175 -12.21549 -12.04896 -11.36199 -11.30387 -11.28333 -11.03638 -10.64491 -10.55468 -10.45807 -9.89935 -9.84066 -9.66378 -9.46632 -9.03655 -8.85342 -8.55611 -6.97518 -6.31968 -4.04818 0.62488 1.77161 2.06955 2.53310 2.71409 2.72066 2.75590 3.09043 3.30709 3.47553 3.53615 4.00334 4.15054 4.25069 4.30135 4.46251 4.55183 4.68399 4.69774 4.74345 4.87101 4.88722 5.02685 5.07252 5.08643 5.15054 5.22172 5.28359 5.30995 5.36001 5.55363 5.66658 5.69770 5.71414 5.80478 5.91956 5.93757 6.07342 6.37488 6.94126 7.21779 7.60398 7.90894 8.10315 8.22727 8.38354 9.14066 10.77265 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010192 B = 0.003453 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.608451 B = 8106.882148 C =10097.947061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.122 3.878 3 H 0.112 0.888 4 C 0.114 3.886 5 N -0.705 5.705 6 C 0.601 3.399 7 O -0.541 6.541 8 C -0.079 4.079 9 C 0.013 3.987 10 N -0.267 5.267 11 N -0.058 5.058 12 N -0.257 5.257 13 C 0.077 3.923 14 N -0.619 5.619 15 C 0.075 3.925 16 C 0.530 3.470 17 O -0.516 6.516 18 C -0.123 4.123 19 S -0.140 6.140 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.097 3.903 23 N -0.879 5.879 24 Si 0.856 3.144 25 H -0.268 1.268 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.409 0.591 34 H 0.201 0.799 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.687 -3.695 -22.479 24.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.018 3.982 3 H 0.130 0.870 4 C -0.010 4.010 5 N -0.357 5.357 6 C 0.385 3.615 7 O -0.418 6.418 8 C -0.213 4.213 9 C -0.148 4.148 10 N -0.129 5.129 11 N -0.039 5.039 12 N -0.054 5.054 13 C -0.064 4.064 14 N -0.356 5.356 15 C -0.068 4.068 16 C 0.318 3.682 17 O -0.390 6.390 18 C -0.274 4.274 19 S 0.086 5.914 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.112 4.112 23 N -0.515 5.515 24 Si 0.681 3.319 25 H -0.193 1.193 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.246 0.754 34 H 0.217 0.783 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.133 0.867 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.140 -2.735 -23.552 25.068 hybrid contribution -0.904 -0.442 1.018 1.432 sum -9.044 -3.176 -22.533 24.488 Atomic orbital electron populations 1.22053 0.93447 1.02824 1.03305 1.21317 0.95131 0.98605 0.83121 0.87016 1.21863 0.78715 1.01902 0.98546 1.45590 1.08203 1.58683 1.23238 1.16607 0.83668 0.78081 0.83124 1.90786 1.69389 1.51530 1.30135 1.21857 0.94874 1.07903 0.96640 1.24058 0.88928 1.01916 0.99922 1.74974 1.21291 1.10469 1.06164 1.78312 1.00984 1.16958 1.07682 1.47647 1.05328 1.33442 1.18934 1.22540 1.03782 0.98134 0.81927 1.47957 1.52106 1.12796 1.22729 1.21814 1.00825 0.81140 1.03018 1.20439 0.77217 0.86779 0.83722 1.90712 1.56419 1.16278 1.75578 1.23332 1.03812 1.03507 0.96705 1.84790 1.62803 1.18950 1.24871 1.22283 1.37773 1.00235 1.06703 0.89407 1.24712 0.94396 0.98111 0.94012 1.69936 1.35598 1.36043 1.09968 0.86745 0.79194 0.84622 0.81335 1.19260 1.19898 1.15871 0.91014 0.91853 0.91199 0.89776 0.90608 0.75429 0.78258 0.88667 0.88002 0.86653 0.92618 0.90272 0.90938 0.88447 0.88427 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.17 37.16 0.34 -0.68 16 2 C 0.12 1.04 2.80 -67.94 -0.19 0.85 16 3 H 0.11 1.16 6.90 -51.92 -0.36 0.81 16 4 C 0.11 0.89 4.97 -4.04 -0.02 0.87 16 5 N -0.71 -6.64 5.38 -61.44 -0.33 -6.97 16 6 C 0.60 6.47 7.79 -12.61 -0.10 6.38 16 7 O -0.54 -6.54 14.85 5.26 0.08 -6.46 16 8 C -0.08 -0.90 6.98 -82.33 -0.57 -1.48 16 9 C 0.01 0.16 11.55 -17.35 -0.20 -0.04 16 10 N -0.27 -3.91 12.35 30.48 0.38 -3.54 16 11 N -0.06 -0.79 13.14 60.35 0.79 0.01 16 12 N -0.26 -2.85 3.79 -64.12 -0.24 -3.10 16 13 C 0.08 0.53 10.98 59.85 0.66 1.19 16 14 N -0.62 -6.42 2.24 -173.94 -0.39 -6.81 16 15 C 0.08 0.60 9.40 59.85 0.56 1.16 16 16 C 0.53 7.98 7.40 -10.98 -0.08 7.90 16 17 O -0.52 -9.43 15.19 5.56 0.08 -9.35 16 18 C -0.12 -2.14 4.71 36.01 0.17 -1.97 16 19 S -0.14 -3.34 18.55 -107.50 -1.99 -5.33 16 20 C -0.52 -14.52 10.04 30.94 0.31 -14.21 16 21 H 0.09 2.55 8.03 -52.49 -0.42 2.13 16 22 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 23 N -0.88 -26.09 13.97 55.49 0.78 -25.32 16 24 Si 0.86 21.29 27.74 -169.99 -4.71 16.57 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.23 -5.78 6.74 56.52 0.38 -5.40 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.34 6.66 -51.93 -0.35 -0.01 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.55 7.84 -51.93 -0.41 0.14 16 33 H 0.41 4.08 6.90 -40.82 -0.28 3.80 16 34 H 0.20 2.09 7.56 -52.48 -0.40 1.69 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.12 0.81 6.36 -51.93 -0.33 0.48 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.67 6.44 -51.93 -0.33 0.34 16 40 H 0.07 0.42 6.43 -51.93 -0.33 0.09 16 41 H 0.10 1.60 7.40 -51.92 -0.38 1.22 16 42 H 0.10 1.59 8.11 -51.92 -0.42 1.17 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 375.24 15.07 5.65 5.65 Total: -1.00 -35.51 375.24 -4.84 -40.34 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.71 Total: 1.66 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 0.78 Total: 2.63 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.98 Total: -45.72 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.16 Total: -15.81 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.71 Total: 16.57 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -1.99 Total: -5.33 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.51 -4.84 -40.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725976812.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.733 kcal (2) G-P(sol) polarization free energy of solvation -35.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds