Wall clock time and date at job start Sat Apr 11 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46962 * 2 1 4 4 C 1.52997 * 109.47216 * 119.99870 * 2 1 3 5 5 N 1.46499 * 109.47145 * 175.00095 * 4 2 1 6 6 C 1.34775 * 120.00345 * 180.02562 * 5 4 2 7 7 O 1.21291 * 119.99907 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00503 * 179.97438 * 6 5 4 9 9 S 1.81001 * 109.47333 * 179.97438 * 8 6 5 10 10 C 1.76196 * 99.99823 * 180.02562 * 9 8 6 11 11 H 1.07997 * 120.00409 * 359.97438 * 10 9 8 12 12 C 1.38800 * 120.00014 * 180.02562 * 10 9 8 13 13 N 1.31636 * 120.00051 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00100 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47072 * 90.00123 * 14 12 10 16 16 H 1.48506 * 109.46763 * 209.99808 * 14 12 10 17 17 H 1.48494 * 109.47083 * 329.99963 * 14 12 10 18 18 N 1.46497 * 109.47182 * 239.99891 * 2 1 3 19 19 C 1.46500 * 120.00055 * 300.00011 * 18 2 1 20 20 C 1.34779 * 120.00139 * 120.27407 * 18 2 1 21 21 O 1.21563 * 119.99622 * 5.05109 * 20 18 2 22 22 C 1.47799 * 120.00246 * 185.05741 * 20 18 2 23 23 C 1.40917 * 127.23758 * 186.03158 * 22 20 18 24 24 N 1.31136 * 105.77649 * 179.97438 * 23 22 20 25 25 N 1.28517 * 109.05928 * 0.02562 * 24 23 22 26 26 C 1.46494 * 124.44337 * 179.97438 * 25 24 23 27 27 N 1.28588 * 111.10867 * 359.71694 * 25 24 23 28 28 H 1.08994 * 109.47591 * 59.99994 * 1 2 3 29 29 H 1.09004 * 109.47301 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46958 * 299.99689 * 1 2 3 31 31 H 1.09005 * 109.47260 * 294.99763 * 4 2 1 32 32 H 1.09003 * 109.47408 * 54.99834 * 4 2 1 33 33 H 0.97004 * 120.00389 * 359.97438 * 5 4 2 34 34 H 1.08992 * 109.46999 * 300.00481 * 8 6 5 35 35 H 1.09003 * 109.46503 * 60.00122 * 8 6 5 36 36 H 0.96993 * 120.00328 * 180.02562 * 13 12 10 37 37 H 1.08998 * 109.47064 * 95.29417 * 19 18 2 38 38 H 1.08996 * 109.46975 * 215.29876 * 19 18 2 39 39 H 1.09001 * 109.46894 * 335.29551 * 19 18 2 40 40 H 1.07998 * 127.11307 * 359.97329 * 23 22 20 41 41 H 1.09011 * 109.47087 * 90.01930 * 26 25 24 42 42 H 1.08995 * 109.47411 * 210.01845 * 26 25 24 43 43 H 1.08999 * 109.47522 * 330.02566 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1906 6 6 4.1731 -1.4291 2.1906 7 8 3.5700 -1.8841 3.1395 8 6 5.6749 -1.5377 2.1300 9 16 6.2783 -2.3908 3.6080 10 6 8.0100 -2.3778 3.2831 11 1 8.3862 -1.9254 2.3775 12 6 8.8907 -2.9500 4.1906 13 7 8.4322 -3.5019 5.2942 14 14 10.7266 -2.9368 3.8459 15 1 11.3286 -1.7053 4.4168 16 1 11.3555 -4.1296 4.4682 17 1 10.9549 -2.9654 2.3789 18 7 2.0183 -0.6906 -1.1961 19 6 1.6644 -2.0932 -1.4279 20 6 2.7977 -0.0373 -2.0805 21 8 3.1712 1.0946 -1.8414 22 6 3.1983 -0.6969 -3.3411 23 6 4.0960 -0.2083 -4.3113 24 7 4.1421 -1.1249 -5.2480 25 7 3.3644 -2.0955 -4.9241 26 6 3.1602 -3.2991 -5.7337 27 7 2.7933 -1.8738 -3.7935 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.7517 -0.1582 2.1370 32 1 1.6054 -1.7198 1.2952 33 1 3.9824 -0.4627 0.4315 34 1 5.9629 -2.1004 1.2422 35 1 6.1098 -0.5392 2.0843 36 1 9.0476 -3.9014 5.9286 37 1 0.7909 -2.1449 -2.0778 38 1 2.5013 -2.6054 -1.9026 39 1 1.4378 -2.5728 -0.4757 40 1 4.6346 0.7274 -4.2882 41 1 3.8875 -4.0584 -5.4459 42 1 2.1525 -3.6807 -5.5697 43 1 3.2888 -3.0541 -6.7880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734744978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:01 Heat of formation + Delta-G solvation = 52.690047 kcal Electronic energy + Delta-G solvation = -27143.520135 eV Core-core repulsion = 23160.796211 eV Total energy + Delta-G solvation = -3982.723925 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.03401 -40.38637 -38.95346 -36.84423 -34.47779 -34.00283 -33.08791 -32.40698 -31.72224 -29.37474 -28.44656 -27.24360 -26.00398 -25.37707 -24.66403 -22.47785 -21.66177 -20.29993 -19.66829 -17.83747 -17.78261 -17.54024 -17.37128 -16.66722 -16.30737 -15.98934 -15.35498 -15.17904 -15.00615 -14.78403 -14.20365 -14.01147 -13.72354 -13.48719 -13.42286 -13.29742 -13.10118 -12.91086 -12.79413 -12.63487 -12.55611 -12.19645 -12.10118 -11.73645 -11.24210 -11.16122 -11.04405 -11.00118 -10.78019 -10.74157 -10.46185 -9.82783 -9.79665 -9.39502 -9.04952 -9.02616 -8.85485 -8.21463 -6.47512 -6.19698 -3.89866 0.92388 1.59237 1.74193 2.53659 2.89027 3.06805 3.13296 3.24081 3.29572 3.34406 3.49828 3.75476 4.19779 4.22658 4.48030 4.49684 4.57540 4.67264 4.76918 4.79120 4.89558 4.95043 5.15412 5.18346 5.26710 5.30561 5.33102 5.39391 5.48796 5.57059 5.66836 5.69951 5.75280 5.87968 5.93127 6.12665 6.18392 6.20027 6.63752 6.92533 7.61987 7.63919 7.73397 7.81533 8.37653 8.64002 9.25733 10.87769 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010634 B = 0.002800 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.473397 B = 9998.412411 C =11737.115706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.124 3.876 3 H 0.112 0.888 4 C 0.112 3.888 5 N -0.735 5.735 6 C 0.533 3.467 7 O -0.519 6.519 8 C -0.153 4.153 9 S -0.059 6.059 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.276 1.276 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.595 5.595 19 C 0.081 3.919 20 C 0.608 3.392 21 O -0.525 6.525 22 C -0.046 4.046 23 C 0.038 3.962 24 N -0.290 5.290 25 N -0.145 5.145 26 C 0.103 3.897 27 N -0.244 5.244 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.398 0.602 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.268 0.732 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.209 0.791 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.938 3.460 -23.199 28.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.021 3.979 3 H 0.130 0.870 4 C -0.013 4.013 5 N -0.390 5.390 6 C 0.319 3.681 7 O -0.393 6.393 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.683 4.683 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.504 5.504 14 Si 0.745 3.255 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.197 1.197 18 N -0.328 5.328 19 C -0.062 4.062 20 C 0.393 3.607 21 O -0.399 6.399 22 C -0.208 4.208 23 C -0.146 4.146 24 N -0.130 5.130 25 N -0.048 5.048 26 C -0.037 4.037 27 N -0.093 5.093 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.232 0.768 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.225 0.775 41 H 0.114 0.886 42 H 0.124 0.876 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.911 2.068 -22.061 28.491 hybrid contribution 2.240 1.240 -1.294 2.869 sum -15.670 3.309 -23.355 28.319 Atomic orbital electron populations 1.22052 0.93295 1.03048 1.03114 1.21488 0.95084 0.98411 0.82897 0.87039 1.21660 0.81404 1.01196 0.97085 1.45929 1.06772 1.61761 1.24493 1.20284 0.89481 0.76734 0.81603 1.90697 1.69875 1.46249 1.32525 1.23525 0.93661 1.05700 1.07484 1.85343 1.04543 1.73073 1.20293 1.22877 0.91588 1.44199 1.09656 0.90958 1.24988 0.99568 0.94542 0.94470 1.70019 1.35369 1.35570 1.09399 0.86171 0.82953 0.77848 0.78556 1.20231 1.20759 1.19715 1.47727 1.49709 1.13195 1.22213 1.21964 1.01942 0.80341 1.01976 1.16744 0.78142 0.84807 0.81003 1.90841 1.54957 1.17739 1.76376 1.22952 1.04163 0.93701 1.00025 1.24867 0.99625 1.00366 0.89720 1.74048 1.14319 0.98157 1.26435 1.48150 1.27612 1.15991 1.13011 1.22279 1.05125 0.81335 0.94949 1.74587 1.19302 1.16591 0.98836 0.91723 0.91738 0.90584 0.90157 0.91161 0.76786 0.89476 0.89204 0.92210 0.92176 0.89879 0.90663 0.77453 0.88627 0.87561 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.19 37.16 0.34 -0.72 16 2 C 0.12 1.15 2.79 -67.93 -0.19 0.96 16 3 H 0.11 1.16 6.91 -51.93 -0.36 0.80 16 4 C 0.11 1.29 4.93 -4.04 -0.02 1.27 16 5 N -0.73 -10.64 5.39 -60.29 -0.32 -10.96 16 6 C 0.53 10.31 7.85 -10.99 -0.09 10.22 16 7 O -0.52 -11.88 15.86 5.55 0.09 -11.79 16 8 C -0.15 -3.24 6.16 36.01 0.22 -3.02 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.53 -15.54 9.50 30.94 0.29 -15.25 16 11 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 12 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 13 N -0.87 -26.45 13.22 55.49 0.73 -25.72 16 14 Si 0.92 21.73 29.55 -169.99 -5.02 16.71 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 N -0.60 -5.77 2.25 -175.07 -0.39 -6.16 16 19 C 0.08 0.67 8.38 59.85 0.50 1.17 16 20 C 0.61 6.96 7.36 -12.35 -0.09 6.87 16 21 O -0.52 -7.21 16.30 5.31 0.09 -7.12 16 22 C -0.05 -0.49 6.80 -82.68 -0.56 -1.06 16 23 C 0.04 0.38 12.05 -16.84 -0.20 0.18 16 24 N -0.29 -2.86 12.01 30.89 0.37 -2.49 16 25 N -0.15 -1.21 4.34 -16.64 -0.07 -1.28 16 26 C 0.10 0.33 11.55 59.84 0.69 1.03 16 27 N -0.24 -2.31 8.95 33.42 0.30 -2.01 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.82 6.87 -51.93 -0.36 0.46 16 33 H 0.40 5.41 7.85 -40.82 -0.32 5.08 16 34 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 35 H 0.09 1.80 8.14 -51.91 -0.42 1.37 16 36 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.76 5.93 -51.93 -0.31 0.46 16 39 H 0.07 0.60 6.54 -51.93 -0.34 0.27 16 40 H 0.21 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.10 0.22 8.14 -51.92 -0.42 -0.21 16 42 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.11 0.18 8.14 -51.93 -0.42 -0.25 16 LS Contribution 381.04 15.07 5.74 5.74 Total: -1.00 -37.89 381.04 -5.76 -43.65 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.85 Total: 1.61 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 0.80 Total: 3.68 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: 0.61 Total: -48.63 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.17 Total: -18.91 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.89 -5.76 -43.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734744978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.337 kcal (2) G-P(sol) polarization free energy of solvation -37.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds