Wall clock time and date at job start Sat Apr 11 2020 06:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46969 * 2 1 4 4 C 1.35629 * 125.67531 * 257.56812 * 3 2 1 5 5 C 1.35522 * 108.85220 * 180.27168 * 4 3 2 6 6 Cl 1.73601 * 126.07809 * 179.74854 * 5 4 3 7 7 C 1.39892 * 107.85053 * 359.76365 * 5 4 3 8 8 C 1.37635 * 125.67625 * 77.44132 * 3 2 1 9 9 C 1.46665 * 126.22508 * 0.02562 * 8 3 2 10 10 O 1.21700 * 120.00553 * 173.47256 * 9 8 3 11 11 N 1.34779 * 119.99789 * 353.46472 * 9 8 3 12 12 C 1.46504 * 120.00011 * 185.31314 * 11 9 8 13 13 C 1.52999 * 113.28003 * 52.90864 * 12 11 9 14 14 C 1.52998 * 109.47098 * 67.57747 * 13 12 11 15 15 O 1.42895 * 109.47161 * 184.93677 * 14 13 12 16 16 C 1.53498 * 114.20314 * 185.97581 * 12 11 9 17 17 N 1.47066 * 87.98749 * 87.71767 * 16 12 11 18 18 C 1.36932 * 136.05782 * 207.08347 * 17 16 12 19 19 H 1.07997 * 120.00211 * 5.56061 * 18 17 16 20 20 C 1.38818 * 120.00068 * 185.56562 * 18 17 16 21 21 N 1.31618 * 119.99898 * 5.76514 * 20 18 17 22 22 Si 1.86801 * 120.00218 * 185.49570 * 20 18 17 23 23 H 1.48498 * 109.47265 * 84.99079 * 22 20 18 24 24 H 1.48500 * 109.46950 * 204.99732 * 22 20 18 25 25 H 1.48503 * 109.46888 * 324.99309 * 22 20 18 26 26 C 1.47067 * 87.88540 * 27.34182 * 17 16 12 27 27 H 1.09005 * 109.47005 * 60.00362 * 1 2 3 28 28 H 1.08998 * 109.47155 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47325 * 300.00118 * 1 2 3 30 30 H 1.08996 * 109.47325 * 239.99882 * 2 1 3 31 31 H 1.08997 * 109.47265 * 119.99665 * 2 1 3 32 32 H 1.07994 * 125.57827 * 0.03626 * 4 3 2 33 33 H 1.07992 * 126.45532 * 179.97438 * 7 5 4 34 34 H 0.97000 * 119.99788 * 5.31853 * 11 9 8 35 35 H 1.09003 * 109.46693 * 187.57198 * 13 12 11 36 36 H 1.08998 * 109.47514 * 307.57518 * 13 12 11 37 37 H 1.09000 * 109.47333 * 304.93560 * 14 13 12 38 38 H 1.09008 * 109.47153 * 64.93837 * 14 13 12 39 39 H 0.96698 * 114.00133 * 180.02562 * 15 14 13 40 40 H 1.08998 * 113.47113 * 332.93482 * 16 12 11 41 41 H 1.09004 * 113.51653 * 202.50360 * 16 12 11 42 42 H 0.97004 * 120.00343 * 179.73130 * 21 20 18 43 43 H 1.09000 * 113.47195 * 87.43688 * 26 17 16 44 44 H 1.09000 * 113.47138 * 217.88257 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.5056 2.0479 -1.0759 5 6 2.8639 3.2971 -0.6916 6 17 3.5459 4.5246 -1.7124 7 6 2.5870 3.4216 0.6740 8 6 2.0566 2.2191 1.0913 9 6 1.6195 1.8903 2.4521 10 8 1.8131 2.6770 3.3603 11 7 1.0031 0.7170 2.6970 12 6 0.4627 0.4375 4.0297 13 6 -0.4735 1.5327 4.5445 14 6 -1.7479 1.5536 3.6982 15 8 -2.5713 2.6487 4.1040 16 6 -0.0807 -0.9876 4.2023 17 7 1.2773 -1.4037 4.5836 18 6 2.0059 -2.5617 4.5277 19 1 1.5987 -3.4327 4.0360 20 6 3.2681 -2.6161 5.1031 21 7 3.7183 -1.5942 5.7997 22 14 4.3244 -4.1426 4.8951 23 1 5.0685 -4.0588 3.6127 24 1 5.2878 -4.2351 6.0214 25 1 3.4566 -5.3476 4.8859 26 6 1.5062 -0.0304 5.0576 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.5969 1.6475 -2.0747 33 1 2.7570 4.2949 1.2862 34 1 0.9173 0.0577 1.9907 35 1 -0.7311 1.3311 5.5843 36 1 0.0250 2.4995 4.4745 37 1 -1.4840 1.6675 2.6468 38 1 -2.2917 0.6191 3.8372 39 1 -3.3986 2.7233 3.6090 40 1 -0.4267 -1.4360 3.2710 41 1 -0.8064 -1.0815 5.0102 42 1 4.5987 -1.6337 6.2051 43 1 1.1991 0.1290 6.0912 44 1 2.5123 0.3368 4.8548 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734075361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:39 Heat of formation + Delta-G solvation = 31.077881 kcal Electronic energy + Delta-G solvation = -28920.524213 eV Core-core repulsion = 24902.526657 eV Total energy + Delta-G solvation = -4017.997556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -41.68086 -39.81328 -37.63624 -36.60757 -36.50498 -34.89681 -33.20821 -31.98851 -30.77220 -29.56313 -29.12212 -27.14377 -24.98866 -24.09365 -23.67759 -22.66554 -21.33319 -20.78766 -19.73428 -18.93990 -17.91420 -17.35231 -16.72767 -15.97608 -15.47906 -15.28233 -15.08716 -14.97237 -14.74831 -14.27745 -14.10984 -13.83918 -13.67740 -13.59373 -13.20389 -12.93253 -12.87822 -12.77886 -12.50302 -12.28754 -11.71590 -11.65481 -11.57969 -11.46140 -11.32855 -11.03631 -10.92432 -10.85159 -10.67472 -10.15423 -10.01632 -9.90613 -9.64774 -9.28201 -8.90273 -8.76108 -8.55395 -8.23517 -7.00643 -5.86219 -3.20250 1.45091 2.02763 2.44153 2.80700 3.31011 3.35291 3.39333 3.42504 3.56757 4.26069 4.34468 4.39302 4.57838 4.62525 4.83939 4.93990 4.99212 5.16597 5.21288 5.27243 5.33634 5.38041 5.38633 5.47445 5.67000 5.75057 5.78978 5.88501 5.88962 6.07786 6.15252 6.20967 6.40605 6.42937 6.60696 6.73122 6.82337 6.92078 7.13437 7.22582 7.51315 7.70861 7.82405 7.87130 8.51698 8.92358 9.59796 10.51615 11.31067 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009324 B = 0.004223 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3002.131615 B = 6628.468867 C = 8289.792937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.081 3.919 3 N -0.418 5.418 4 C 0.031 3.969 5 C -0.125 4.125 6 Cl -0.055 7.055 7 C -0.103 4.103 8 C -0.028 4.028 9 C 0.587 3.413 10 O -0.518 6.518 11 N -0.696 5.696 12 C 0.116 3.884 13 C -0.118 4.118 14 C 0.082 3.918 15 O -0.574 6.574 16 C 0.118 3.882 17 N -0.605 5.605 18 C -0.230 4.230 19 H 0.081 0.919 20 C -0.001 4.001 21 N -0.911 5.911 22 Si 0.911 3.089 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.281 1.281 26 C 0.165 3.835 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.175 0.825 33 H 0.156 0.844 34 H 0.398 0.602 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.037 0.963 38 H 0.043 0.957 39 H 0.372 0.628 40 H 0.039 0.961 41 H 0.049 0.951 42 H 0.256 0.744 43 H 0.040 0.960 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.019 5.785 -15.584 18.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.040 4.040 3 N -0.094 5.094 4 C -0.105 4.105 5 C -0.158 4.158 6 Cl -0.026 7.026 7 C -0.129 4.129 8 C -0.140 4.140 9 C 0.374 3.626 10 O -0.393 6.393 11 N -0.352 5.352 12 C 0.029 3.971 13 C -0.157 4.157 14 C 0.004 3.996 15 O -0.378 6.378 16 C -0.009 4.009 17 N -0.331 5.331 18 C -0.357 4.357 19 H 0.099 0.901 20 C -0.199 4.199 21 N -0.556 5.556 22 Si 0.741 3.259 23 H -0.215 1.215 24 H -0.215 1.215 25 H -0.206 1.206 26 C 0.038 3.962 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.192 0.808 33 H 0.174 0.826 34 H 0.239 0.761 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.218 0.782 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.173 5.903 -14.458 17.626 hybrid contribution 0.288 -1.316 -0.868 1.602 sum -7.885 4.587 -15.326 17.836 Atomic orbital electron populations 1.22429 0.93548 1.04257 1.04079 1.22264 0.96187 0.79546 1.06032 1.44200 1.46328 1.11347 1.07499 1.21617 1.04053 0.92045 0.92803 1.19868 1.11778 0.91661 0.92499 1.98311 1.83897 1.53258 1.67182 1.21110 1.01417 0.97362 0.93012 1.20609 1.13045 0.92099 0.88267 1.16876 0.77817 0.82195 0.85737 1.90820 1.55083 1.49756 1.43681 1.45994 1.58361 1.17541 1.13277 1.22038 0.96586 0.93930 0.84592 1.21664 0.93213 1.01282 0.99524 1.22170 0.91797 0.88200 0.97390 1.86520 1.35039 1.51717 1.64532 1.22693 0.90682 0.89556 0.97955 1.45678 1.07594 1.08009 1.71795 1.18843 0.96504 0.88896 1.31422 0.90096 1.24846 0.98136 0.97890 0.99027 1.69848 1.18865 1.30277 1.36588 0.86178 0.80327 0.82064 0.77336 1.21477 1.21512 1.20650 1.22373 0.97242 0.83497 0.93095 0.91099 0.89525 0.90806 0.87564 0.87684 0.80790 0.82619 0.76068 0.90234 0.88790 0.94460 0.93832 0.78199 0.94256 0.93353 0.93366 0.94278 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.49 9.44 37.16 0.35 -1.14 16 2 C 0.08 0.77 5.99 -4.04 -0.02 0.75 16 3 N -0.42 -5.02 2.78 -112.83 -0.31 -5.33 16 4 C 0.03 0.34 11.34 -16.84 -0.19 0.15 16 5 C -0.12 -1.58 6.66 -39.93 -0.27 -1.84 16 6 Cl -0.05 -0.62 29.30 -51.86 -1.52 -2.14 16 7 C -0.10 -1.51 10.65 -39.09 -0.42 -1.93 16 8 C -0.03 -0.42 6.85 -81.98 -0.56 -0.98 16 9 C 0.59 10.57 7.49 -12.86 -0.10 10.47 16 10 O -0.52 -10.98 14.91 5.19 0.08 -10.90 16 11 N -0.70 -11.60 4.08 -48.59 -0.20 -11.80 16 12 C 0.12 2.12 0.70 -131.56 -0.09 2.03 16 13 C -0.12 -1.98 4.92 -26.73 -0.13 -2.11 16 14 C 0.08 1.11 6.82 37.16 0.25 1.36 16 15 O -0.57 -7.66 13.66 -35.23 -0.48 -8.14 16 16 C 0.12 2.19 7.40 -8.51 -0.06 2.12 16 17 N -0.60 -14.56 3.77 -184.56 -0.70 -15.26 16 18 C -0.23 -6.08 10.74 -15.06 -0.16 -6.24 16 19 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 20 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 21 N -0.91 -26.88 11.76 55.49 0.65 -26.23 16 22 Si 0.91 21.44 29.56 -169.99 -5.02 16.41 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 C 0.16 3.89 6.65 -8.37 -0.06 3.84 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.73 6.18 -51.93 -0.32 0.41 16 30 H 0.11 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.11 1.25 6.37 -51.93 -0.33 0.92 16 32 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.16 2.28 8.06 -52.49 -0.42 1.86 16 34 H 0.40 5.78 2.93 -40.82 -0.12 5.66 16 35 H 0.08 1.34 8.00 -51.93 -0.42 0.92 16 36 H 0.09 1.80 6.02 -51.93 -0.31 1.49 16 37 H 0.04 0.48 7.83 -51.93 -0.41 0.07 16 38 H 0.04 0.52 7.81 -51.92 -0.41 0.12 16 39 H 0.37 3.02 9.12 45.56 0.42 3.44 16 40 H 0.04 0.64 8.13 -51.93 -0.42 0.22 16 41 H 0.05 0.87 8.11 -51.93 -0.42 0.45 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.04 0.96 8.00 -51.93 -0.42 0.55 16 44 H 0.07 1.93 7.51 -51.93 -0.39 1.54 16 LS Contribution 374.91 15.07 5.65 5.65 Total: -1.00 -33.95 374.91 -8.61 -42.56 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -5.20 Total: 8.84 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -1.55 Total: 6.35 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.55 Total: -58.62 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.40 Total: -19.04 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.52 Total: -2.14 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.95 -8.61 -42.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734075361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.635 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds