Wall clock time and date at job start Sat Apr 11 2020 06:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.46840 * 180.02562 * 6 5 4 8 8 C 1.34779 * 119.99872 * 179.97438 * 7 6 5 9 9 O 1.21553 * 119.99965 * 359.97438 * 8 7 6 10 10 C 1.47870 * 120.00001 * 179.97438 * 8 7 6 11 11 N 1.34551 * 126.04902 * 179.97438 * 10 8 7 12 12 C 1.30866 * 107.26854 * 179.97438 * 11 10 8 13 13 N 1.34587 * 107.62875 * 0.02562 * 12 11 10 14 14 H 0.96996 * 125.75129 * 179.97438 * 13 12 11 15 15 N 1.28853 * 108.50294 * 359.72997 * 13 12 11 16 16 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 17 17 C 1.34773 * 120.00306 * 84.99801 * 16 2 1 18 18 O 1.21292 * 119.99815 * 0.02562 * 17 16 2 19 19 C 1.50694 * 120.00409 * 179.97438 * 17 16 2 20 20 S 1.81002 * 109.47414 * 179.97438 * 19 17 16 21 21 C 1.76203 * 100.00112 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99904 * 0.02562 * 21 20 19 23 23 C 1.38795 * 119.99925 * 180.02562 * 21 20 19 24 24 N 1.31636 * 120.00258 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00209 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47058 * 90.00181 * 25 23 21 27 27 H 1.48501 * 109.47242 * 210.00255 * 25 23 21 28 28 H 1.48494 * 109.47103 * 330.00191 * 25 23 21 29 29 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 30 30 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 31 31 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 33 33 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 37 37 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 38 38 H 0.97005 * 120.00448 * 359.97438 * 7 6 5 39 39 H 1.08003 * 126.18876 * 179.97438 * 12 11 10 40 40 H 0.97003 * 120.00235 * 265.00555 * 16 2 1 41 41 H 1.08997 * 109.47334 * 300.00478 * 19 17 16 42 42 H 1.09008 * 109.47061 * 60.00564 * 19 17 16 43 43 H 0.96991 * 120.00114 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 6 4.0749 -1.3354 2.5623 7 7 5.5348 -1.2316 2.6243 8 6 6.2079 -1.7968 3.6461 9 8 5.6034 -2.3923 4.5164 10 6 7.6816 -1.6924 3.7084 11 7 8.4719 -2.2073 4.6679 12 6 9.7063 -1.8993 4.3611 13 7 9.6778 -1.1951 3.2145 14 1 10.4501 -0.8348 2.7514 15 7 8.4520 -1.0846 2.8329 16 7 2.0183 -0.6905 -1.1963 17 6 2.1470 -0.0181 -2.3572 18 8 1.8589 1.1589 -2.4114 19 6 2.6498 -0.7281 -3.5876 20 16 2.7098 0.4348 -4.9733 21 6 3.3130 -0.6303 -6.2407 22 1 3.5224 -1.6667 -6.0208 23 6 3.5189 -0.1373 -7.5217 24 7 3.9691 -0.9330 -8.4688 25 14 3.1560 1.6552 -7.9023 26 1 4.3746 2.4689 -7.6614 27 1 2.7461 1.7863 -9.3236 28 1 2.0587 2.1352 -7.0245 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7716 1.2053 33 1 1.6054 -0.2620 2.1368 34 1 3.8532 0.4368 1.3572 35 1 3.9994 -1.0729 0.4257 36 1 3.6403 -0.8764 3.4503 37 1 3.7865 -2.3856 2.5181 38 1 6.0172 -0.7560 1.9299 39 1 10.5884 -2.1619 4.9263 40 1 2.2489 -1.6317 -1.1529 41 1 3.6491 -1.1200 -3.3981 42 1 1.9775 -1.5504 -3.8328 43 1 4.1134 -0.5884 -9.3639 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001735017597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:05 Heat of formation + Delta-G solvation = -31.503862 kcal Electronic energy + Delta-G solvation = -25644.521641 eV Core-core repulsion = 21658.146794 eV Total energy + Delta-G solvation = -3986.374847 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.48913 -40.84818 -40.56752 -37.81741 -36.17255 -34.66977 -34.46795 -33.72235 -32.67638 -31.63632 -29.94225 -27.84494 -27.60141 -25.28950 -23.88496 -22.94752 -22.36985 -21.60880 -21.38039 -19.88101 -19.86216 -18.41543 -17.96289 -17.52779 -17.44990 -17.10162 -16.86192 -16.52489 -16.38987 -15.83347 -15.80930 -15.20192 -15.11662 -14.93058 -14.70801 -14.64608 -14.12253 -13.61480 -13.38895 -13.31746 -13.26181 -13.13605 -12.99643 -12.63528 -12.49015 -12.32650 -11.91213 -11.82968 -11.80897 -11.68150 -11.60043 -11.40440 -11.16861 -10.90893 -10.82803 -10.52182 -10.21399 -10.06898 -8.98375 -8.51330 -6.21663 0.22097 1.00845 1.12756 1.31168 1.47443 1.57535 1.61586 1.62863 2.01405 2.20898 2.24364 2.31856 2.73759 2.86859 3.17741 3.50717 3.62462 3.93048 4.00336 4.04258 4.07204 4.25960 4.29679 4.44706 4.49222 4.54325 4.70754 4.74457 4.85219 4.87666 4.92528 5.07589 5.20310 5.22658 5.23509 5.35942 5.40018 5.61578 5.71004 5.90497 6.11770 6.27863 6.54962 6.89262 6.93987 7.05417 7.27465 8.61062 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010603 B = 0.002064 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.170910 B =13563.612513 C =15656.950813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.070 0.930 4 C -0.111 4.111 5 C -0.126 4.126 6 C 0.122 3.878 7 N -0.701 5.701 8 C 0.609 3.391 9 O -0.555 6.555 10 C 0.120 3.880 11 N -0.515 5.515 12 C 0.220 3.780 13 N -0.380 5.380 14 H 0.473 0.527 15 N -0.279 5.279 16 N -0.707 5.707 17 C 0.536 3.464 18 O -0.563 6.563 19 C -0.113 4.113 20 S -0.176 6.176 21 C -0.528 4.528 22 H 0.062 0.938 23 C 0.044 3.956 24 N -0.918 5.918 25 Si 0.915 3.085 26 H -0.262 1.262 27 H -0.260 1.260 28 H -0.237 1.237 29 H 0.084 0.916 30 H 0.031 0.969 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.416 0.584 39 H 0.283 0.717 40 H 0.415 0.585 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.723 -1.178 28.004 29.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.164 4.164 6 C -0.001 4.001 7 N -0.354 5.354 8 C 0.391 3.609 9 O -0.430 6.430 10 C -0.160 4.160 11 N -0.241 5.241 12 C -0.077 4.077 13 N -0.105 5.105 14 H 0.324 0.676 15 N -0.122 5.122 16 N -0.360 5.360 17 C 0.322 3.678 18 O -0.442 6.442 19 C -0.264 4.264 20 S 0.050 5.950 21 C -0.676 4.676 22 H 0.080 0.920 23 C -0.161 4.161 24 N -0.556 5.556 25 Si 0.737 3.263 26 H -0.186 1.186 27 H -0.184 1.184 28 H -0.161 1.161 29 H 0.102 0.898 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.253 0.747 39 H 0.299 0.701 40 H 0.252 0.748 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.329 0.369 28.174 29.114 hybrid contribution 1.489 -0.986 -1.266 2.189 sum 8.818 -0.617 26.908 28.323 Atomic orbital electron populations 1.22155 0.94837 1.02869 1.02100 1.21061 0.94325 0.97043 0.83797 0.91220 1.21742 0.94015 1.02527 0.96670 1.21759 0.96606 1.01308 0.96756 1.21533 0.77493 1.01711 0.99323 1.45762 1.08864 1.55251 1.25492 1.16552 0.83260 0.78958 0.82092 1.90802 1.68681 1.43577 1.39940 1.23696 0.96400 1.03298 0.92617 1.71260 1.01951 1.23912 1.26935 1.27679 0.98328 0.93305 0.88416 1.45194 1.06715 1.38864 1.19762 0.67594 1.74191 0.92301 1.21352 1.24371 1.45903 1.67145 1.14572 1.08429 1.19889 0.76816 0.86564 0.84551 1.90690 1.50858 1.17506 1.85131 1.23292 1.06090 1.02218 0.94759 1.84706 1.86981 1.18726 1.04552 1.22470 1.50014 0.98269 0.96800 0.92009 1.25579 0.93304 1.02280 0.94955 1.70018 1.44603 1.37717 1.03222 0.85858 0.81001 0.79979 0.79477 1.18634 1.18449 1.16096 0.89763 0.94983 0.91067 0.89080 0.88103 0.90981 0.90862 0.90854 0.90853 0.74719 0.70141 0.74823 0.86915 0.87125 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.48 71.98 0.68 -2.12 16 2 C 0.14 2.48 2.57 44.99 0.12 2.59 16 3 H 0.07 1.55 7.58 -2.39 -0.02 1.53 16 4 C -0.11 -1.12 4.75 30.59 0.15 -0.97 16 5 C -0.13 -1.45 5.22 30.59 0.16 -1.29 16 6 C 0.12 1.68 5.67 86.38 0.49 2.17 16 7 N -0.70 -11.88 5.55 -465.95 -2.59 -14.47 16 8 C 0.61 14.40 7.83 86.79 0.68 15.08 16 9 O -0.55 -17.11 17.09 -3.88 -0.07 -17.18 16 10 C 0.12 2.53 7.96 137.12 1.09 3.62 16 11 N -0.52 -10.20 11.41 -193.02 -2.20 -12.40 16 12 C 0.22 1.56 13.14 180.30 2.37 3.93 16 13 N -0.38 -2.41 6.93 -60.38 -0.42 -2.83 16 14 H 0.47 -1.28 8.96 -219.80 -1.97 -3.25 16 15 N -0.28 -4.28 11.98 -52.43 -0.63 -4.91 16 16 N -0.71 -14.71 4.53 -442.55 -2.00 -16.71 16 17 C 0.54 17.37 7.81 87.66 0.68 18.06 16 18 O -0.56 -23.14 15.53 -3.07 -0.05 -23.19 16 19 C -0.11 -4.10 6.16 71.23 0.44 -3.66 16 20 S -0.18 -8.78 18.55 -56.49 -1.05 -9.82 16 21 C -0.53 -30.49 10.04 67.95 0.68 -29.80 16 22 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 23 C 0.04 2.58 5.50 84.86 0.47 3.04 16 24 N -0.92 -55.64 13.97 21.65 0.30 -55.33 16 25 Si 0.91 44.76 27.74 68.60 1.90 46.66 16 26 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 27 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 28 H -0.24 -11.59 6.74 99.48 0.67 -10.92 16 29 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 0.90 7.75 -2.39 -0.02 0.88 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.42 5.89 8.17 -92.70 -0.76 5.13 16 39 H 0.28 -1.50 8.06 -2.91 -0.02 -1.52 16 40 H 0.41 6.10 8.60 -92.71 -0.80 5.31 16 41 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 42 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 43 H 0.28 15.50 8.31 -92.72 -0.77 14.73 16 Total: -1.00 -90.99 387.26 -1.28 -92.27 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -2.49 Total: 7.24 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 8.01 Total: 10.66 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -7.54 Total: -106.65 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -0.11 Total: -40.36 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.90 Total: 46.66 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.05 Total: -9.82 kcal Total: -90.99 -1.28 -92.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735017597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.767 kcal (2) G-P(sol) polarization free energy of solvation -90.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds