Wall clock time and date at job start Sat Apr 11 2020 06:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47307 * 2 1 4 4 N 1.28706 * 126.03369 * 274.46042 * 3 2 1 5 5 N 1.28514 * 110.63686 * 179.77991 * 4 3 2 6 6 C 1.33318 * 109.43883 * 0.39622 * 5 4 3 7 7 C 1.37009 * 106.37263 * 359.62141 * 6 5 4 8 8 C 1.47229 * 127.19100 * 180.20759 * 7 6 5 9 9 O 1.21618 * 120.00055 * 174.57011 * 8 7 6 10 10 N 1.34780 * 119.99676 * 354.57111 * 8 7 6 11 11 C 1.46501 * 119.99817 * 185.14213 * 10 8 7 12 12 H 1.09001 * 109.47198 * 324.99939 * 11 10 8 13 13 C 1.52998 * 109.47373 * 84.99725 * 11 10 8 14 14 C 1.52999 * 109.47165 * 205.00008 * 11 10 8 15 15 N 1.46491 * 109.47112 * 54.99871 * 14 11 10 16 16 C 1.34786 * 120.00074 * 180.02562 * 15 14 11 17 17 O 1.21277 * 119.99766 * 0.02562 * 16 15 14 18 18 C 1.50693 * 120.00081 * 180.02562 * 16 15 14 19 19 S 1.81001 * 109.47071 * 180.02562 * 18 16 15 20 20 C 1.76203 * 100.00206 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99478 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99951 * 179.97438 * 20 19 18 23 23 N 1.31623 * 120.00180 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99513 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47296 * 60.00273 * 24 22 20 26 26 H 1.48506 * 109.46774 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47358 * 299.99843 * 24 22 20 28 28 H 1.08994 * 109.47087 * 300.00517 * 1 2 3 29 29 H 1.09005 * 109.46348 * 60.00596 * 1 2 3 30 30 H 1.09000 * 109.47514 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47509 * 239.99345 * 2 1 3 32 32 H 1.09001 * 109.46886 * 119.99893 * 2 1 3 33 33 H 1.07999 * 126.81559 * 179.88278 * 6 5 4 34 34 H 0.96997 * 120.00245 * 5.13936 * 10 8 7 35 35 H 1.09007 * 109.47214 * 59.99868 * 13 11 10 36 36 H 1.08998 * 109.47675 * 180.02562 * 13 11 10 37 37 H 1.09004 * 109.47100 * 300.00150 * 13 11 10 38 38 H 1.09000 * 109.46948 * 175.00198 * 14 11 10 39 39 H 1.08999 * 109.46942 * 294.99252 * 14 11 10 40 40 H 0.97001 * 120.00489 * 359.97438 * 15 14 11 41 41 H 1.09000 * 109.47458 * 299.99929 * 18 16 15 42 42 H 1.09007 * 109.47295 * 60.00230 * 18 16 15 43 43 H 0.97002 * 120.00105 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1945 2.1220 -1.0377 5 7 2.6282 3.2828 -0.6971 6 6 2.7621 3.3352 0.6283 7 6 2.3689 2.1123 1.1048 8 6 2.3312 1.6749 2.5101 9 8 1.8646 0.5890 2.7967 10 7 2.8138 2.4781 3.4789 11 6 2.8802 1.9991 4.8619 12 1 2.0278 1.3501 5.0629 13 6 4.1778 1.2153 5.0684 14 6 2.8482 3.1936 5.8174 15 7 1.6647 4.0106 5.5384 16 6 1.4280 5.1232 6.2615 17 8 2.1952 5.4481 7.1428 18 6 0.2103 5.9633 5.9748 19 16 0.1734 7.3773 7.1041 20 6 -1.3081 8.1627 6.5627 21 1 -1.8811 7.7352 5.7532 22 6 -1.7385 9.3309 7.1765 23 7 -1.0403 9.8516 8.1633 24 14 -3.3087 10.1638 6.6020 25 1 -4.4522 9.2306 6.7648 26 1 -3.5470 11.3844 7.4137 27 1 -3.1753 10.5385 5.1712 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.1076 4.1762 1.2111 34 1 3.1171 3.3731 3.2606 35 1 5.0302 1.8643 4.8674 36 1 4.2270 0.8586 6.0972 37 1 4.2006 0.3643 4.3877 38 1 2.8080 2.8351 6.8459 39 1 3.7463 3.7951 5.6772 40 1 1.0517 3.7514 4.8327 41 1 0.2498 6.3213 4.9461 42 1 -0.6877 5.3616 6.1159 43 1 -1.3414 10.6678 8.5925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738587531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:30 Heat of formation + Delta-G solvation = -8.760895 kcal Electronic energy + Delta-G solvation = -26640.165828 eV Core-core repulsion = 22654.777190 eV Total energy + Delta-G solvation = -3985.388637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.41948 -41.12936 -40.35566 -37.62729 -36.43552 -34.90037 -34.57236 -33.29646 -31.83657 -31.60712 -30.69681 -27.72671 -26.85609 -25.99774 -24.93236 -23.55771 -22.02237 -21.71172 -21.61953 -19.88211 -19.26879 -18.07824 -17.81540 -17.61068 -17.52353 -16.96802 -16.86632 -16.44488 -16.07306 -15.89150 -15.81322 -15.34380 -14.94673 -14.80887 -14.53396 -14.22156 -13.97701 -13.84257 -13.71446 -13.25331 -13.21309 -13.19649 -13.15966 -12.95169 -12.86366 -12.64986 -12.61317 -12.07049 -12.01495 -11.73156 -11.37569 -11.27237 -11.12332 -10.97271 -10.68509 -10.29777 -10.26445 -10.13702 -8.64518 -8.33928 -6.11134 -0.19430 1.01002 1.17774 1.27926 1.43866 1.47303 1.56925 1.62828 1.90075 1.93855 2.26211 2.31000 3.00277 3.22240 3.33011 3.37012 3.56545 3.64350 3.87559 3.91786 3.97546 4.08243 4.22315 4.24386 4.31706 4.33615 4.53658 4.59493 4.62736 4.70706 4.79447 4.80094 4.94866 4.96536 5.08405 5.25717 5.31206 5.34210 5.41932 5.42740 6.20313 6.22362 6.45168 6.86851 7.07801 7.22661 7.23214 8.74806 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011864 B = 0.002394 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.510653 B =11691.157990 C =13169.641547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 N -0.248 5.248 4 N -0.079 5.079 5 N -0.305 5.305 6 C 0.009 3.991 7 C -0.080 4.080 8 C 0.606 3.394 9 O -0.552 6.552 10 N -0.698 5.698 11 C 0.146 3.854 12 H 0.097 0.903 13 C -0.158 4.158 14 C 0.113 3.887 15 N -0.714 5.714 16 C 0.538 3.462 17 O -0.560 6.560 18 C -0.133 4.133 19 S -0.146 6.146 20 C -0.548 4.548 21 H 0.081 0.919 22 C 0.015 3.985 23 N -0.910 5.910 24 Si 0.995 3.005 25 H -0.263 1.263 26 H -0.279 1.279 27 H -0.263 1.263 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.229 0.771 34 H 0.417 0.583 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.412 0.588 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.961 -23.644 -15.388 29.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.022 4.022 3 N -0.046 5.046 4 N -0.059 5.059 5 N -0.167 5.167 6 C -0.152 4.152 7 C -0.215 4.215 8 C 0.391 3.609 9 O -0.430 6.430 10 N -0.351 5.351 11 C 0.042 3.958 12 H 0.115 0.885 13 C -0.216 4.216 14 C -0.010 4.010 15 N -0.369 5.369 16 C 0.324 3.676 17 O -0.437 6.437 18 C -0.284 4.284 19 S 0.081 5.919 20 C -0.695 4.695 21 H 0.099 0.901 22 C -0.190 4.190 23 N -0.546 5.546 24 Si 0.817 3.183 25 H -0.188 1.188 26 H -0.204 1.204 27 H -0.187 1.187 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.245 0.755 34 H 0.255 0.745 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.249 0.751 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.844 -23.739 -15.136 29.510 hybrid contribution -1.777 0.598 -0.371 1.911 sum 7.067 -23.142 -15.507 28.739 Atomic orbital electron populations 1.22066 0.91976 1.05317 1.02339 1.22693 0.97337 0.74490 1.07632 1.48214 1.38846 1.14265 1.03315 1.78246 1.16682 0.98484 1.12534 1.74914 1.16425 1.11189 1.14125 1.24499 1.01444 0.97793 0.91456 1.22065 1.13229 0.94970 0.91188 1.16559 0.77598 0.84200 0.82558 1.90811 1.46581 1.22486 1.83093 1.45709 1.63791 1.18355 1.07225 1.21243 1.01286 0.94790 0.78501 0.88470 1.22095 0.95734 1.00167 1.03625 1.21783 0.88346 0.91223 0.99687 1.45717 1.28004 1.24941 1.38191 1.19927 0.85697 0.81049 0.80964 1.90710 1.48884 1.71232 1.32904 1.23394 0.99647 1.00248 1.05152 1.85521 1.34198 1.25131 1.47088 1.23169 1.10373 1.13049 1.22947 0.90076 1.26078 1.01547 0.96830 0.94563 1.70162 1.40240 1.20936 1.23301 0.85052 0.77240 0.77433 0.78588 1.18805 1.20420 1.18717 0.92995 0.92048 0.87151 0.85581 0.85901 0.75485 0.74549 0.90862 0.89727 0.92179 0.89748 0.90051 0.75144 0.87161 0.87651 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 10.24 71.98 0.74 -0.89 16 2 C 0.10 1.08 6.68 86.38 0.58 1.66 16 3 N -0.25 -4.24 3.39 -335.42 -1.14 -5.37 16 4 N -0.08 -1.72 13.14 37.02 0.49 -1.23 16 5 N -0.31 -6.78 12.35 -57.50 -0.71 -7.49 16 6 C 0.01 0.15 11.54 84.18 0.97 1.12 16 7 C -0.08 -1.25 6.98 40.41 0.28 -0.97 16 8 C 0.61 8.67 7.76 86.61 0.67 9.34 16 9 O -0.55 -10.25 14.46 -4.09 -0.06 -10.31 16 10 N -0.70 -6.89 4.51 -445.99 -2.01 -8.90 16 11 C 0.15 1.56 2.78 44.99 0.12 1.68 16 12 H 0.10 1.23 7.51 -2.39 -0.02 1.21 16 13 C -0.16 -1.38 9.48 71.98 0.68 -0.69 16 14 C 0.11 1.71 5.23 86.38 0.45 2.16 16 15 N -0.71 -14.21 5.39 -463.08 -2.50 -16.71 16 16 C 0.54 17.51 7.85 87.65 0.69 18.20 16 17 O -0.56 -23.40 15.86 -3.02 -0.05 -23.45 16 18 C -0.13 -4.92 6.16 71.23 0.44 -4.48 16 19 S -0.15 -7.86 20.57 -56.49 -1.16 -9.02 16 20 C -0.55 -30.68 9.50 67.95 0.65 -30.03 16 21 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 22 C 0.01 0.83 5.49 84.86 0.47 1.30 16 23 N -0.91 -55.16 13.22 21.65 0.29 -54.87 16 24 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 25 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 26 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.12 1.37 6.33 -2.39 -0.02 1.36 16 33 H 0.23 1.72 7.56 -2.91 -0.02 1.69 16 34 H 0.42 2.76 7.64 -92.71 -0.71 2.05 16 35 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.41 6.30 8.14 -92.71 -0.75 5.54 16 41 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 42 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 43 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -81.76 386.31 1.51 -80.25 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -0.40 Total: 13.57 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 6.74 Total: -1.61 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -5.58 Total: -94.57 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -0.11 Total: -33.76 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -7.86 SS G_CDS: -1.16 Total: -9.02 kcal Total: -81.76 1.51 -80.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738587531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.488 kcal (2) G-P(sol) polarization free energy of solvation -81.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds