Wall clock time and date at job start Sat Apr 11 2020 06:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47307 * 2 1 4 4 N 1.28706 * 126.03369 * 274.46042 * 3 2 1 5 5 N 1.28514 * 110.63686 * 179.77991 * 4 3 2 6 6 C 1.33318 * 109.43883 * 0.39622 * 5 4 3 7 7 C 1.37009 * 106.37263 * 359.62141 * 6 5 4 8 8 C 1.47229 * 127.19100 * 180.20759 * 7 6 5 9 9 O 1.21618 * 120.00055 * 174.57011 * 8 7 6 10 10 N 1.34780 * 119.99676 * 354.57111 * 8 7 6 11 11 C 1.46501 * 119.99817 * 185.14213 * 10 8 7 12 12 H 1.09001 * 109.47198 * 324.99939 * 11 10 8 13 13 C 1.52998 * 109.47373 * 84.99725 * 11 10 8 14 14 C 1.52999 * 109.47165 * 205.00008 * 11 10 8 15 15 N 1.46491 * 109.47112 * 54.99871 * 14 11 10 16 16 C 1.34786 * 120.00074 * 180.02562 * 15 14 11 17 17 O 1.21277 * 119.99766 * 0.02562 * 16 15 14 18 18 C 1.50693 * 120.00081 * 180.02562 * 16 15 14 19 19 S 1.81001 * 109.47071 * 180.02562 * 18 16 15 20 20 C 1.76203 * 100.00206 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99478 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99951 * 179.97438 * 20 19 18 23 23 N 1.31623 * 120.00180 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99513 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47296 * 60.00273 * 24 22 20 26 26 H 1.48506 * 109.46774 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47358 * 299.99843 * 24 22 20 28 28 H 1.08994 * 109.47087 * 300.00517 * 1 2 3 29 29 H 1.09005 * 109.46348 * 60.00596 * 1 2 3 30 30 H 1.09000 * 109.47514 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47509 * 239.99345 * 2 1 3 32 32 H 1.09001 * 109.46886 * 119.99893 * 2 1 3 33 33 H 1.07999 * 126.81559 * 179.88278 * 6 5 4 34 34 H 0.96997 * 120.00245 * 5.13936 * 10 8 7 35 35 H 1.09007 * 109.47214 * 59.99868 * 13 11 10 36 36 H 1.08998 * 109.47675 * 180.02562 * 13 11 10 37 37 H 1.09004 * 109.47100 * 300.00150 * 13 11 10 38 38 H 1.09000 * 109.46948 * 175.00198 * 14 11 10 39 39 H 1.08999 * 109.46942 * 294.99252 * 14 11 10 40 40 H 0.97001 * 120.00489 * 359.97438 * 15 14 11 41 41 H 1.09000 * 109.47458 * 299.99929 * 18 16 15 42 42 H 1.09007 * 109.47295 * 60.00230 * 18 16 15 43 43 H 0.97002 * 120.00105 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1945 2.1220 -1.0377 5 7 2.6282 3.2828 -0.6971 6 6 2.7621 3.3352 0.6283 7 6 2.3689 2.1123 1.1048 8 6 2.3312 1.6749 2.5101 9 8 1.8646 0.5890 2.7967 10 7 2.8138 2.4781 3.4789 11 6 2.8802 1.9991 4.8619 12 1 2.0278 1.3501 5.0629 13 6 4.1778 1.2153 5.0684 14 6 2.8482 3.1936 5.8174 15 7 1.6647 4.0106 5.5384 16 6 1.4280 5.1232 6.2615 17 8 2.1952 5.4481 7.1428 18 6 0.2103 5.9633 5.9748 19 16 0.1734 7.3773 7.1041 20 6 -1.3081 8.1627 6.5627 21 1 -1.8811 7.7352 5.7532 22 6 -1.7385 9.3309 7.1765 23 7 -1.0403 9.8516 8.1633 24 14 -3.3087 10.1638 6.6020 25 1 -4.4522 9.2306 6.7648 26 1 -3.5470 11.3844 7.4137 27 1 -3.1753 10.5385 5.1712 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.1076 4.1762 1.2111 34 1 3.1171 3.3731 3.2606 35 1 5.0302 1.8643 4.8674 36 1 4.2270 0.8586 6.0972 37 1 4.2006 0.3643 4.3877 38 1 2.8080 2.8351 6.8459 39 1 3.7463 3.7951 5.6772 40 1 1.0517 3.7514 4.8327 41 1 0.2498 6.3213 4.9461 42 1 -0.6877 5.3616 6.1159 43 1 -1.3414 10.6678 8.5925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738587531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:30 Heat of formation + Delta-G solvation = 19.801365 kcal Electronic energy + Delta-G solvation = -26638.927275 eV Core-core repulsion = 22654.777190 eV Total energy + Delta-G solvation = -3984.150085 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.72989 -40.36588 -39.17439 -36.83667 -35.80115 -33.91816 -32.54210 -32.45330 -31.25145 -30.83311 -29.45419 -26.19205 -25.50269 -25.29722 -24.30267 -22.90203 -21.36587 -20.98555 -20.44552 -18.73273 -17.86208 -17.42320 -16.90105 -16.83193 -16.34861 -15.97477 -15.54018 -15.26974 -15.12329 -14.82633 -14.68889 -14.36809 -14.11775 -13.60550 -13.45077 -13.27176 -13.05153 -13.01822 -12.76960 -12.64469 -12.46437 -12.37234 -12.09656 -11.88273 -11.45900 -11.39463 -11.07483 -11.05545 -10.79197 -10.69870 -10.59058 -10.00010 -9.86123 -9.71285 -9.50671 -9.10728 -9.04410 -8.28669 -6.53825 -6.24261 -3.95392 0.46864 1.60250 1.89149 2.50781 2.57172 2.94379 2.99258 3.22200 3.25822 3.28648 3.61844 3.81396 3.95933 4.17945 4.23240 4.24027 4.34292 4.48621 4.66049 4.67036 4.79541 4.90575 5.04410 5.06305 5.11042 5.19357 5.23399 5.32161 5.41481 5.50995 5.52413 5.55589 5.65289 5.76364 5.81879 5.88703 5.95994 6.08252 6.43218 6.79031 7.46789 7.54128 7.57174 7.93867 8.32352 8.48697 9.21160 10.83076 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011864 B = 0.002394 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.510653 B =11691.157990 C =13169.641547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 N -0.251 5.251 4 N -0.056 5.056 5 N -0.272 5.272 6 C 0.006 3.994 7 C -0.075 4.075 8 C 0.601 3.399 9 O -0.532 6.532 10 N -0.709 5.709 11 C 0.133 3.867 12 H 0.102 0.898 13 C -0.162 4.162 14 C 0.112 3.888 15 N -0.741 5.741 16 C 0.533 3.467 17 O -0.514 6.514 18 C -0.155 4.155 19 S -0.059 6.059 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.199 0.801 34 H 0.408 0.592 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.483 -22.388 -14.180 27.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.016 4.016 3 N -0.048 5.048 4 N -0.037 5.037 5 N -0.134 5.134 6 C -0.155 4.155 7 C -0.210 4.210 8 C 0.385 3.615 9 O -0.408 6.408 10 N -0.361 5.361 11 C 0.029 3.971 12 H 0.120 0.880 13 C -0.220 4.220 14 C -0.012 4.012 15 N -0.397 5.397 16 C 0.319 3.681 17 O -0.388 6.388 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.140 0.860 33 H 0.216 0.784 34 H 0.244 0.756 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.361 -22.443 -13.876 27.998 hybrid contribution -2.001 0.362 -0.724 2.159 sum 7.359 -22.081 -14.599 27.475 Atomic orbital electron populations 1.22097 0.92386 1.04208 1.03610 1.22439 0.97050 0.75530 1.06614 1.47933 1.39715 1.13656 1.03532 1.78297 1.15596 0.98088 1.11707 1.74954 1.15236 1.10650 1.12537 1.23971 1.02360 0.96982 0.92188 1.21898 1.13195 0.94850 0.91020 1.16654 0.77802 0.84419 0.82627 1.90812 1.45523 1.21582 1.82915 1.45797 1.64522 1.18136 1.07690 1.21370 1.00662 0.95954 0.79075 0.88041 1.22127 0.96306 1.00465 1.03146 1.21624 0.89539 0.90990 0.99077 1.46011 1.27357 1.26878 1.39470 1.20327 0.86802 0.80027 0.80921 1.90715 1.47635 1.69755 1.30681 1.23537 0.97583 1.02922 1.06473 1.85385 1.33673 1.20760 1.43382 1.22820 1.10199 1.12673 1.22817 0.90981 1.24985 0.97822 0.96096 0.94617 1.69999 1.38129 1.20344 1.21795 0.86227 0.81913 0.78608 0.78779 1.19944 1.20788 1.19898 0.91255 0.91422 0.89409 0.87538 0.85997 0.78414 0.75637 0.91684 0.90609 0.91676 0.89596 0.90628 0.76740 0.89195 0.89226 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 10.24 37.16 0.38 -0.56 16 2 C 0.10 0.64 6.68 -4.04 -0.03 0.61 16 3 N -0.25 -2.27 3.39 -57.37 -0.19 -2.46 16 4 N -0.06 -0.62 13.14 60.35 0.79 0.17 16 5 N -0.27 -3.12 12.35 30.47 0.38 -2.74 16 6 C 0.01 0.05 11.54 -17.35 -0.20 -0.15 16 7 C -0.08 -0.65 6.98 -82.33 -0.57 -1.23 16 8 C 0.60 4.91 7.76 -12.61 -0.10 4.81 16 9 O -0.53 -5.41 14.46 5.26 0.08 -5.34 16 10 N -0.71 -4.43 4.51 -54.94 -0.25 -4.68 16 11 C 0.13 0.88 2.78 -67.93 -0.19 0.70 16 12 H 0.10 0.77 7.51 -51.93 -0.39 0.38 16 13 C -0.16 -0.91 9.48 37.16 0.35 -0.56 16 14 C 0.11 0.98 5.23 -4.05 -0.02 0.96 16 15 N -0.74 -8.29 5.39 -60.30 -0.32 -8.61 16 16 C 0.53 9.03 7.85 -10.98 -0.09 8.95 16 17 O -0.51 -10.79 15.86 5.56 0.09 -10.70 16 18 C -0.15 -2.95 6.16 36.00 0.22 -2.73 16 19 S -0.06 -1.54 20.57 -107.50 -2.21 -3.76 16 20 C -0.54 -15.04 9.50 30.94 0.29 -14.75 16 21 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 24 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.12 0.76 6.33 -51.93 -0.33 0.43 16 33 H 0.20 1.00 7.56 -52.49 -0.40 0.61 16 34 H 0.41 1.98 7.64 -40.82 -0.31 1.67 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.40 3.68 8.14 -40.82 -0.33 3.34 16 41 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 42 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 386.31 15.07 5.82 5.82 Total: -1.00 -36.72 386.31 -6.11 -42.83 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.95 Total: 0.35 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -0.04 Total: -1.95 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 1.14 Total: -43.43 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: 0.16 Total: -16.04 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.72 -6.11 -42.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738587531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.633 kcal (2) G-P(sol) polarization free energy of solvation -36.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds