Wall clock time and date at job start Sat Apr 11 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46841 * 2 1 4 4 C 1.52994 * 109.47027 * 120.00244 * 2 1 3 5 5 N 1.46503 * 109.47157 * 174.99984 * 4 2 1 6 6 C 1.34777 * 120.00032 * 179.97438 * 5 4 2 7 7 O 1.21623 * 120.00040 * 5.10606 * 6 5 4 8 8 C 1.47229 * 120.00012 * 185.09910 * 6 5 4 9 9 C 1.37011 * 127.18970 * 5.02368 * 8 6 5 10 10 N 1.33317 * 106.37527 * 179.97438 * 9 8 6 11 11 N 1.28514 * 109.43518 * 359.76596 * 10 9 8 12 12 N 1.28707 * 110.64163 * 0.39387 * 11 10 9 13 13 C 1.46503 * 126.03783 * 179.88589 * 12 11 10 14 14 N 1.46500 * 109.46977 * 239.99998 * 2 1 3 15 15 C 1.46497 * 120.00116 * 300.00264 * 14 2 1 16 16 C 1.34782 * 119.99652 * 119.99995 * 14 2 1 17 17 O 1.21279 * 119.99889 * 359.97438 * 16 14 2 18 18 C 1.50696 * 119.99630 * 179.97438 * 16 14 2 19 19 S 1.80998 * 109.47139 * 179.97438 * 18 16 14 20 20 C 1.76202 * 100.00189 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00115 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99849 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00055 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00277 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47103 * 90.00138 * 24 22 20 26 26 H 1.48501 * 109.47384 * 210.00407 * 24 22 20 27 27 H 1.48506 * 109.47043 * 330.00487 * 24 22 20 28 28 H 1.09002 * 109.47542 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47382 * 299.99729 * 1 2 3 30 30 H 1.09005 * 109.47578 * 60.00170 * 1 2 3 31 31 H 1.09002 * 109.47586 * 54.99650 * 4 2 1 32 32 H 1.09007 * 109.47363 * 294.99493 * 4 2 1 33 33 H 0.96998 * 120.00116 * 359.97438 * 5 4 2 34 34 H 1.08001 * 126.80969 * 359.97438 * 9 8 6 35 35 H 1.09003 * 109.46915 * 264.23897 * 13 12 11 36 36 H 1.09001 * 109.47418 * 24.23604 * 13 12 11 37 37 H 1.09000 * 109.47508 * 144.24262 * 13 12 11 38 38 H 1.09000 * 109.47578 * 90.00033 * 15 14 2 39 39 H 1.08998 * 109.46889 * 210.00447 * 15 14 2 40 40 H 1.09002 * 109.47017 * 329.99875 * 15 14 2 41 41 H 1.09001 * 109.47594 * 300.00499 * 18 16 14 42 42 H 1.09004 * 109.46958 * 60.00210 * 18 16 14 43 43 H 0.96998 * 120.00307 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1730 -1.4284 2.1911 7 8 3.5642 -1.9658 3.0965 8 6 5.6453 -1.4355 2.1881 9 6 6.4748 -0.7997 1.3021 10 7 7.7203 -1.0830 1.6837 11 7 7.6879 -1.8315 2.7278 12 7 6.4724 -2.0788 3.0713 13 6 6.0479 -2.8979 4.2093 14 7 2.0183 -0.6906 -1.1962 15 6 1.6643 -2.0931 -1.4281 16 6 2.7932 -0.0355 -2.0834 17 8 3.0857 1.1257 -1.8916 18 6 3.2959 -0.7461 -3.3135 19 16 4.3007 0.3918 -4.2992 20 6 4.7434 -0.6691 -5.6346 21 1 4.3930 -1.6905 -5.6518 22 6 5.5425 -0.1921 -6.6643 23 7 5.8729 -0.9845 -7.6621 24 14 6.1481 1.5747 -6.6349 25 1 7.4518 1.6394 -5.9268 26 1 6.3161 2.0637 -8.0270 27 1 5.1579 2.4257 -5.9274 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6053 -1.7198 1.2951 32 1 1.7517 -0.1583 2.1370 33 1 3.9824 -0.4628 0.4316 34 1 6.1783 -0.1901 0.4613 35 1 5.8440 -3.9135 3.8699 36 1 6.8395 -2.9173 4.9584 37 1 5.1445 -2.4726 4.6463 38 1 0.7375 -2.1444 -1.9994 39 1 2.4628 -2.5818 -1.9863 40 1 1.5294 -2.5968 -0.4709 41 1 3.9016 -1.6023 -3.0166 42 1 2.4483 -1.0890 -3.9069 43 1 6.4310 -0.6511 -8.3819 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725976813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:41 Heat of formation + Delta-G solvation = 8.488507 kcal Electronic energy + Delta-G solvation = -27503.820660 eV Core-core repulsion = 23519.180012 eV Total energy + Delta-G solvation = -3984.640647 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -44.45191 -41.35781 -40.43156 -37.75763 -35.97412 -35.27597 -34.65141 -33.48072 -32.33198 -30.23657 -29.10922 -27.85682 -27.80825 -27.59548 -24.82265 -23.50880 -22.76804 -21.68590 -20.48045 -19.62572 -19.19961 -18.35611 -17.94583 -17.86288 -17.39648 -17.09406 -16.83948 -16.68057 -16.24904 -15.78755 -15.57548 -15.25038 -14.93202 -14.56959 -14.53221 -14.30047 -14.06069 -13.89815 -13.82932 -13.49922 -13.37181 -13.27884 -13.22664 -13.04937 -12.99451 -12.81277 -12.57135 -12.26904 -11.94927 -11.84158 -11.43448 -11.30573 -11.15178 -10.90122 -10.74512 -10.49068 -10.25045 -9.75476 -8.95990 -8.49787 -6.19589 -0.25534 0.99702 1.01910 1.10644 1.33756 1.47373 1.52482 1.55725 1.86664 1.93281 2.11398 2.26297 2.70992 2.89147 3.17794 3.34705 3.51328 3.63855 3.73221 3.91910 4.07553 4.14707 4.19988 4.26007 4.27141 4.47912 4.50766 4.55759 4.59472 4.66695 4.73631 4.79887 4.83123 4.96462 5.07108 5.13157 5.26022 5.34085 5.55983 5.72292 6.12696 6.13543 6.21209 6.78304 6.95893 7.08772 7.15798 8.62650 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010146 B = 0.003417 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.163428 B = 8191.550717 C =10159.587738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.125 3.875 3 H 0.094 0.906 4 C 0.116 3.884 5 N -0.701 5.701 6 C 0.606 3.394 7 O -0.552 6.552 8 C -0.079 4.079 9 C 0.006 3.994 10 N -0.304 5.304 11 N -0.076 5.076 12 N -0.249 5.249 13 C 0.069 3.931 14 N -0.603 5.603 15 C 0.068 3.932 16 C 0.536 3.464 17 O -0.553 6.553 18 C -0.110 4.110 19 S -0.169 6.169 20 C -0.528 4.528 21 H 0.061 0.939 22 C 0.045 3.955 23 N -0.919 5.919 24 Si 0.913 3.087 25 H -0.263 1.263 26 H -0.263 1.263 27 H -0.233 1.233 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.407 0.593 34 H 0.212 0.788 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.401 -3.700 24.658 27.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.022 3.978 3 H 0.112 0.888 4 C -0.008 4.008 5 N -0.352 5.352 6 C 0.390 3.610 7 O -0.430 6.430 8 C -0.214 4.214 9 C -0.156 4.156 10 N -0.166 5.166 11 N -0.057 5.057 12 N -0.047 5.047 13 C -0.070 4.070 14 N -0.337 5.337 15 C -0.074 4.074 16 C 0.323 3.677 17 O -0.430 6.430 18 C -0.260 4.260 19 S 0.057 5.943 20 C -0.675 4.675 21 H 0.079 0.921 22 C -0.160 4.160 23 N -0.557 5.557 24 Si 0.735 3.265 25 H -0.188 1.188 26 H -0.187 1.187 27 H -0.157 1.157 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.243 0.757 34 H 0.228 0.772 35 H 0.129 0.871 36 H 0.143 0.857 37 H 0.134 0.866 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.879 -2.688 25.803 27.760 hybrid contribution -0.484 -0.717 -1.596 1.815 sum -10.362 -3.405 24.208 26.552 Atomic orbital electron populations 1.22014 0.91292 1.04066 1.03543 1.21452 0.96624 0.97515 0.82258 0.88823 1.21982 0.77646 1.02799 0.98332 1.45646 1.08901 1.58289 1.22372 1.16462 0.83397 0.78625 0.82483 1.90789 1.69331 1.46082 1.36828 1.22030 0.94649 1.06773 0.97967 1.24303 0.88182 1.01811 1.01291 1.74914 1.22546 1.12332 1.06808 1.78234 1.02051 1.14527 1.10880 1.47999 1.03714 1.31533 1.21431 1.22878 1.04254 0.95201 0.84631 1.47892 1.50150 1.13579 1.22092 1.22055 1.02040 0.79557 1.03793 1.19936 0.77916 0.86227 0.83627 1.90705 1.58317 1.17667 1.76359 1.23308 1.03287 1.02300 0.97142 1.84652 1.65327 1.20263 1.24014 1.22474 1.36992 0.99722 1.08360 0.92109 1.25562 0.94747 1.01885 0.93813 1.70018 1.36746 1.37973 1.10978 0.85886 0.80871 0.80581 0.79170 1.18792 1.18703 1.15675 0.90221 0.89135 0.92620 0.89053 0.88482 0.75692 0.77174 0.87146 0.85675 0.86569 0.90780 0.90972 0.88661 0.87174 0.87423 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.19 71.98 0.66 -0.81 16 2 C 0.12 1.80 2.80 44.99 0.13 1.92 16 3 H 0.09 1.78 6.90 -2.39 -0.02 1.77 16 4 C 0.12 1.41 4.92 86.38 0.43 1.83 16 5 N -0.70 -11.51 5.37 -466.56 -2.50 -14.01 16 6 C 0.61 11.73 7.80 86.61 0.68 12.41 16 7 O -0.55 -11.82 14.97 -4.10 -0.06 -11.89 16 8 C -0.08 -1.72 6.98 40.41 0.28 -1.44 16 9 C 0.01 0.14 11.54 84.18 0.97 1.11 16 10 N -0.30 -8.91 12.35 -57.50 -0.71 -9.62 16 11 N -0.08 -2.01 13.14 37.02 0.49 -1.52 16 12 N -0.25 -5.23 3.79 -356.76 -1.35 -6.58 16 13 C 0.07 0.81 10.83 127.77 1.38 2.20 16 14 N -0.60 -11.14 2.24 -822.61 -1.85 -12.99 16 15 C 0.07 0.88 9.30 127.77 1.19 2.07 16 16 C 0.54 15.49 7.40 87.65 0.65 16.14 16 17 O -0.55 -19.88 15.19 -3.03 -0.05 -19.92 16 18 C -0.11 -3.74 4.71 71.23 0.34 -3.40 16 19 S -0.17 -8.05 18.55 -56.49 -1.05 -9.10 16 20 C -0.53 -29.86 10.04 67.95 0.68 -29.18 16 21 H 0.06 3.64 8.03 -2.91 -0.02 3.62 16 22 C 0.05 2.61 5.50 84.86 0.47 3.08 16 23 N -0.92 -55.53 13.97 21.65 0.30 -55.23 16 24 Si 0.91 44.24 27.74 68.60 1.90 46.15 16 25 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 27 H -0.23 -11.12 6.74 99.48 0.67 -10.45 16 28 H 0.08 0.54 7.67 -2.39 -0.02 0.52 16 29 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.09 0.93 6.88 -2.39 -0.02 0.92 16 32 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.41 7.39 6.94 -92.71 -0.64 6.75 16 34 H 0.21 4.30 7.59 -2.91 -0.02 4.28 16 35 H 0.11 0.99 8.14 -2.39 -0.02 0.98 16 36 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.12 1.35 6.67 -2.39 -0.02 1.33 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 1.07 6.44 -2.39 -0.02 1.05 16 40 H 0.09 0.82 6.53 -2.39 -0.02 0.80 16 41 H 0.11 3.47 7.40 -2.39 -0.02 3.45 16 42 H 0.11 3.47 8.11 -2.39 -0.02 3.45 16 43 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -78.17 375.58 3.34 -74.83 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.37 Total: 13.97 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 7.85 Total: 5.92 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -5.62 Total: -99.96 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.11 Total: -31.81 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.90 Total: 46.15 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.05 Total: -9.10 kcal Total: -78.17 3.34 -74.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725976813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.315 kcal (2) G-P(sol) polarization free energy of solvation -78.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds