Wall clock time and date at job start Sat Apr 11 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40478 * 126.85996 * 2 1 4 4 H 0.96994 * 126.65124 * 0.02562 * 3 2 1 5 5 C 1.35162 * 106.69889 * 180.14385 * 3 2 1 6 6 C 1.50697 * 125.53562 * 179.89282 * 5 3 2 7 7 N 1.46908 * 109.47072 * 179.71873 * 6 5 3 8 8 C 1.47957 * 110.99871 * 70.63523 * 7 6 5 9 9 C 1.53936 * 86.18075 * 137.58402 * 8 7 6 10 10 C 1.47959 * 111.00037 * 169.99897 * 7 6 5 11 11 H 1.09001 * 113.86037 * 336.74245 * 10 7 6 12 12 C 1.52999 * 113.75946 * 108.09792 * 10 7 6 13 13 N 1.46497 * 109.46992 * 301.06407 * 12 10 7 14 14 C 1.34777 * 119.99525 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 12 17 17 S 1.80997 * 109.47151 * 180.27780 * 16 14 13 18 18 C 1.76196 * 100.00314 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00018 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00626 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00336 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99494 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47141 * 90.00156 * 22 20 18 24 24 H 1.48505 * 109.47177 * 209.99950 * 22 20 18 25 25 H 1.48496 * 109.47259 * 329.99923 * 22 20 18 26 26 N 1.30730 * 108.92346 * 359.62593 * 5 3 2 27 27 C 1.34448 * 109.94402 * 0.24222 * 26 5 3 28 28 O 1.21721 * 125.92468 * 179.97438 * 27 26 5 29 29 H 1.08993 * 109.47324 * 180.29191 * 1 2 3 30 30 H 1.08998 * 109.46583 * 300.29724 * 1 2 3 31 31 H 1.09001 * 109.47302 * 60.28982 * 1 2 3 32 32 H 1.08992 * 109.47606 * 59.72024 * 6 5 3 33 33 H 1.08999 * 109.47377 * 299.71438 * 6 5 3 34 34 H 1.09000 * 113.75936 * 23.27081 * 8 7 6 35 35 H 1.09000 * 113.86233 * 251.91582 * 8 7 6 36 36 H 1.08999 * 113.73962 * 221.91989 * 9 8 7 37 37 H 1.09001 * 113.82524 * 90.64856 * 9 8 7 38 38 H 1.08995 * 109.46838 * 181.06295 * 12 10 7 39 39 H 1.09001 * 109.46617 * 61.06630 * 12 10 7 40 40 H 0.97000 * 120.00580 * 0.02562 * 13 12 10 41 41 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 42 42 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 43 43 H 0.97003 * 119.99714 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3076 1.1240 0.0000 4 1 2.0323 2.0540 0.0003 5 6 3.5764 0.6581 -0.0033 6 6 4.8213 1.5074 -0.0068 7 7 6.0064 0.6392 -0.0029 8 6 6.1636 -0.0492 -1.3031 9 6 7.6639 0.2702 -1.1741 10 6 7.2381 1.4222 -0.2460 11 1 7.0661 2.3645 -0.7662 12 6 8.1246 1.5768 0.9914 13 7 7.3663 2.2391 2.0556 14 6 7.9483 2.4818 3.2467 15 8 9.0999 2.1524 3.4375 16 6 7.1703 3.1687 4.3394 17 16 8.2209 3.3569 5.8012 18 6 7.0925 4.1645 6.8871 19 1 6.0897 4.3885 6.5547 20 6 7.4920 4.5119 8.1702 21 7 6.6489 5.1147 8.9815 22 14 9.2264 4.1238 8.7455 23 1 10.1210 5.2650 8.4257 24 1 9.2216 3.8947 10.2128 25 1 9.7153 2.9031 8.0555 26 7 3.5482 -0.6489 0.0029 27 6 2.2748 -1.0801 0.0050 28 8 1.9145 -2.2427 0.0100 29 1 -0.3633 -1.0276 0.0052 30 1 -0.3632 0.5184 0.8873 31 1 -0.3634 0.5093 -0.8926 32 1 4.8318 2.1404 0.8804 33 1 4.8320 2.1328 -0.8995 34 1 5.6755 0.4623 -2.1327 35 1 5.9368 -1.1148 -1.2681 36 1 8.1232 0.6035 -2.1048 37 1 8.2383 -0.5083 -0.6720 38 1 8.9982 2.1779 0.7395 39 1 8.4465 0.5930 1.3328 40 1 6.4452 2.5024 1.9033 41 1 6.8490 4.1515 3.9940 42 1 6.2963 2.5697 4.5949 43 1 6.9283 5.3578 9.8781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733203252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:01 Heat of formation + Delta-G solvation = 71.163446 kcal Electronic energy + Delta-G solvation = -26659.242752 eV Core-core repulsion = 22677.319894 eV Total energy + Delta-G solvation = -3981.922858 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.67180 -40.63655 -38.96779 -37.55513 -34.89852 -34.33347 -32.44413 -32.27312 -31.44946 -30.12381 -27.70652 -27.54188 -25.61427 -25.32184 -23.48293 -22.06036 -21.55422 -20.56962 -19.97374 -18.87272 -17.93578 -17.11039 -17.02893 -16.55038 -16.28922 -16.16136 -15.67670 -15.43499 -15.19421 -14.97472 -14.77672 -14.32453 -13.92655 -13.82911 -13.75751 -13.34347 -13.25665 -12.91434 -12.79781 -12.60300 -12.21529 -11.96220 -11.80887 -11.45359 -11.32110 -11.27768 -11.15753 -11.00542 -10.59671 -10.47029 -10.14909 -9.85679 -9.53243 -9.26932 -9.01490 -8.92460 -8.90563 -8.49696 -6.91448 -6.29676 -4.00990 0.87196 0.95066 2.74786 2.96723 3.01286 3.12872 3.18857 3.32908 3.41581 3.51559 3.66478 3.74946 4.09194 4.26410 4.33169 4.39162 4.39639 4.50406 4.64961 4.68275 4.72772 4.81224 4.85069 4.96882 5.00250 5.09710 5.29107 5.33995 5.34867 5.40941 5.60510 5.63276 5.73566 5.76286 5.84782 5.92307 5.99627 6.45461 6.54520 6.65857 7.59327 7.60526 7.90159 7.93362 8.40060 8.51491 9.16850 10.79571 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011904 B = 0.002467 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.535402 B =11345.887680 C =13122.940578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.447 5.447 3 N -0.500 5.500 4 H 0.446 0.554 5 C 0.401 3.599 6 C 0.084 3.916 7 N -0.448 5.448 8 C 0.013 3.987 9 C -0.135 4.135 10 C 0.017 3.983 11 H 0.089 0.911 12 C 0.142 3.858 13 N -0.731 5.731 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.124 4.124 17 S -0.140 6.140 18 C -0.521 4.521 19 H 0.087 0.913 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.234 1.234 26 N -0.543 5.543 27 C 0.634 3.366 28 O -0.536 6.536 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.393 0.607 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.241 -3.339 -27.096 28.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.278 5.278 3 N -0.231 5.231 4 H 0.293 0.707 5 C 0.126 3.874 6 C -0.048 4.048 7 N -0.171 5.171 8 C -0.115 4.115 9 C -0.174 4.174 10 C -0.092 4.092 11 H 0.107 0.893 12 C 0.017 3.983 13 N -0.385 5.385 14 C 0.316 3.684 15 O -0.393 6.393 16 C -0.275 4.275 17 S 0.086 5.914 18 C -0.669 4.669 19 H 0.105 0.895 20 C -0.113 4.113 21 N -0.518 5.518 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.158 1.158 26 N -0.291 5.291 27 C 0.333 3.667 28 O -0.407 6.407 29 H 0.127 0.873 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.131 0.869 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.226 0.774 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.395 -5.693 -25.979 27.605 hybrid contribution -2.422 2.224 -0.406 3.313 sum -9.816 -3.469 -26.386 28.365 Atomic orbital electron populations 1.21888 0.73322 1.05780 1.02520 1.49518 1.04797 0.99318 1.74143 1.44806 1.02671 1.03674 1.71979 0.70700 1.23634 0.84920 0.91667 0.87216 1.21454 0.86068 0.93308 1.03946 1.68692 0.98575 1.17490 1.32369 1.23863 0.95153 1.02666 0.89853 1.23376 0.97062 0.97645 0.99270 1.23902 0.91643 0.97269 0.96419 0.89286 1.21220 0.93400 0.98676 0.84971 1.45823 1.16234 1.62955 1.13486 1.20234 0.87299 0.78452 0.82373 1.90706 1.17357 1.50830 1.80417 1.23274 1.03092 1.03041 0.98083 1.84814 1.20651 1.78723 1.07218 1.22313 1.00722 1.43693 1.00140 0.89483 1.24715 0.97878 0.93415 0.95326 1.69937 1.35337 1.38893 1.07643 0.86732 0.84443 0.81534 0.79145 1.19214 1.19958 1.15828 1.71946 1.19048 1.07522 1.30627 1.18453 0.83265 0.84844 0.80158 1.90971 1.78531 1.14539 1.56630 0.87267 0.90855 0.91053 0.86868 0.89941 0.91503 0.87812 0.90346 0.88229 0.90885 0.90569 0.77365 0.88704 0.88577 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.52 11.57 59.85 0.69 1.22 16 2 N -0.45 -3.87 4.06 -72.07 -0.29 -4.17 16 3 N -0.50 -2.68 7.36 32.73 0.24 -2.44 16 4 H 0.45 0.48 8.96 -182.32 -1.63 -1.15 16 5 C 0.40 3.01 7.69 -155.12 -1.19 1.82 16 6 C 0.08 0.39 5.25 -4.97 -0.03 0.36 16 7 N -0.45 -3.23 5.74 -232.14 -1.33 -4.56 16 8 C 0.01 0.08 6.87 -2.77 -0.02 0.06 16 9 C -0.14 -0.74 7.84 -25.79 -0.20 -0.95 16 10 C 0.02 0.10 3.40 -66.65 -0.23 -0.13 16 11 H 0.09 0.34 7.80 -51.93 -0.40 -0.07 16 12 C 0.14 1.37 5.80 -4.04 -0.02 1.35 16 13 N -0.73 -8.43 5.50 -60.30 -0.33 -8.77 16 14 C 0.53 9.07 7.85 -10.98 -0.09 8.98 16 15 O -0.52 -10.97 15.86 5.55 0.09 -10.89 16 16 C -0.12 -2.33 6.16 36.01 0.22 -2.11 16 17 S -0.14 -3.53 18.55 -107.50 -1.99 -5.52 16 18 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16 19 H 0.09 2.58 8.03 -52.48 -0.42 2.16 16 20 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 21 N -0.88 -26.47 13.97 55.49 0.78 -25.70 16 22 Si 0.86 21.73 27.74 -169.99 -4.72 17.02 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.23 -5.95 6.74 56.52 0.38 -5.57 16 26 N -0.54 -6.70 10.14 -13.83 -0.14 -6.84 16 27 C 0.63 8.69 8.97 -87.01 -0.78 7.90 16 28 O -0.54 -9.45 17.69 5.17 0.09 -9.36 16 29 H 0.11 0.64 7.80 -51.93 -0.41 0.23 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.11 0.37 6.55 -51.93 -0.34 0.03 16 33 H 0.08 0.12 7.69 -51.93 -0.40 -0.28 16 34 H 0.07 0.32 7.78 -51.93 -0.40 -0.09 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.10 0.65 7.94 -51.93 -0.41 0.24 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.89 7.91 -51.93 -0.41 0.48 16 40 H 0.39 3.37 6.59 -40.82 -0.27 3.10 16 41 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 42 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 376.87 15.07 5.68 5.68 Total: -1.00 -41.93 376.87 -10.58 -52.50 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -7.22 Total: -3.60 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -1.43 Total: 6.63 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -1.08 Total: -52.47 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: 0.18 Total: -20.25 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.72 Total: 17.02 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -41.93 -10.58 -52.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733203252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.664 kcal (2) G-P(sol) polarization free energy of solvation -41.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds