Wall clock time and date at job start Sat Apr 11 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46841 * 2 1 4 4 C 1.52994 * 109.47027 * 120.00244 * 2 1 3 5 5 N 1.46503 * 109.47157 * 174.99984 * 4 2 1 6 6 C 1.34777 * 120.00032 * 179.97438 * 5 4 2 7 7 O 1.21623 * 120.00040 * 5.10606 * 6 5 4 8 8 C 1.47229 * 120.00012 * 185.09910 * 6 5 4 9 9 C 1.37011 * 127.18970 * 5.02368 * 8 6 5 10 10 N 1.33317 * 106.37527 * 179.97438 * 9 8 6 11 11 N 1.28514 * 109.43518 * 359.76596 * 10 9 8 12 12 N 1.28707 * 110.64163 * 0.39387 * 11 10 9 13 13 C 1.46503 * 126.03783 * 179.88589 * 12 11 10 14 14 N 1.46500 * 109.46977 * 239.99998 * 2 1 3 15 15 C 1.46497 * 120.00116 * 300.00264 * 14 2 1 16 16 C 1.34782 * 119.99652 * 119.99995 * 14 2 1 17 17 O 1.21279 * 119.99889 * 359.97438 * 16 14 2 18 18 C 1.50696 * 119.99630 * 179.97438 * 16 14 2 19 19 S 1.80998 * 109.47139 * 179.97438 * 18 16 14 20 20 C 1.76202 * 100.00189 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00115 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99849 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00055 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00277 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47103 * 90.00138 * 24 22 20 26 26 H 1.48501 * 109.47384 * 210.00407 * 24 22 20 27 27 H 1.48506 * 109.47043 * 330.00487 * 24 22 20 28 28 H 1.09002 * 109.47542 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47382 * 299.99729 * 1 2 3 30 30 H 1.09005 * 109.47578 * 60.00170 * 1 2 3 31 31 H 1.09002 * 109.47586 * 54.99650 * 4 2 1 32 32 H 1.09007 * 109.47363 * 294.99493 * 4 2 1 33 33 H 0.96998 * 120.00116 * 359.97438 * 5 4 2 34 34 H 1.08001 * 126.80969 * 359.97438 * 9 8 6 35 35 H 1.09003 * 109.46915 * 264.23897 * 13 12 11 36 36 H 1.09001 * 109.47418 * 24.23604 * 13 12 11 37 37 H 1.09000 * 109.47508 * 144.24262 * 13 12 11 38 38 H 1.09000 * 109.47578 * 90.00033 * 15 14 2 39 39 H 1.08998 * 109.46889 * 210.00447 * 15 14 2 40 40 H 1.09002 * 109.47017 * 329.99875 * 15 14 2 41 41 H 1.09001 * 109.47594 * 300.00499 * 18 16 14 42 42 H 1.09004 * 109.46958 * 60.00210 * 18 16 14 43 43 H 0.96998 * 120.00307 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1730 -1.4284 2.1911 7 8 3.5642 -1.9658 3.0965 8 6 5.6453 -1.4355 2.1881 9 6 6.4748 -0.7997 1.3021 10 7 7.7203 -1.0830 1.6837 11 7 7.6879 -1.8315 2.7278 12 7 6.4724 -2.0788 3.0713 13 6 6.0479 -2.8979 4.2093 14 7 2.0183 -0.6906 -1.1962 15 6 1.6643 -2.0931 -1.4281 16 6 2.7932 -0.0355 -2.0834 17 8 3.0857 1.1257 -1.8916 18 6 3.2959 -0.7461 -3.3135 19 16 4.3007 0.3918 -4.2992 20 6 4.7434 -0.6691 -5.6346 21 1 4.3930 -1.6905 -5.6518 22 6 5.5425 -0.1921 -6.6643 23 7 5.8729 -0.9845 -7.6621 24 14 6.1481 1.5747 -6.6349 25 1 7.4518 1.6394 -5.9268 26 1 6.3161 2.0637 -8.0270 27 1 5.1579 2.4257 -5.9274 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6053 -1.7198 1.2951 32 1 1.7517 -0.1583 2.1370 33 1 3.9824 -0.4628 0.4316 34 1 6.1783 -0.1901 0.4613 35 1 5.8440 -3.9135 3.8699 36 1 6.8395 -2.9173 4.9584 37 1 5.1445 -2.4726 4.6463 38 1 0.7375 -2.1444 -1.9994 39 1 2.4628 -2.5818 -1.9863 40 1 1.5294 -2.5968 -0.4709 41 1 3.9016 -1.6023 -3.0166 42 1 2.4483 -1.0890 -3.9069 43 1 6.4310 -0.6511 -8.3819 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725976813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:43 Heat of formation + Delta-G solvation = 35.076891 kcal Electronic energy + Delta-G solvation = -27502.667701 eV Core-core repulsion = 23519.180012 eV Total energy + Delta-G solvation = -3983.487688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.54553 -40.41957 -39.46979 -36.79713 -35.13168 -34.41753 -32.60713 -32.47049 -31.45002 -28.98735 -28.40016 -27.06295 -26.91849 -25.65461 -23.97609 -22.62838 -21.86738 -20.85513 -19.43419 -18.40221 -17.82214 -17.22624 -17.05900 -17.02059 -16.52343 -15.85202 -15.68139 -15.27877 -15.00572 -14.76867 -14.41679 -14.17174 -13.65740 -13.63859 -13.43813 -13.36236 -13.27410 -13.07040 -12.83142 -12.62348 -12.42594 -12.32349 -12.28239 -12.02247 -11.37887 -11.32149 -11.29554 -11.03473 -10.64797 -10.56583 -10.45533 -9.90118 -9.84424 -9.65611 -9.47627 -9.03760 -8.84795 -8.55717 -6.97609 -6.32142 -4.05054 0.61754 1.76849 2.06013 2.53298 2.71720 2.72343 2.74307 3.08935 3.31481 3.47222 3.53314 4.00329 4.14523 4.25473 4.30022 4.44535 4.54474 4.68548 4.69455 4.73708 4.85488 4.90951 5.02352 5.06529 5.07308 5.14406 5.24855 5.28365 5.33481 5.34004 5.56434 5.66050 5.69740 5.72791 5.79575 5.91995 5.93348 6.06502 6.37405 6.93920 7.21935 7.60202 7.90625 8.09331 8.22822 8.38026 9.13838 10.77069 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010146 B = 0.003417 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.163428 B = 8191.550717 C =10159.587738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.123 3.877 3 H 0.112 0.888 4 C 0.113 3.887 5 N -0.706 5.706 6 C 0.601 3.399 7 O -0.541 6.541 8 C -0.079 4.079 9 C 0.013 3.987 10 N -0.268 5.268 11 N -0.058 5.058 12 N -0.256 5.256 13 C 0.078 3.922 14 N -0.619 5.619 15 C 0.076 3.924 16 C 0.530 3.470 17 O -0.516 6.516 18 C -0.123 4.123 19 S -0.140 6.140 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.097 3.903 23 N -0.879 5.879 24 Si 0.856 3.144 25 H -0.266 1.266 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.410 0.590 34 H 0.201 0.799 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.580 -3.475 22.624 24.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.018 3.982 3 H 0.130 0.870 4 C -0.012 4.012 5 N -0.357 5.357 6 C 0.385 3.615 7 O -0.418 6.418 8 C -0.213 4.213 9 C -0.148 4.148 10 N -0.130 5.130 11 N -0.039 5.039 12 N -0.053 5.053 13 C -0.062 4.062 14 N -0.356 5.356 15 C -0.067 4.067 16 C 0.319 3.681 17 O -0.390 6.390 18 C -0.274 4.274 19 S 0.086 5.914 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.112 4.112 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.191 1.191 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.246 0.754 34 H 0.218 0.782 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.131 0.869 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.024 -2.425 23.738 25.174 hybrid contribution -0.897 -0.640 -1.102 1.559 sum -8.921 -3.065 22.636 24.522 Atomic orbital electron populations 1.22041 0.93396 1.02858 1.03218 1.21317 0.95180 0.98590 0.83067 0.87018 1.21866 0.78786 1.01985 0.98520 1.45591 1.08180 1.59021 1.22952 1.16607 0.83885 0.78584 0.82405 1.90792 1.69323 1.45348 1.36355 1.21856 0.94190 1.07060 0.98175 1.24057 0.88593 1.01483 1.00675 1.74968 1.21153 1.11095 1.05786 1.78311 1.00973 1.13930 1.10697 1.47643 1.04325 1.32198 1.21168 1.22519 1.03375 0.95100 0.85255 1.47955 1.52103 1.12778 1.22741 1.21804 1.01616 0.81226 1.02082 1.20433 0.77208 0.86822 0.83681 1.90711 1.56473 1.16265 1.75550 1.23329 1.03910 1.03406 0.96707 1.84785 1.63619 1.18618 1.24377 1.22284 1.37596 1.00164 1.06956 0.89417 1.24710 0.94403 0.98119 0.94003 1.69932 1.35556 1.36050 1.10031 0.86748 0.81441 0.85067 0.78670 1.19097 1.19947 1.15930 0.91900 0.91088 0.91252 0.90445 0.89832 0.75415 0.78246 0.88672 0.87829 0.86872 0.92272 0.90409 0.91187 0.88490 0.88418 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.19 37.16 0.34 -0.69 16 2 C 0.12 1.05 2.80 -67.93 -0.19 0.86 16 3 H 0.11 1.16 6.90 -51.93 -0.36 0.80 16 4 C 0.11 0.87 4.92 -4.04 -0.02 0.85 16 5 N -0.71 -6.58 5.37 -61.44 -0.33 -6.91 16 6 C 0.60 6.43 7.80 -12.61 -0.10 6.33 16 7 O -0.54 -6.49 14.97 5.26 0.08 -6.42 16 8 C -0.08 -0.90 6.98 -82.33 -0.57 -1.47 16 9 C 0.01 0.16 11.54 -17.35 -0.20 -0.04 16 10 N -0.27 -3.88 12.35 30.47 0.38 -3.51 16 11 N -0.06 -0.77 13.14 60.35 0.79 0.02 16 12 N -0.26 -2.83 3.79 -64.11 -0.24 -3.07 16 13 C 0.08 0.53 10.83 59.85 0.65 1.18 16 14 N -0.62 -6.47 2.24 -173.94 -0.39 -6.86 16 15 C 0.08 0.62 9.30 59.85 0.56 1.17 16 16 C 0.53 8.02 7.40 -10.99 -0.08 7.94 16 17 O -0.52 -9.43 15.19 5.56 0.08 -9.35 16 18 C -0.12 -2.15 4.71 36.00 0.17 -1.98 16 19 S -0.14 -3.34 18.55 -107.50 -1.99 -5.34 16 20 C -0.52 -14.54 10.04 30.94 0.31 -14.23 16 21 H 0.09 2.55 8.03 -52.49 -0.42 2.13 16 22 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 23 N -0.88 -26.11 13.97 55.49 0.78 -25.34 16 24 Si 0.86 21.29 27.74 -169.99 -4.71 16.57 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 27 H -0.24 -5.80 6.74 56.52 0.38 -5.42 16 28 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.57 6.88 -51.93 -0.36 0.21 16 32 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.41 4.04 6.94 -40.82 -0.28 3.76 16 34 H 0.20 2.04 7.59 -52.49 -0.40 1.64 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.11 0.77 6.67 -51.93 -0.35 0.42 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.68 6.44 -51.93 -0.33 0.35 16 40 H 0.07 0.45 6.53 -51.93 -0.34 0.11 16 41 H 0.10 1.58 7.40 -51.92 -0.38 1.19 16 42 H 0.10 1.63 8.11 -51.91 -0.42 1.21 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -35.51 375.58 -4.87 -40.38 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.73 Total: 1.58 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 0.77 Total: 2.58 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.98 Total: -45.67 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: 0.16 Total: -15.77 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.71 Total: 16.57 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -1.99 Total: -5.34 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.51 -4.87 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725976813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.457 kcal (2) G-P(sol) polarization free energy of solvation -35.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds