Wall clock time and date at job start Sat Apr 11 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46969 * 2 1 4 4 C 1.35629 * 125.67531 * 257.56812 * 3 2 1 5 5 C 1.35522 * 108.85220 * 180.27168 * 4 3 2 6 6 Cl 1.73601 * 126.07809 * 179.74854 * 5 4 3 7 7 C 1.39892 * 107.85053 * 359.76365 * 5 4 3 8 8 C 1.37635 * 125.67625 * 77.44132 * 3 2 1 9 9 C 1.46665 * 126.22508 * 0.02562 * 8 3 2 10 10 O 1.21700 * 120.00553 * 173.47256 * 9 8 3 11 11 N 1.34779 * 119.99789 * 353.46472 * 9 8 3 12 12 C 1.46504 * 120.00011 * 185.31314 * 11 9 8 13 13 C 1.52999 * 113.28003 * 52.90864 * 12 11 9 14 14 C 1.52998 * 109.47098 * 67.57747 * 13 12 11 15 15 O 1.42895 * 109.47161 * 184.93677 * 14 13 12 16 16 C 1.53498 * 114.20314 * 185.97581 * 12 11 9 17 17 N 1.47066 * 87.98749 * 87.71767 * 16 12 11 18 18 C 1.36932 * 136.05782 * 207.08347 * 17 16 12 19 19 H 1.07997 * 120.00211 * 5.56061 * 18 17 16 20 20 C 1.38818 * 120.00068 * 185.56562 * 18 17 16 21 21 N 1.31618 * 119.99898 * 5.76514 * 20 18 17 22 22 Si 1.86801 * 120.00218 * 185.49570 * 20 18 17 23 23 H 1.48498 * 109.47265 * 84.99079 * 22 20 18 24 24 H 1.48500 * 109.46950 * 204.99732 * 22 20 18 25 25 H 1.48503 * 109.46888 * 324.99309 * 22 20 18 26 26 C 1.47067 * 87.88540 * 27.34182 * 17 16 12 27 27 H 1.09005 * 109.47005 * 60.00362 * 1 2 3 28 28 H 1.08998 * 109.47155 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47325 * 300.00118 * 1 2 3 30 30 H 1.08996 * 109.47325 * 239.99882 * 2 1 3 31 31 H 1.08997 * 109.47265 * 119.99665 * 2 1 3 32 32 H 1.07994 * 125.57827 * 0.03626 * 4 3 2 33 33 H 1.07992 * 126.45532 * 179.97438 * 7 5 4 34 34 H 0.97000 * 119.99788 * 5.31853 * 11 9 8 35 35 H 1.09003 * 109.46693 * 187.57198 * 13 12 11 36 36 H 1.08998 * 109.47514 * 307.57518 * 13 12 11 37 37 H 1.09000 * 109.47333 * 304.93560 * 14 13 12 38 38 H 1.09008 * 109.47153 * 64.93837 * 14 13 12 39 39 H 0.96698 * 114.00133 * 180.02562 * 15 14 13 40 40 H 1.08998 * 113.47113 * 332.93482 * 16 12 11 41 41 H 1.09004 * 113.51653 * 202.50360 * 16 12 11 42 42 H 0.97004 * 120.00343 * 179.73130 * 21 20 18 43 43 H 1.09000 * 113.47195 * 87.43688 * 26 17 16 44 44 H 1.09000 * 113.47138 * 217.88257 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.5056 2.0479 -1.0759 5 6 2.8639 3.2971 -0.6916 6 17 3.5459 4.5246 -1.7124 7 6 2.5870 3.4216 0.6740 8 6 2.0566 2.2191 1.0913 9 6 1.6195 1.8903 2.4521 10 8 1.8131 2.6770 3.3603 11 7 1.0031 0.7170 2.6970 12 6 0.4627 0.4375 4.0297 13 6 -0.4735 1.5327 4.5445 14 6 -1.7479 1.5536 3.6982 15 8 -2.5713 2.6487 4.1040 16 6 -0.0807 -0.9876 4.2023 17 7 1.2773 -1.4037 4.5836 18 6 2.0059 -2.5617 4.5277 19 1 1.5987 -3.4327 4.0360 20 6 3.2681 -2.6161 5.1031 21 7 3.7183 -1.5942 5.7997 22 14 4.3244 -4.1426 4.8951 23 1 5.0685 -4.0588 3.6127 24 1 5.2878 -4.2351 6.0214 25 1 3.4566 -5.3476 4.8859 26 6 1.5062 -0.0304 5.0576 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.5969 1.6475 -2.0747 33 1 2.7570 4.2949 1.2862 34 1 0.9173 0.0577 1.9907 35 1 -0.7311 1.3311 5.5843 36 1 0.0250 2.4995 4.4745 37 1 -1.4840 1.6675 2.6468 38 1 -2.2917 0.6191 3.8372 39 1 -3.3986 2.7233 3.6090 40 1 -0.4267 -1.4360 3.2710 41 1 -0.8064 -1.0815 5.0102 42 1 4.5987 -1.6337 6.2051 43 1 1.1991 0.1290 6.0912 44 1 2.5123 0.3368 4.8548 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734075361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:38 Heat of formation + Delta-G solvation = 6.344414 kcal Electronic energy + Delta-G solvation = -28921.596737 eV Core-core repulsion = 24902.526657 eV Total energy + Delta-G solvation = -4019.070080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.74557 -41.27882 -39.16857 -37.71306 -37.43166 -35.96306 -34.77324 -33.62606 -32.24986 -30.44751 -30.17820 -28.97619 -26.68178 -25.47005 -24.65251 -23.88356 -22.97632 -21.79530 -20.93408 -20.39244 -18.96080 -18.79627 -18.31168 -17.13985 -17.02874 -16.56470 -16.48794 -16.06808 -15.96683 -15.66804 -15.28062 -15.22573 -15.13336 -14.96419 -14.35671 -14.19284 -14.02852 -13.85846 -13.69119 -13.34044 -13.12819 -13.00258 -12.89224 -12.80880 -12.46752 -12.44993 -12.39602 -12.30578 -11.89725 -11.79826 -11.71533 -11.35853 -11.08528 -10.90234 -10.68221 -10.10790 -9.74862 -9.26322 -8.98913 -7.93527 -5.28390 0.32137 1.10949 1.43592 1.43735 1.46272 1.54785 1.79115 2.14403 2.24770 2.43885 3.08903 3.28439 3.48882 3.56846 3.62209 3.63943 3.91684 3.96608 4.11738 4.18852 4.27181 4.32304 4.40208 4.43626 4.55380 4.64507 4.67950 4.73474 4.78225 4.82771 4.86899 4.92132 5.13135 5.17814 5.20311 5.26224 5.37907 5.44216 5.59784 5.71223 5.84535 6.03494 6.50469 6.83436 6.95595 7.15281 7.56981 8.54853 9.24638 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009324 B = 0.004223 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3002.131615 B = 6628.468867 C = 8289.792937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.073 3.927 3 N -0.411 5.411 4 C 0.063 3.937 5 C -0.142 4.142 6 Cl -0.045 7.045 7 C -0.113 4.113 8 C -0.060 4.060 9 C 0.583 3.417 10 O -0.564 6.564 11 N -0.686 5.686 12 C 0.142 3.858 13 C -0.115 4.115 14 C 0.092 3.908 15 O -0.592 6.592 16 C 0.128 3.872 17 N -0.628 5.628 18 C -0.226 4.226 19 H 0.100 0.900 20 C -0.068 4.068 21 N -0.956 5.956 22 Si 0.979 3.021 23 H -0.283 1.283 24 H -0.303 1.303 25 H -0.261 1.261 26 C 0.157 3.843 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.053 0.947 30 H 0.146 0.854 31 H 0.078 0.922 32 H 0.220 0.780 33 H 0.142 0.858 34 H 0.410 0.590 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.397 0.603 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.245 0.755 43 H 0.018 0.982 44 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.101 3.833 -19.296 22.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.047 4.047 3 N -0.086 5.086 4 C -0.075 4.075 5 C -0.175 4.175 6 Cl -0.016 7.016 7 C -0.140 4.140 8 C -0.173 4.173 9 C 0.372 3.628 10 O -0.443 6.443 11 N -0.343 5.343 12 C 0.054 3.946 13 C -0.154 4.154 14 C 0.015 3.985 15 O -0.401 6.401 16 C 0.002 3.998 17 N -0.354 5.354 18 C -0.353 4.353 19 H 0.117 0.883 20 C -0.261 4.261 21 N -0.605 5.605 22 Si 0.807 3.193 23 H -0.210 1.210 24 H -0.230 1.230 25 H -0.185 1.185 26 C 0.030 3.970 27 H 0.105 0.895 28 H 0.126 0.874 29 H 0.072 0.928 30 H 0.164 0.836 31 H 0.096 0.904 32 H 0.237 0.763 33 H 0.160 0.840 34 H 0.255 0.745 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.247 0.753 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.054 0.946 43 H 0.036 0.964 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -10.336 3.911 -18.224 21.313 hybrid contribution 0.908 -0.633 0.223 1.129 sum -9.429 3.278 -18.001 20.584 Atomic orbital electron populations 1.22421 0.92011 1.05578 1.03842 1.22549 0.97476 0.78032 1.06594 1.44396 1.45644 1.11923 1.06648 1.22309 1.00514 0.90888 0.93791 1.19944 1.12845 0.92960 0.91754 1.98313 1.83774 1.53071 1.66479 1.21191 1.01450 0.97037 0.94365 1.20159 1.15649 0.93406 0.88039 1.17299 0.77111 0.81830 0.86590 1.90792 1.56932 1.51165 1.45457 1.45925 1.57960 1.17609 1.12770 1.21638 0.94372 0.94839 0.83799 1.21554 0.94719 0.99009 1.00133 1.21991 0.90362 0.89473 0.96683 1.86454 1.36516 1.51673 1.65450 1.22816 0.88380 0.88794 0.99772 1.45932 1.10370 1.07390 1.71684 1.19380 0.96545 0.89829 1.29584 0.88269 1.25730 0.99907 1.00810 0.99692 1.70088 1.18738 1.32790 1.38845 0.85096 0.78412 0.79223 0.76579 1.21019 1.23041 1.18523 1.22287 0.96185 0.84661 0.93885 0.89492 0.87361 0.92821 0.83627 0.90396 0.76301 0.83983 0.74544 0.90741 0.91667 0.93583 0.91222 0.75327 0.90488 0.91715 0.94578 0.96401 0.96336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 9.44 71.98 0.68 -1.52 16 2 C 0.07 1.16 5.99 86.38 0.52 1.68 16 3 N -0.41 -8.97 2.78 -510.89 -1.42 -10.39 16 4 C 0.06 1.15 11.34 83.48 0.95 2.09 16 5 C -0.14 -3.38 6.66 22.04 0.15 -3.24 16 6 Cl -0.04 -0.95 29.30 -2.72 -0.08 -1.03 16 7 C -0.11 -3.41 10.65 22.59 0.24 -3.17 16 8 C -0.06 -1.86 6.85 40.35 0.28 -1.58 16 9 C 0.58 21.94 7.49 86.44 0.65 22.58 16 10 O -0.56 -25.87 14.91 -4.35 -0.06 -25.94 16 11 N -0.69 -23.06 4.08 -425.85 -1.74 -24.80 16 12 C 0.14 5.25 0.70 4.16 0.00 5.25 16 13 C -0.11 -3.92 4.92 30.59 0.15 -3.77 16 14 C 0.09 2.32 6.82 71.98 0.49 2.81 16 15 O -0.59 -14.77 13.66 -148.98 -2.03 -16.81 16 16 C 0.13 4.50 7.40 83.18 0.62 5.11 16 17 N -0.63 -30.43 3.77 -737.83 -2.78 -33.21 16 18 C -0.23 -11.88 10.74 84.04 0.90 -10.98 16 19 H 0.10 4.75 7.83 -2.91 -0.02 4.73 16 20 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 21 N -0.96 -59.39 11.76 21.65 0.25 -59.14 16 22 Si 0.98 44.57 29.56 68.60 2.03 46.60 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 24 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 25 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 26 C 0.16 7.88 6.65 83.27 0.55 8.43 16 27 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.90 6.18 -2.39 -0.01 0.88 16 30 H 0.15 1.19 8.10 -2.39 -0.02 1.17 16 31 H 0.08 1.71 6.37 -2.39 -0.02 1.70 16 32 H 0.22 1.98 8.06 -2.91 -0.02 1.95 16 33 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 34 H 0.41 11.47 2.93 -92.71 -0.27 11.20 16 35 H 0.07 2.57 8.00 -2.39 -0.02 2.55 16 36 H 0.06 2.64 6.02 -2.39 -0.01 2.63 16 37 H 0.05 1.08 7.83 -2.39 -0.02 1.06 16 38 H 0.07 1.41 7.81 -2.38 -0.02 1.39 16 39 H 0.40 5.38 9.12 -74.06 -0.68 4.71 16 40 H 0.08 2.18 8.13 -2.39 -0.02 2.16 16 41 H 0.07 2.16 8.11 -2.38 -0.02 2.14 16 42 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 43 H 0.02 0.96 8.00 -2.39 -0.02 0.94 16 44 H 0.02 1.09 7.51 -2.39 -0.02 1.07 16 Total: -1.00 -80.30 374.91 0.90 -79.40 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.10 Total: 24.96 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 6.64 Total: 20.34 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -5.68 Total: -127.53 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -2.10 Total: -42.74 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.03 kcal Total: -80.30 0.90 -79.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734075361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.746 kcal (2) G-P(sol) polarization free energy of solvation -80.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds