Wall clock time and date at job start Sat Apr 11 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 120.00204 * 2 1 4 4 C 1.52996 * 109.47177 * 270.27505 * 3 2 1 5 5 C 1.52999 * 109.47253 * 179.97438 * 4 3 2 6 6 N 1.46494 * 109.47169 * 180.02562 * 5 4 3 7 7 C 1.34778 * 119.99764 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00424 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00056 * 179.97438 * 7 6 5 10 10 S 1.80996 * 109.47560 * 180.02562 * 9 7 6 11 11 C 1.76198 * 100.00124 * 180.02562 * 10 9 7 12 12 H 1.07996 * 120.00107 * 0.02562 * 11 10 9 13 13 C 1.38800 * 119.99655 * 180.02562 * 11 10 9 14 14 N 1.31630 * 120.00039 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00370 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47446 * 89.99902 * 15 13 11 17 17 H 1.48503 * 109.47328 * 210.00448 * 15 13 11 18 18 H 1.48504 * 109.46789 * 330.00078 * 15 13 11 19 19 C 1.34784 * 120.00073 * 180.27821 * 2 1 3 20 20 O 1.21553 * 120.00290 * 174.22782 * 19 2 1 21 21 C 1.47866 * 119.99687 * 354.22016 * 19 2 1 22 22 N 1.34556 * 126.05159 * 353.76547 * 21 19 2 23 23 C 1.30872 * 107.27052 * 179.97438 * 22 21 19 24 24 N 1.34581 * 107.62486 * 0.02562 * 23 22 21 25 25 C 1.46499 * 125.74941 * 179.97438 * 24 23 22 26 26 N 1.28847 * 108.50564 * 359.72974 * 24 23 22 27 27 H 1.08998 * 109.47539 * 265.05279 * 1 2 3 28 28 H 1.08997 * 109.47247 * 25.05648 * 1 2 3 29 29 H 1.09007 * 109.47163 * 145.05389 * 1 2 3 30 30 H 1.09002 * 109.46588 * 30.27439 * 3 2 1 31 31 H 1.09000 * 109.47004 * 150.27197 * 3 2 1 32 32 H 1.09001 * 109.47166 * 300.00029 * 4 3 2 33 33 H 1.09001 * 109.46706 * 59.99672 * 4 3 2 34 34 H 1.09001 * 109.47161 * 300.00158 * 5 4 3 35 35 H 1.09000 * 109.46863 * 59.99732 * 5 4 3 36 36 H 0.97000 * 120.00565 * 0.02562 * 6 5 4 37 37 H 1.09001 * 109.47108 * 300.00483 * 9 7 6 38 38 H 1.09007 * 109.46971 * 59.99991 * 9 7 6 39 39 H 0.96997 * 120.00682 * 179.97438 * 14 13 11 40 40 H 1.07992 * 126.18329 * 180.02562 * 23 22 21 41 41 H 1.08996 * 109.47065 * 89.99477 * 25 24 23 42 42 H 1.08998 * 109.47562 * 210.00245 * 25 24 23 43 43 H 1.09007 * 109.46807 * 329.99835 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4465 1.7139 -1.4424 5 6 3.2110 3.0392 -1.4425 6 7 3.4489 3.4657 -2.8236 7 6 4.1095 4.6144 -3.0698 8 8 4.5073 5.2947 -2.1480 9 6 4.3547 5.0529 -4.4906 10 16 5.2590 6.6208 -4.4906 11 6 5.4042 6.8903 -6.2258 12 1 4.9874 6.1756 -6.9200 13 6 6.0542 8.0211 -6.7005 14 7 6.1622 8.2227 -7.9968 15 14 6.7744 9.2576 -5.4998 16 1 8.1778 8.8855 -5.1882 17 1 6.7446 10.6125 -6.1070 18 1 5.9731 9.2579 -4.2495 19 6 2.1389 -1.1672 -0.0057 20 8 3.3498 -1.1694 -0.1115 21 6 1.4051 -2.4451 0.1171 22 7 0.0883 -2.5822 0.3575 23 6 -0.1688 -3.8650 0.3922 24 7 0.9874 -4.5184 0.1741 25 6 1.1532 -5.9733 0.1302 26 7 1.9230 -3.6488 0.0053 27 1 -0.3634 -0.0886 1.0238 28 1 -0.3633 0.9309 -0.4352 29 1 -0.3634 -0.8424 -0.5887 30 1 1.6105 2.0271 0.5181 31 1 3.1520 1.1371 0.5096 32 1 3.0334 0.9554 -1.9606 33 1 1.4920 1.8454 -1.9520 34 1 2.6237 3.7974 -0.9245 35 1 4.1655 2.9080 -0.9327 36 1 3.1304 2.9218 -3.5609 37 1 4.9424 4.2949 -5.0085 38 1 3.4001 5.1836 -5.0004 39 1 6.6161 9.0131 -8.3286 40 1 -1.1342 -4.3173 0.5646 41 1 1.0089 -6.3247 -0.8914 42 1 2.1565 -6.2350 0.4663 43 1 0.4173 -6.4427 0.7833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001743372263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:39 Heat of formation + Delta-G solvation = 33.241345 kcal Electronic energy + Delta-G solvation = -25567.339695 eV Core-core repulsion = 21583.772412 eV Total energy + Delta-G solvation = -3983.567284 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.97906 -40.08037 -39.17609 -36.51391 -35.36608 -34.77162 -32.40561 -32.28822 -32.03756 -29.49980 -28.43408 -27.19889 -25.94046 -25.53149 -23.78701 -22.78188 -21.89098 -20.51865 -19.97032 -18.12003 -17.82321 -17.36156 -17.00420 -16.83553 -16.34576 -15.86938 -15.67694 -15.54811 -15.18102 -14.90068 -14.57260 -14.07705 -13.95846 -13.87138 -13.71823 -13.27516 -13.18098 -13.03279 -12.77159 -12.70172 -12.55081 -12.18128 -11.86964 -11.80203 -11.22865 -11.06397 -10.97083 -10.96610 -10.81836 -10.57903 -10.49488 -10.09778 -9.82465 -9.50579 -9.04255 -8.97772 -8.89765 -8.45725 -6.87521 -6.25429 -3.96805 0.90644 1.56411 1.62297 2.45665 2.82747 2.93643 3.04409 3.35443 3.39002 3.52629 3.54185 3.71826 3.77059 4.08092 4.32399 4.36833 4.44119 4.63035 4.66671 4.71940 4.76379 4.89869 4.97632 5.13652 5.16917 5.26955 5.34419 5.37585 5.40959 5.58104 5.63911 5.77025 5.79914 5.87407 5.92807 5.97772 6.06889 6.16417 6.59318 6.85833 7.41658 7.67597 7.76569 7.97649 8.45251 8.55599 9.20876 10.83822 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.031494 B = 0.001518 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.838287 B =18435.710863 C =18748.864505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.598 5.598 3 C 0.122 3.878 4 C -0.148 4.148 5 C 0.125 3.875 6 N -0.736 5.736 7 C 0.530 3.470 8 O -0.520 6.520 9 C -0.124 4.124 10 S -0.142 6.142 11 C -0.521 4.521 12 H 0.088 0.912 13 C 0.096 3.904 14 N -0.881 5.881 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 C 0.612 3.388 20 O -0.512 6.512 21 C 0.144 3.856 22 N -0.481 5.481 23 C 0.188 3.812 24 N -0.304 5.304 25 C 0.084 3.916 26 N -0.251 5.251 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.399 0.601 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.270 0.730 40 H 0.227 0.773 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.134 -30.854 19.020 40.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.332 5.332 3 C -0.001 4.001 4 C -0.187 4.187 5 C 0.000 4.000 6 N -0.391 5.391 7 C 0.316 3.684 8 O -0.395 6.395 9 C -0.275 4.275 10 S 0.084 5.916 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.518 5.518 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.159 1.159 19 C 0.396 3.604 20 O -0.384 6.384 21 C -0.136 4.136 22 N -0.207 5.207 23 C -0.107 4.107 24 N -0.099 5.099 25 C -0.057 4.057 26 N -0.090 5.090 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.233 0.767 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.243 0.757 41 H 0.111 0.889 42 H 0.120 0.880 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.290 -29.444 20.289 39.718 hybrid contribution -0.667 -0.915 -1.229 1.671 sum -17.957 -30.359 19.059 40.092 Atomic orbital electron populations 1.22048 0.77719 1.03193 1.02974 1.47532 1.08026 1.04922 1.72682 1.21454 0.98238 0.83646 0.96733 1.22157 1.01290 0.97314 0.97901 1.21148 1.00256 0.94723 0.83853 1.45933 1.60113 1.24735 1.08306 1.20267 0.76861 0.80083 0.91185 1.90697 1.49357 1.53380 1.46050 1.23282 1.05103 1.03651 0.95445 1.84777 1.72990 1.22061 1.11748 1.22329 1.43235 1.12331 0.88996 0.89405 1.24711 0.94468 0.97039 0.95071 1.69938 1.41593 1.28128 1.12115 0.86730 0.81304 0.80913 0.82877 1.19205 1.19963 1.15912 1.16354 0.85643 0.81043 0.77383 1.90865 1.12821 1.86212 1.48533 1.23685 0.88956 0.93316 1.07593 1.71508 1.13376 1.15787 1.20031 1.26625 0.94050 0.88341 1.01693 1.47418 1.05818 1.08986 1.47694 1.22297 1.06162 0.72185 1.05033 1.74381 1.17228 0.98949 1.18459 0.91998 0.91289 0.89392 0.89380 0.89163 0.90526 0.90935 0.91416 0.91276 0.76671 0.88496 0.88475 0.91973 0.75686 0.88942 0.88037 0.87826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 9.29 59.84 0.56 1.10 16 2 N -0.60 -5.47 2.87 -182.69 -0.52 -6.00 16 3 C 0.12 1.03 5.34 -4.04 -0.02 1.01 16 4 C -0.15 -1.32 5.65 -26.73 -0.15 -1.47 16 5 C 0.12 1.43 5.67 -4.05 -0.02 1.41 16 6 N -0.74 -9.87 5.56 -60.30 -0.33 -10.21 16 7 C 0.53 9.79 7.85 -10.98 -0.09 9.70 16 8 O -0.52 -11.59 15.86 5.56 0.09 -11.50 16 9 C -0.12 -2.48 6.16 36.01 0.22 -2.26 16 10 S -0.14 -3.69 18.55 -107.50 -1.99 -5.68 16 11 C -0.52 -15.30 10.04 30.94 0.31 -14.99 16 12 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 13 C 0.10 2.84 5.50 -17.43 -0.10 2.75 16 14 N -0.88 -26.93 13.97 55.49 0.78 -26.16 16 15 Si 0.86 22.15 27.74 -169.99 -4.71 17.43 16 16 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.24 -6.07 6.74 56.52 0.38 -5.69 16 19 C 0.61 7.37 7.67 -12.32 -0.09 7.28 16 20 O -0.51 -7.91 16.72 5.32 0.09 -7.82 16 21 C 0.14 1.54 7.57 -156.35 -1.18 0.35 16 22 N -0.48 -3.74 8.14 -12.37 -0.10 -3.84 16 23 C 0.19 0.81 12.62 -90.48 -1.14 -0.33 16 24 N -0.30 -1.65 3.72 -69.40 -0.26 -1.91 16 25 C 0.08 0.02 11.38 59.85 0.68 0.71 16 26 N -0.25 -2.58 12.09 32.08 0.39 -2.20 16 27 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 28 H 0.07 0.34 8.03 -51.93 -0.42 -0.08 16 29 H 0.09 0.62 5.90 -51.93 -0.31 0.31 16 30 H 0.09 0.55 8.07 -51.93 -0.42 0.13 16 31 H 0.09 0.88 7.50 -51.93 -0.39 0.49 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.40 4.26 8.47 -40.82 -0.35 3.91 16 37 H 0.10 1.81 8.14 -51.91 -0.42 1.39 16 38 H 0.10 1.79 8.14 -51.91 -0.42 1.37 16 39 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 40 H 0.23 -0.22 8.06 -52.49 -0.42 -0.64 16 41 H 0.09 -0.08 8.14 -51.93 -0.42 -0.50 16 42 H 0.10 0.07 8.14 -51.93 -0.42 -0.36 16 43 H 0.10 -0.31 8.14 -51.92 -0.42 -0.73 16 LS Contribution 384.70 15.07 5.80 5.80 Total: -1.00 -41.26 384.70 -7.92 -49.18 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -6.11 Total: -2.34 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -1.03 Total: 5.25 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.06 Total: -50.31 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.18 Total: -19.32 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.43 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -41.26 -7.92 -49.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001743372263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.420 kcal (2) G-P(sol) polarization free energy of solvation -41.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds