Wall clock time and date at job start Sat Apr 11 2020 06:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47231 * 2 1 4 4 C 1.53002 * 109.47244 * 240.00261 * 2 1 3 5 5 N 1.46901 * 109.47459 * 184.99712 * 4 2 1 6 6 C 1.46894 * 111.00151 * 180.02562 * 5 4 2 7 7 C 1.50696 * 109.47385 * 180.02562 * 6 5 4 8 8 O 1.21301 * 119.99878 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00186 * 180.02562 * 7 6 5 10 10 C 1.37101 * 120.00033 * 179.97438 * 9 7 6 11 11 H 1.08008 * 119.99853 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00121 * 180.02562 * 10 9 7 13 13 N 1.31406 * 119.99954 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00097 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47153 * 59.99403 * 14 12 10 16 16 H 1.48497 * 109.47086 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46995 * 299.99412 * 14 12 10 18 18 N 1.46501 * 109.47632 * 120.00367 * 2 1 3 19 19 C 1.34779 * 119.99647 * 275.00354 * 18 2 1 20 20 O 1.21563 * 120.00195 * 359.97438 * 19 18 2 21 21 C 1.47698 * 119.99689 * 179.97438 * 19 18 2 22 22 C 1.39684 * 120.15615 * 359.97438 * 21 19 18 23 23 C 1.37846 * 119.92388 * 179.70072 * 22 21 19 24 24 C 1.38449 * 120.24436 * 0.26605 * 23 22 21 25 25 C 1.38383 * 120.31115 * 0.02562 * 24 23 22 26 26 F 1.35103 * 119.96478 * 180.02562 * 25 24 23 27 27 C 1.38544 * 120.07216 * 359.97438 * 25 24 23 28 28 F 1.35101 * 120.12227 * 180.02562 * 27 25 24 29 29 H 1.08995 * 109.47534 * 59.99825 * 1 2 3 30 30 H 1.09004 * 109.47231 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47134 * 299.99402 * 1 2 3 32 32 H 1.08998 * 109.46884 * 305.00089 * 4 2 1 33 33 H 1.09000 * 109.46994 * 64.99760 * 4 2 1 34 34 H 1.00903 * 110.99555 * 56.04921 * 5 4 2 35 35 H 1.09011 * 109.47047 * 299.99875 * 6 5 4 36 36 H 1.09001 * 109.47563 * 59.99761 * 6 5 4 37 37 H 0.96993 * 119.99956 * 359.97438 * 9 7 6 38 38 H 0.97001 * 119.99943 * 180.02562 * 13 12 10 39 39 H 0.96993 * 120.00406 * 94.99823 * 18 2 1 40 40 H 1.08002 * 120.04009 * 359.97438 * 22 21 19 41 41 H 1.08007 * 119.87918 * 180.27739 * 23 22 21 42 42 H 1.07997 * 119.84476 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1905 6 6 4.0303 -1.5147 -2.3768 7 6 5.5316 -1.6042 -2.2809 8 8 6.1066 -1.1400 -1.3190 9 7 6.2354 -2.1992 -3.2643 10 6 7.6012 -2.2802 -3.1773 11 1 8.1132 -1.8668 -2.3208 12 6 8.3269 -2.8931 -4.1914 13 7 7.7040 -3.3956 -5.2337 14 14 10.1880 -3.0028 -4.0731 15 1 10.5625 -3.7633 -2.8539 16 1 10.7200 -3.6981 -5.2726 17 1 10.7607 -1.6348 -3.9987 18 7 2.0184 -0.6907 1.1961 19 6 2.1471 -0.0183 2.3571 20 8 1.8583 1.1612 2.4117 21 6 2.6390 -0.7148 3.5631 22 6 2.9712 -2.0702 3.5042 23 6 3.4357 -2.7140 4.6312 24 6 3.5692 -2.0233 5.8236 25 6 3.2373 -0.6818 5.8947 26 9 3.3707 -0.0145 7.0618 27 6 2.7691 -0.0219 4.7700 28 9 2.4452 1.2879 4.8381 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.6053 -1.7197 -1.2952 33 1 1.7516 -0.1582 -2.1370 34 1 3.7995 -1.2884 -0.3434 35 1 3.6095 -2.5188 -2.4310 36 1 3.7558 -0.9569 -3.2722 37 1 5.7756 -2.5701 -4.0337 38 1 8.2106 -3.8238 -5.9415 39 1 2.2491 -1.6317 1.1525 40 1 2.8685 -2.6122 2.5757 41 1 3.6967 -3.7610 4.5837 42 1 3.9334 -2.5342 6.7027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732968599.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:53 Heat of formation + Delta-G solvation = -130.791766 kcal Electronic energy + Delta-G solvation = -28766.625152 eV Core-core repulsion = 24189.811721 eV Total energy + Delta-G solvation = -4576.813431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.73192 -48.78189 -40.44741 -38.75544 -38.28411 -36.76137 -34.36425 -33.72451 -32.30280 -31.25644 -30.88883 -30.36044 -27.66078 -25.23256 -24.80099 -23.37609 -23.12802 -21.73721 -20.71086 -19.37214 -18.83154 -17.93911 -17.71669 -17.51981 -16.73534 -16.66541 -16.26890 -16.05087 -15.43935 -15.29312 -15.23982 -15.00222 -14.67060 -14.54656 -14.40808 -14.20832 -13.93357 -13.57143 -13.36863 -13.13662 -12.74048 -12.63870 -12.47643 -12.37519 -12.10599 -11.99383 -11.80663 -11.65480 -11.51041 -11.10560 -11.01670 -10.46968 -10.24840 -10.14204 -9.59732 -9.53681 -9.28022 -9.16667 -8.52472 -8.14865 -8.00216 -6.45400 -3.86383 0.13701 0.49507 2.40694 2.73325 3.17556 3.21708 3.23652 3.28000 3.38532 3.85763 3.96291 3.98217 4.09630 4.20173 4.24657 4.36802 4.59814 4.74357 4.94135 5.10229 5.13041 5.16743 5.22300 5.24204 5.36627 5.44070 5.46418 5.50050 5.55494 5.66953 5.70585 5.87283 5.91254 6.00782 6.20825 6.21953 6.28818 7.08000 7.20128 7.51557 7.52526 7.95775 8.02088 8.57110 9.14073 9.49953 10.01331 10.72192 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011672 B = 0.002449 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.321459 B =11430.747073 C =13094.201551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.101 0.899 4 C 0.050 3.950 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.439 3.561 8 O -0.582 6.582 9 N -0.562 5.562 10 C -0.301 4.301 11 H 0.102 0.898 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.273 1.273 18 N -0.714 5.714 19 C 0.563 3.437 20 O -0.518 6.518 21 C -0.143 4.143 22 C -0.065 4.065 23 C -0.106 4.106 24 C -0.101 4.101 25 C 0.057 3.943 26 F -0.125 7.125 27 C 0.127 3.873 28 F -0.103 7.103 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.090 0.910 34 H 0.347 0.653 35 H 0.044 0.956 36 H 0.088 0.912 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.397 0.603 40 H 0.144 0.856 41 H 0.149 0.851 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.678 -2.346 15.637 22.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.119 0.881 4 C -0.080 4.080 5 N -0.300 5.300 6 C -0.082 4.082 7 C 0.224 3.776 8 O -0.467 6.467 9 N -0.199 5.199 10 C -0.430 4.430 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.198 1.198 18 N -0.367 5.367 19 C 0.349 3.651 20 O -0.394 6.394 21 C -0.147 4.147 22 C -0.084 4.084 23 C -0.125 4.125 24 C -0.120 4.120 25 C 0.037 3.963 26 F -0.104 7.104 27 C 0.106 3.894 28 F -0.081 7.081 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.108 0.892 34 H 0.166 0.834 35 H 0.062 0.938 36 H 0.106 0.894 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.232 0.768 40 H 0.161 0.839 41 H 0.167 0.833 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.320 -0.552 15.902 22.088 hybrid contribution 0.555 -1.407 -0.192 1.525 sum -14.765 -1.959 15.710 21.648 Atomic orbital electron populations 1.22154 0.94769 1.02178 1.02960 1.21109 0.93572 0.98644 0.82630 0.88092 1.22319 0.88843 0.99034 0.97780 1.59995 1.07449 1.57634 1.04948 1.21696 0.95198 0.96934 0.94422 1.19794 0.88055 0.84374 0.85380 1.90538 1.71095 1.51489 1.33538 1.41852 1.07409 1.50846 1.19795 1.19658 0.81516 1.35265 1.06578 0.87969 1.25259 1.00711 0.96723 0.95161 1.69599 1.36843 1.38539 1.09332 0.85918 0.82090 0.78665 0.77564 1.19903 1.20959 1.19837 1.45861 1.67369 1.13849 1.09577 1.17763 0.78110 0.86465 0.82753 1.90857 1.49026 1.14828 1.84647 1.19993 1.06402 0.95107 0.93242 1.21331 0.95353 0.92059 0.99647 1.21063 0.98920 1.01222 0.91253 1.21313 0.98852 0.91430 1.00379 1.17577 1.05721 0.91576 0.81470 1.91558 1.93752 1.80337 1.44718 1.17660 0.99487 0.79572 0.92729 1.91634 1.89234 1.30684 1.96565 0.91151 0.92453 0.91815 0.94880 0.89215 0.83369 0.93830 0.89393 0.77462 0.91785 0.76794 0.83863 0.83319 0.83113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.48 37.15 0.35 -1.05 16 2 C 0.14 1.54 2.88 -67.93 -0.20 1.35 16 3 H 0.10 1.36 7.58 -51.93 -0.39 0.96 16 4 C 0.05 0.53 5.30 -3.82 -0.02 0.51 16 5 N -0.67 -9.97 6.12 -115.06 -0.70 -10.68 16 6 C 0.05 0.82 6.17 -4.98 -0.03 0.79 16 7 C 0.44 10.02 7.82 -10.99 -0.09 9.94 16 8 O -0.58 -15.51 15.78 5.54 0.09 -15.42 16 9 N -0.56 -13.88 5.29 -10.96 -0.06 -13.94 16 10 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 11 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.11 13.05 55.50 0.72 -23.38 16 14 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 15 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 N -0.71 -7.38 4.31 -54.80 -0.24 -7.61 16 19 C 0.56 7.32 7.73 -12.39 -0.10 7.22 16 20 O -0.52 -8.70 15.00 5.31 0.08 -8.62 16 21 C -0.14 -1.58 5.88 -104.92 -0.62 -2.19 16 22 C -0.07 -0.49 9.54 -39.19 -0.37 -0.86 16 23 C -0.11 -0.64 10.03 -39.65 -0.40 -1.04 16 24 C -0.10 -0.70 10.01 -39.45 -0.40 -1.10 16 25 C 0.06 0.58 7.30 -39.42 -0.29 0.29 16 26 F -0.13 -1.39 17.18 2.25 0.04 -1.35 16 27 C 0.13 1.55 7.29 -38.90 -0.28 1.27 16 28 F -0.10 -1.54 15.46 2.25 0.03 -1.51 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.35 5.23 7.28 -39.29 -0.29 4.95 16 35 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 38 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.40 3.08 6.18 -40.82 -0.25 2.83 16 40 H 0.14 0.71 6.40 -52.49 -0.34 0.38 16 41 H 0.15 0.47 8.06 -52.48 -0.42 0.05 16 42 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 371.58 15.07 5.60 5.60 Total: -1.00 -34.80 371.58 -7.03 -41.84 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -4.91 Total: 12.09 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -2.67 Total: 7.25 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.27 Total: -55.61 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: 0.17 Total: -24.04 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.07 Total: -2.86 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.80 -7.03 -41.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732968599.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.954 kcal (2) G-P(sol) polarization free energy of solvation -34.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds