Wall clock time and date at job start Sat Apr 11 2020 06:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46962 * 2 1 4 4 C 1.52997 * 109.47216 * 119.99870 * 2 1 3 5 5 N 1.46499 * 109.47145 * 175.00095 * 4 2 1 6 6 C 1.34775 * 120.00345 * 180.02562 * 5 4 2 7 7 O 1.21291 * 119.99907 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00503 * 179.97438 * 6 5 4 9 9 S 1.81001 * 109.47333 * 179.97438 * 8 6 5 10 10 C 1.76196 * 99.99823 * 180.02562 * 9 8 6 11 11 H 1.07997 * 120.00409 * 359.97438 * 10 9 8 12 12 C 1.38800 * 120.00014 * 180.02562 * 10 9 8 13 13 N 1.31636 * 120.00051 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00100 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47072 * 90.00123 * 14 12 10 16 16 H 1.48506 * 109.46763 * 209.99808 * 14 12 10 17 17 H 1.48494 * 109.47083 * 329.99963 * 14 12 10 18 18 N 1.46497 * 109.47182 * 239.99891 * 2 1 3 19 19 C 1.46500 * 120.00055 * 300.00011 * 18 2 1 20 20 C 1.34779 * 120.00139 * 120.27407 * 18 2 1 21 21 O 1.21563 * 119.99622 * 5.05109 * 20 18 2 22 22 C 1.47799 * 120.00246 * 185.05741 * 20 18 2 23 23 C 1.40917 * 127.23758 * 186.03158 * 22 20 18 24 24 N 1.31136 * 105.77649 * 179.97438 * 23 22 20 25 25 N 1.28517 * 109.05928 * 0.02562 * 24 23 22 26 26 C 1.46494 * 124.44337 * 179.97438 * 25 24 23 27 27 N 1.28588 * 111.10867 * 359.71694 * 25 24 23 28 28 H 1.08994 * 109.47591 * 59.99994 * 1 2 3 29 29 H 1.09004 * 109.47301 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46958 * 299.99689 * 1 2 3 31 31 H 1.09005 * 109.47260 * 294.99763 * 4 2 1 32 32 H 1.09003 * 109.47408 * 54.99834 * 4 2 1 33 33 H 0.97004 * 120.00389 * 359.97438 * 5 4 2 34 34 H 1.08992 * 109.46999 * 300.00481 * 8 6 5 35 35 H 1.09003 * 109.46503 * 60.00122 * 8 6 5 36 36 H 0.96993 * 120.00328 * 180.02562 * 13 12 10 37 37 H 1.08998 * 109.47064 * 95.29417 * 19 18 2 38 38 H 1.08996 * 109.46975 * 215.29876 * 19 18 2 39 39 H 1.09001 * 109.46894 * 335.29551 * 19 18 2 40 40 H 1.07998 * 127.11307 * 359.97329 * 23 22 20 41 41 H 1.09011 * 109.47087 * 90.01930 * 26 25 24 42 42 H 1.08995 * 109.47411 * 210.01845 * 26 25 24 43 43 H 1.08999 * 109.47522 * 330.02566 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1906 6 6 4.1731 -1.4291 2.1906 7 8 3.5700 -1.8841 3.1395 8 6 5.6749 -1.5377 2.1300 9 16 6.2783 -2.3908 3.6080 10 6 8.0100 -2.3778 3.2831 11 1 8.3862 -1.9254 2.3775 12 6 8.8907 -2.9500 4.1906 13 7 8.4322 -3.5019 5.2942 14 14 10.7266 -2.9368 3.8459 15 1 11.3286 -1.7053 4.4168 16 1 11.3555 -4.1296 4.4682 17 1 10.9549 -2.9654 2.3789 18 7 2.0183 -0.6906 -1.1961 19 6 1.6644 -2.0932 -1.4279 20 6 2.7977 -0.0373 -2.0805 21 8 3.1712 1.0946 -1.8414 22 6 3.1983 -0.6969 -3.3411 23 6 4.0960 -0.2083 -4.3113 24 7 4.1421 -1.1249 -5.2480 25 7 3.3644 -2.0955 -4.9241 26 6 3.1602 -3.2991 -5.7337 27 7 2.7933 -1.8738 -3.7935 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.7517 -0.1582 2.1370 32 1 1.6054 -1.7198 1.2952 33 1 3.9824 -0.4627 0.4315 34 1 5.9629 -2.1004 1.2422 35 1 6.1098 -0.5392 2.0843 36 1 9.0476 -3.9014 5.9286 37 1 0.7909 -2.1449 -2.0778 38 1 2.5013 -2.6054 -1.9026 39 1 1.4378 -2.5728 -0.4757 40 1 4.6346 0.7274 -4.2882 41 1 3.8875 -4.0584 -5.4459 42 1 2.1525 -3.6807 -5.5697 43 1 3.2888 -3.0541 -6.7880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734744978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:00 Heat of formation + Delta-G solvation = 24.306652 kcal Electronic energy + Delta-G solvation = -27144.750932 eV Core-core repulsion = 23160.796211 eV Total energy + Delta-G solvation = -3983.954721 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.71904 -41.32539 -40.35734 -37.80108 -35.46775 -34.75886 -34.60113 -33.91572 -32.59217 -30.88199 -28.95398 -27.95597 -27.75719 -26.82184 -25.44009 -23.11716 -22.44439 -21.76790 -20.53375 -19.79563 -18.46368 -18.29412 -18.07847 -17.85257 -17.59910 -17.10053 -16.89617 -16.47963 -16.27301 -15.86441 -15.77136 -15.10086 -14.85877 -14.54795 -14.31223 -14.13104 -13.92554 -13.81698 -13.65884 -13.49842 -13.47170 -13.18713 -13.12066 -12.97072 -12.89861 -12.81550 -12.60178 -12.00281 -11.88075 -11.74734 -11.49977 -11.33680 -11.16019 -11.01594 -10.49585 -10.31899 -10.16617 -9.81990 -8.68594 -8.36491 -6.14649 0.17553 0.85969 1.22508 1.24884 1.41044 1.44467 1.55677 1.56510 1.80017 2.06566 2.24062 2.27605 2.81807 2.97429 3.29057 3.49432 3.68435 3.89385 3.95129 4.04875 4.17312 4.21788 4.24271 4.29128 4.31201 4.45230 4.49430 4.58074 4.65314 4.68057 4.72272 4.78417 4.86166 4.98265 5.03066 5.25146 5.34337 5.39889 5.47679 5.55876 6.12528 6.17997 6.37153 6.84877 7.04715 7.06934 7.15745 8.72783 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010634 B = 0.002800 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.473397 B = 9998.412411 C =11737.115706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.132 3.868 3 H 0.102 0.898 4 C 0.110 3.890 5 N -0.713 5.713 6 C 0.537 3.463 7 O -0.558 6.558 8 C -0.132 4.132 9 S -0.140 6.140 10 C -0.550 4.550 11 H 0.079 0.921 12 C 0.015 3.985 13 N -0.910 5.910 14 Si 0.998 3.002 15 H -0.268 1.268 16 H -0.275 1.275 17 H -0.260 1.260 18 N -0.592 5.592 19 C 0.082 3.918 20 C 0.606 3.394 21 O -0.555 6.555 22 C -0.068 4.068 23 C 0.027 3.973 24 N -0.302 5.302 25 N -0.138 5.138 26 C 0.088 3.912 27 N -0.241 5.241 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.405 0.595 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.272 0.728 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.219 0.781 41 H 0.108 0.892 42 H 0.126 0.874 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.112 3.363 -25.269 30.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.029 3.971 3 H 0.120 0.880 4 C -0.014 4.014 5 N -0.366 5.366 6 C 0.323 3.677 7 O -0.437 6.437 8 C -0.283 4.283 9 S 0.087 5.913 10 C -0.698 4.698 11 H 0.097 0.903 12 C -0.190 4.190 13 N -0.546 5.546 14 Si 0.820 3.180 15 H -0.193 1.193 16 H -0.200 1.200 17 H -0.184 1.184 18 N -0.324 5.324 19 C -0.060 4.060 20 C 0.392 3.608 21 O -0.432 6.432 22 C -0.228 4.228 23 C -0.155 4.155 24 N -0.142 5.142 25 N -0.042 5.042 26 C -0.049 4.049 27 N -0.091 5.091 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.240 0.760 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.236 0.764 41 H 0.126 0.874 42 H 0.145 0.855 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.122 1.979 -24.174 30.277 hybrid contribution 2.181 1.238 -0.773 2.624 sum -15.941 3.216 -24.946 29.779 Atomic orbital electron populations 1.22018 0.90869 1.04000 1.03891 1.21453 0.96746 0.97334 0.81586 0.88004 1.21897 0.79110 1.01930 0.98504 1.45748 1.08152 1.59666 1.23052 1.19935 0.88690 0.77043 0.82062 1.90687 1.70246 1.48426 1.34298 1.23374 0.95190 1.05503 1.04281 1.85453 1.05636 1.74847 1.25321 1.23199 0.91864 1.44575 1.10150 0.90281 1.26108 1.05172 0.93690 0.93981 1.70170 1.37426 1.36434 1.10558 0.84965 0.75848 0.78239 0.78998 1.19269 1.19993 1.18416 1.47804 1.49071 1.13698 1.21843 1.22024 1.02238 0.79285 1.02461 1.16880 0.77955 0.84529 0.81418 1.90818 1.56262 1.18989 1.77132 1.22889 1.05273 0.94464 1.00221 1.25135 0.99751 1.00983 0.89681 1.74041 1.14958 0.98641 1.26593 1.48716 1.26333 1.16472 1.12727 1.22776 1.06793 0.80009 0.95368 1.74550 1.19263 1.16020 0.99253 0.91342 0.90695 0.89422 0.90010 0.90626 0.75953 0.87953 0.87865 0.91884 0.90532 0.90678 0.90265 0.76420 0.87403 0.85524 0.85825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.19 71.98 0.66 -1.02 16 2 C 0.13 2.24 2.79 44.99 0.13 2.36 16 3 H 0.10 2.00 6.91 -2.38 -0.02 1.99 16 4 C 0.11 2.39 4.93 86.38 0.43 2.81 16 5 N -0.71 -19.92 5.39 -463.05 -2.49 -22.41 16 6 C 0.54 20.60 7.85 87.66 0.69 21.29 16 7 O -0.56 -25.81 15.86 -3.06 -0.05 -25.86 16 8 C -0.13 -5.57 6.16 71.24 0.44 -5.13 16 9 S -0.14 -7.91 20.57 -56.49 -1.16 -9.07 16 10 C -0.55 -32.14 9.50 67.95 0.65 -31.50 16 11 H 0.08 4.35 7.80 -2.91 -0.02 4.32 16 12 C 0.02 0.89 5.49 84.86 0.47 1.36 16 13 N -0.91 -56.25 13.22 21.65 0.29 -55.97 16 14 Si 1.00 44.26 29.55 68.60 2.03 46.29 16 15 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 18 N -0.59 -10.64 2.25 -826.06 -1.86 -12.50 16 19 C 0.08 1.20 8.38 127.77 1.07 2.27 16 20 C 0.61 13.43 7.36 86.77 0.64 14.07 16 21 O -0.56 -15.11 16.30 -3.91 -0.06 -15.17 16 22 C -0.07 -1.39 6.80 42.24 0.29 -1.11 16 23 C 0.03 0.53 12.05 85.45 1.03 1.56 16 24 N -0.30 -5.62 12.01 -56.17 -0.67 -6.29 16 25 N -0.14 -2.08 4.34 -206.55 -0.90 -2.97 16 26 C 0.09 0.37 11.55 127.77 1.48 1.85 16 27 N -0.24 -4.20 8.95 -48.17 -0.43 -4.63 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.71 7.67 -2.38 -0.02 0.69 16 30 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.08 1.63 6.87 -2.39 -0.02 1.61 16 33 H 0.41 10.51 7.85 -92.71 -0.73 9.78 16 34 H 0.10 3.98 8.14 -2.40 -0.02 3.96 16 35 H 0.10 4.06 8.14 -2.39 -0.02 4.04 16 36 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 1.26 5.93 -2.39 -0.01 1.25 16 39 H 0.08 1.11 6.54 -2.39 -0.02 1.09 16 40 H 0.22 3.42 8.06 -2.91 -0.02 3.40 16 41 H 0.11 0.24 8.14 -2.38 -0.02 0.22 16 42 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 43 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 Total: -1.00 -83.23 381.04 2.96 -80.27 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.32 Total: 19.50 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 7.95 Total: 8.82 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -6.07 Total: -104.77 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -0.11 Total: -41.04 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -7.91 SS G_CDS: -1.16 Total: -9.07 kcal Total: -83.23 2.96 -80.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734744978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.574 kcal (2) G-P(sol) polarization free energy of solvation -83.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds