Wall clock time and date at job start Sat Apr 11 2020 06:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.46840 * 180.02562 * 6 5 4 8 8 C 1.34779 * 119.99872 * 179.97438 * 7 6 5 9 9 O 1.21553 * 119.99965 * 359.97438 * 8 7 6 10 10 C 1.47870 * 120.00001 * 179.97438 * 8 7 6 11 11 N 1.34551 * 126.04902 * 179.97438 * 10 8 7 12 12 C 1.30866 * 107.26854 * 179.97438 * 11 10 8 13 13 N 1.34587 * 107.62875 * 0.02562 * 12 11 10 14 14 H 0.96996 * 125.75129 * 179.97438 * 13 12 11 15 15 N 1.28853 * 108.50294 * 359.72997 * 13 12 11 16 16 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 17 17 C 1.34773 * 120.00306 * 84.99801 * 16 2 1 18 18 O 1.21292 * 119.99815 * 0.02562 * 17 16 2 19 19 C 1.50694 * 120.00409 * 179.97438 * 17 16 2 20 20 S 1.81002 * 109.47414 * 179.97438 * 19 17 16 21 21 C 1.76203 * 100.00112 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99904 * 0.02562 * 21 20 19 23 23 C 1.38795 * 119.99925 * 180.02562 * 21 20 19 24 24 N 1.31636 * 120.00258 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00209 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47058 * 90.00181 * 25 23 21 27 27 H 1.48501 * 109.47242 * 210.00255 * 25 23 21 28 28 H 1.48494 * 109.47103 * 330.00191 * 25 23 21 29 29 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 30 30 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 31 31 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 33 33 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 37 37 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 38 38 H 0.97005 * 120.00448 * 359.97438 * 7 6 5 39 39 H 1.08003 * 126.18876 * 179.97438 * 12 11 10 40 40 H 0.97003 * 120.00235 * 265.00555 * 16 2 1 41 41 H 1.08997 * 109.47334 * 300.00478 * 19 17 16 42 42 H 1.09008 * 109.47061 * 60.00564 * 19 17 16 43 43 H 0.96991 * 120.00114 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 6 4.0749 -1.3354 2.5623 7 7 5.5348 -1.2316 2.6243 8 6 6.2079 -1.7968 3.6461 9 8 5.6034 -2.3923 4.5164 10 6 7.6816 -1.6924 3.7084 11 7 8.4719 -2.2073 4.6679 12 6 9.7063 -1.8993 4.3611 13 7 9.6778 -1.1951 3.2145 14 1 10.4501 -0.8348 2.7514 15 7 8.4520 -1.0846 2.8329 16 7 2.0183 -0.6905 -1.1963 17 6 2.1470 -0.0181 -2.3572 18 8 1.8589 1.1589 -2.4114 19 6 2.6498 -0.7281 -3.5876 20 16 2.7098 0.4348 -4.9733 21 6 3.3130 -0.6303 -6.2407 22 1 3.5224 -1.6667 -6.0208 23 6 3.5189 -0.1373 -7.5217 24 7 3.9691 -0.9330 -8.4688 25 14 3.1560 1.6552 -7.9023 26 1 4.3746 2.4689 -7.6614 27 1 2.7461 1.7863 -9.3236 28 1 2.0587 2.1352 -7.0245 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7716 1.2053 33 1 1.6054 -0.2620 2.1368 34 1 3.8532 0.4368 1.3572 35 1 3.9994 -1.0729 0.4257 36 1 3.6403 -0.8764 3.4503 37 1 3.7865 -2.3856 2.5181 38 1 6.0172 -0.7560 1.9299 39 1 10.5884 -2.1619 4.9263 40 1 2.2489 -1.6317 -1.1529 41 1 3.6491 -1.1200 -3.3981 42 1 1.9775 -1.5504 -3.8328 43 1 4.1134 -0.5884 -9.3639 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735017597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:05 Heat of formation + Delta-G solvation = -0.036695 kcal Electronic energy + Delta-G solvation = -25643.157122 eV Core-core repulsion = 21658.146794 eV Total energy + Delta-G solvation = -3985.010328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.96915 -39.87863 -39.49749 -36.90500 -35.28708 -33.90703 -32.84240 -32.45164 -31.91783 -30.77387 -28.64825 -26.92344 -25.62684 -24.62398 -23.40521 -22.19327 -21.54866 -20.72410 -20.40157 -19.39499 -17.88451 -17.76443 -16.91310 -16.67097 -16.55038 -16.00588 -15.70642 -15.33280 -15.06257 -14.96919 -14.56841 -14.32813 -13.98051 -13.73948 -13.44210 -13.24679 -12.80952 -12.73419 -12.66784 -12.49671 -12.05601 -11.87549 -11.49626 -11.29245 -11.24833 -11.20768 -11.03332 -11.01912 -10.94056 -10.60811 -10.57445 -10.27183 -9.86956 -9.50410 -9.48201 -9.03388 -8.97015 -8.51227 -6.92994 -6.30321 -4.01981 0.85239 1.63472 2.07582 2.51925 2.76505 2.96594 2.97776 3.30021 3.33551 3.49136 3.66035 3.76576 3.95707 4.29192 4.31739 4.36707 4.61291 4.71380 4.72784 4.94866 5.08687 5.11715 5.21240 5.29818 5.34701 5.41877 5.42333 5.51601 5.62992 5.70621 5.73633 5.75723 5.84696 5.97530 6.00324 6.01818 6.16088 6.16818 6.60533 6.96829 7.46360 7.62868 7.76873 7.92787 8.40306 8.50563 9.15884 10.78919 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010603 B = 0.002064 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.170910 B =13563.612513 C =15656.950813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.088 0.912 4 C -0.122 4.122 5 C -0.135 4.135 6 C 0.121 3.879 7 N -0.713 5.713 8 C 0.614 3.386 9 O -0.510 6.510 10 C 0.149 3.851 11 N -0.463 5.463 12 C 0.198 3.802 13 N -0.396 5.396 14 H 0.454 0.546 15 N -0.273 5.273 16 N -0.732 5.732 17 C 0.531 3.469 18 O -0.520 6.520 19 C -0.125 4.125 20 S -0.142 6.142 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.881 5.881 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.410 0.590 39 H 0.232 0.768 40 H 0.398 0.602 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.010 -1.418 26.498 27.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.107 0.893 4 C -0.160 4.160 5 C -0.172 4.172 6 C -0.002 4.002 7 N -0.366 5.366 8 C 0.395 3.605 9 O -0.381 6.381 10 C -0.131 4.131 11 N -0.187 5.187 12 C -0.100 4.100 13 N -0.119 5.119 14 H 0.301 0.699 15 N -0.115 5.115 16 N -0.386 5.386 17 C 0.317 3.683 18 O -0.395 6.395 19 C -0.275 4.275 20 S 0.084 5.916 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.114 4.114 24 N -0.517 5.517 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.245 0.755 39 H 0.248 0.752 40 H 0.232 0.768 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.587 0.146 26.677 27.479 hybrid contribution 1.616 -0.823 -0.919 2.034 sum 8.203 -0.677 25.758 27.041 Atomic orbital electron populations 1.22185 0.95301 1.02133 1.02662 1.20897 0.94014 0.97644 0.83615 0.89343 1.21795 0.94488 1.01764 0.97976 1.21839 0.96376 1.01636 0.97390 1.21492 0.78159 1.01599 0.98976 1.45767 1.08347 1.56292 1.26204 1.16269 0.82516 0.79452 0.82259 1.90847 1.67633 1.41380 1.38275 1.23857 0.96574 1.01373 0.91339 1.71319 0.99839 1.21894 1.25631 1.26789 0.98487 0.95693 0.89038 1.45155 1.07230 1.39725 1.19839 0.69942 1.74285 0.91010 1.21648 1.24580 1.46091 1.69101 1.13932 1.09521 1.20260 0.76907 0.87222 0.83873 1.90698 1.48546 1.15776 1.84449 1.23288 1.04406 1.03473 0.96380 1.84783 1.87198 1.16837 1.02770 1.22320 1.50337 0.98800 0.95408 0.89411 1.24721 0.93389 0.98297 0.94962 1.69939 1.43418 1.35798 1.02564 0.86730 0.81098 0.84835 0.79152 1.19240 1.19956 1.15919 0.91848 0.91726 0.92490 0.90832 0.89961 0.90737 0.90576 0.90906 0.90850 0.75471 0.75152 0.76783 0.88610 0.88536 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.48 37.16 0.35 -1.24 16 2 C 0.14 1.40 2.57 -67.93 -0.17 1.23 16 3 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 4 C -0.12 -0.79 4.75 -26.74 -0.13 -0.92 16 5 C -0.13 -0.91 5.22 -26.73 -0.14 -1.05 16 6 C 0.12 0.91 5.67 -4.04 -0.02 0.88 16 7 N -0.71 -6.20 5.55 -61.24 -0.34 -6.54 16 8 C 0.61 7.13 7.83 -12.32 -0.10 7.04 16 9 O -0.51 -7.60 17.09 5.32 0.09 -7.51 16 10 C 0.15 1.59 7.96 -156.34 -1.24 0.34 16 11 N -0.46 -4.71 11.41 -12.36 -0.14 -4.86 16 12 C 0.20 0.93 13.14 -90.48 -1.19 -0.25 16 13 N -0.40 -1.69 6.93 29.56 0.20 -1.48 16 14 H 0.45 0.00 8.96 -190.21 -1.70 -1.70 16 15 N -0.27 -2.24 11.98 32.08 0.38 -1.86 16 16 N -0.73 -8.40 4.53 -53.81 -0.24 -8.64 16 17 C 0.53 8.92 7.81 -10.99 -0.09 8.83 16 18 O -0.52 -10.76 15.53 5.55 0.09 -10.67 16 19 C -0.12 -2.34 6.16 36.00 0.22 -2.11 16 20 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 21 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16 22 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 23 C 0.09 2.76 5.50 -17.43 -0.10 2.66 16 24 N -0.88 -26.42 13.97 55.49 0.78 -25.65 16 25 Si 0.86 21.64 27.74 -169.99 -4.71 16.92 16 26 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 28 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 29 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.56 7.75 -51.93 -0.40 0.15 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.41 3.04 8.17 -40.82 -0.33 2.70 16 39 H 0.23 -0.15 8.06 -52.48 -0.42 -0.57 16 40 H 0.40 3.53 8.60 -40.82 -0.35 3.18 16 41 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.10 1.70 8.14 -51.91 -0.42 1.27 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 387.26 15.07 5.84 5.84 Total: -1.00 -40.18 387.26 -9.76 -49.94 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.41 Total: -0.80 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -2.29 Total: 0.84 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.64 Total: -49.01 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.18 Total: -18.18 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.92 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -40.18 -9.76 -49.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735017597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.908 kcal (2) G-P(sol) polarization free energy of solvation -40.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds