Wall clock time and date at job start Sat Apr 11 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47166 * 2 1 4 4 C 1.52995 * 109.47224 * 239.99409 * 2 1 3 5 5 N 1.46499 * 109.46893 * 184.99937 * 4 2 1 6 6 C 1.46498 * 120.00412 * 269.99924 * 5 4 2 7 7 C 1.34781 * 119.99704 * 90.00487 * 5 4 2 8 8 O 1.21551 * 119.99835 * 356.54768 * 7 5 4 9 9 C 1.47867 * 119.99887 * 176.55222 * 7 5 4 10 10 N 1.34552 * 126.05107 * 5.86745 * 9 7 5 11 11 C 1.30871 * 107.27245 * 180.02562 * 10 9 7 12 12 N 1.34582 * 107.62170 * 0.02562 * 11 10 9 13 13 C 1.46503 * 125.74732 * 179.97438 * 12 11 10 14 14 N 1.28849 * 108.50957 * 359.73213 * 12 11 10 15 15 N 1.46498 * 109.46882 * 119.99467 * 2 1 3 16 16 C 1.34783 * 120.00029 * 275.00037 * 15 2 1 17 17 O 1.21280 * 119.99861 * 359.97438 * 16 15 2 18 18 C 1.50700 * 119.99825 * 179.97438 * 16 15 2 19 19 S 1.81005 * 109.46774 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99707 * 180.02562 * 19 18 16 21 21 H 1.08003 * 120.00241 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99872 * 180.02562 * 20 19 18 23 23 N 1.31627 * 119.99899 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99998 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47029 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47033 * 119.99808 * 24 22 20 27 27 H 1.48499 * 109.47177 * 240.00234 * 24 22 20 28 28 H 1.09004 * 109.46893 * 60.00283 * 1 2 3 29 29 H 1.08995 * 109.47274 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47326 * 300.01169 * 1 2 3 31 31 H 1.08999 * 109.47091 * 65.00320 * 4 2 1 32 32 H 1.08993 * 109.47163 * 305.00437 * 4 2 1 33 33 H 1.09002 * 109.46930 * 95.64780 * 6 5 4 34 34 H 1.08998 * 109.47530 * 215.64930 * 6 5 4 35 35 H 1.09001 * 109.47133 * 335.64975 * 6 5 4 36 36 H 1.07997 * 126.18869 * 180.02562 * 11 10 9 37 37 H 1.08994 * 109.47261 * 89.99712 * 13 12 11 38 38 H 1.08998 * 109.47403 * 210.00640 * 13 12 11 39 39 H 1.09001 * 109.46985 * 330.00337 * 13 12 11 40 40 H 0.96999 * 120.00112 * 94.99948 * 15 2 1 41 41 H 1.08997 * 109.47309 * 300.00018 * 18 16 15 42 42 H 1.08995 * 109.47193 * 60.00412 * 18 16 15 43 43 H 0.97002 * 119.99898 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5000 -0.8264 -1.1904 6 6 4.3344 0.2339 -1.7611 7 6 4.0757 -1.8987 -0.6113 8 8 3.3851 -2.7477 -0.0824 9 6 5.5474 -2.0423 -0.6193 10 7 6.4295 -1.1304 -1.0674 11 6 7.6262 -1.6338 -0.9027 12 7 7.4829 -2.8544 -0.3544 13 6 8.5727 -3.7683 -0.0030 14 7 6.2259 -3.0820 -0.1857 15 7 2.0183 -0.6905 1.1962 16 6 2.1470 -0.0180 2.3572 17 8 1.8590 1.1588 2.4114 18 6 2.6487 -0.7285 3.5879 19 16 2.7089 0.4346 4.9735 20 6 3.3122 -0.6305 6.2409 21 1 3.5215 -1.6670 6.0210 22 6 3.5174 -0.1378 7.5222 23 7 3.2608 1.1251 7.7905 24 14 4.1562 -1.2671 8.8660 25 1 4.3624 -2.6292 8.3114 26 1 5.4457 -0.7420 9.3824 27 1 3.1679 -1.3282 9.9726 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 1.7517 -0.1585 -2.1369 32 1 1.6054 -1.7198 -1.2950 33 1 4.6231 0.9317 -0.9751 34 1 5.2285 -0.2056 -2.2033 35 1 3.7723 0.7646 -2.5296 36 1 8.5599 -1.1561 -1.1603 37 1 8.8894 -3.5787 1.0225 38 1 8.2265 -4.7979 -0.0921 39 1 9.4132 -3.6079 -0.6783 40 1 2.2489 -1.6317 1.1528 41 1 1.9758 -1.5502 3.8327 42 1 3.6478 -1.1210 3.3988 43 1 3.4046 1.4695 8.6858 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735188678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:07 Heat of formation + Delta-G solvation = 39.274228 kcal Electronic energy + Delta-G solvation = -27608.270411 eV Core-core repulsion = 23624.964732 eV Total energy + Delta-G solvation = -3983.305678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.73972 -40.22883 -38.78695 -36.31945 -35.17998 -34.28122 -32.35933 -32.05040 -31.34562 -28.76131 -28.31947 -27.36513 -26.29527 -25.40824 -23.72733 -22.61811 -21.57856 -20.08708 -19.91255 -17.95462 -17.70649 -17.15232 -16.81208 -16.65952 -16.18278 -16.05585 -15.32884 -14.85539 -14.74430 -14.66952 -14.07066 -13.92389 -13.74009 -13.70803 -13.29997 -13.05096 -12.99592 -12.91181 -12.62951 -12.42990 -12.20495 -11.92228 -11.79892 -11.65039 -11.09304 -11.01742 -10.93615 -10.72999 -10.69237 -10.56037 -10.28103 -9.85402 -9.72465 -9.21375 -9.01028 -8.89975 -8.60144 -8.13315 -6.40517 -6.14932 -3.83803 1.13576 1.78069 1.86259 2.65749 3.11811 3.18326 3.25239 3.29685 3.32840 3.41528 3.74679 3.90630 4.00307 4.27532 4.30968 4.57293 4.67495 4.74371 4.87578 4.95695 5.04579 5.19973 5.24611 5.30403 5.40403 5.50041 5.55302 5.65327 5.69839 5.82600 5.84198 6.02511 6.05185 6.08259 6.14224 6.27104 6.32002 6.39374 6.90544 7.03746 7.62716 7.67476 7.90655 8.06215 8.43322 8.83976 9.30564 10.92660 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.008930 B = 0.003601 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3134.856681 B = 7773.913136 C =10145.557789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 H 0.089 0.911 4 C 0.109 3.891 5 N -0.593 5.593 6 C 0.070 3.930 7 C 0.620 3.380 8 O -0.520 6.520 9 C 0.145 3.855 10 N -0.480 5.480 11 C 0.189 3.811 12 N -0.303 5.303 13 C 0.084 3.916 14 N -0.248 5.248 15 N -0.731 5.731 16 C 0.533 3.467 17 O -0.524 6.524 18 C -0.151 4.151 19 S -0.061 6.061 20 C -0.532 4.532 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.869 5.869 24 Si 0.917 3.083 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.227 0.773 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.406 0.594 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.407 -7.608 -25.383 28.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.020 3.980 3 H 0.107 0.893 4 C -0.014 4.014 5 N -0.325 5.325 6 C -0.073 4.073 7 C 0.404 3.596 8 O -0.394 6.394 9 C -0.134 4.134 10 N -0.206 5.206 11 C -0.106 4.106 12 N -0.098 5.098 13 C -0.057 4.057 14 N -0.087 5.087 15 N -0.390 5.390 16 C 0.319 3.681 17 O -0.399 6.399 18 C -0.301 4.301 19 S 0.166 5.834 20 C -0.681 4.681 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.205 1.205 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.123 0.877 35 H 0.085 0.915 36 H 0.243 0.757 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.246 0.754 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.174 -6.239 -24.759 26.809 hybrid contribution 1.410 -2.364 0.858 2.883 sum 9.585 -8.603 -23.900 27.150 Atomic orbital electron populations 1.22132 0.94720 1.02328 1.02862 1.21300 0.94350 0.97926 0.84447 0.89306 1.22004 0.78506 1.02867 0.98025 1.47470 1.06951 1.20714 1.57383 1.22328 0.96043 0.90218 0.98683 1.16290 0.83142 0.81631 0.78514 1.90732 1.62330 1.41994 1.44324 1.23559 0.96193 0.89322 1.04350 1.71421 0.98630 1.28712 1.21877 1.26641 0.99767 0.85326 0.98859 1.47396 1.05313 1.14982 1.42092 1.22297 0.85921 0.94015 1.03447 1.74368 0.90310 1.24946 1.19080 1.46366 1.68721 1.14977 1.08978 1.20254 0.76785 0.87142 0.83928 1.90663 1.48890 1.15731 1.84636 1.23505 1.03527 1.04694 0.98396 1.85285 1.86269 1.13103 0.98740 1.22938 1.50506 0.98234 0.96386 0.90973 1.24978 0.95206 0.95515 0.97879 1.70036 1.45868 1.13223 1.21304 0.86137 0.78479 0.80231 0.80787 1.19631 1.20629 1.20542 0.91799 0.92306 0.91266 0.88468 0.89053 0.92117 0.87722 0.91484 0.75688 0.88807 0.88100 0.87901 0.75429 0.89356 0.89747 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.48 37.16 0.35 -1.55 16 2 C 0.13 1.68 2.88 -67.93 -0.20 1.48 16 3 H 0.09 1.31 7.58 -51.93 -0.39 0.91 16 4 C 0.11 1.11 5.18 -4.04 -0.02 1.09 16 5 N -0.59 -6.97 2.77 -182.69 -0.51 -7.48 16 6 C 0.07 0.67 9.67 59.85 0.58 1.25 16 7 C 0.62 9.00 7.06 -12.32 -0.09 8.91 16 8 O -0.52 -8.70 14.22 5.32 0.08 -8.63 16 9 C 0.15 1.99 7.65 -156.35 -1.20 0.80 16 10 N -0.48 -5.32 7.87 -12.36 -0.10 -5.42 16 11 C 0.19 1.43 12.62 -90.48 -1.14 0.29 16 12 N -0.30 -2.62 3.72 -69.39 -0.26 -2.88 16 13 C 0.08 0.29 11.38 59.85 0.68 0.97 16 14 N -0.25 -3.30 12.09 32.08 0.39 -2.91 16 15 N -0.73 -12.38 4.48 -53.81 -0.24 -12.62 16 16 C 0.53 11.40 7.81 -10.98 -0.09 11.32 16 17 O -0.52 -12.75 15.52 5.56 0.09 -12.66 16 18 C -0.15 -3.51 6.16 36.01 0.22 -3.29 16 19 S -0.06 -1.76 20.57 -107.50 -2.21 -3.97 16 20 C -0.53 -16.03 9.50 30.94 0.29 -15.73 16 21 H 0.07 2.09 7.80 -52.48 -0.41 1.68 16 22 C 0.07 2.17 5.49 -17.43 -0.10 2.07 16 23 N -0.87 -27.02 13.22 55.49 0.73 -26.29 16 24 Si 0.92 22.24 29.55 -169.99 -5.02 17.21 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.10 0.66 7.86 -51.93 -0.41 0.26 16 32 H 0.09 0.95 7.47 -51.93 -0.39 0.56 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.00 5.27 -51.93 -0.27 0.72 16 35 H 0.07 0.46 7.83 -51.93 -0.41 0.05 16 36 H 0.23 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 40 H 0.41 6.88 5.67 -40.82 -0.23 6.65 16 41 H 0.09 1.95 8.14 -51.92 -0.42 1.53 16 42 H 0.08 1.92 8.14 -51.92 -0.42 1.50 16 43 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 379.34 15.07 5.72 5.72 Total: -1.00 -41.10 379.34 -7.91 -49.00 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.87 Total: 3.31 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -0.70 Total: 7.61 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 0.02 Total: -57.60 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: 0.16 Total: -21.29 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.21 Total: -3.97 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -41.10 -7.91 -49.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735188678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.278 kcal (2) G-P(sol) polarization free energy of solvation -41.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds