Wall clock time and date at job start Sat Apr 11 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 120.00204 * 2 1 4 4 C 1.52996 * 109.47177 * 270.27505 * 3 2 1 5 5 C 1.52999 * 109.47253 * 179.97438 * 4 3 2 6 6 N 1.46494 * 109.47169 * 180.02562 * 5 4 3 7 7 C 1.34778 * 119.99764 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00424 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00056 * 179.97438 * 7 6 5 10 10 S 1.80996 * 109.47560 * 180.02562 * 9 7 6 11 11 C 1.76198 * 100.00124 * 180.02562 * 10 9 7 12 12 H 1.07996 * 120.00107 * 0.02562 * 11 10 9 13 13 C 1.38800 * 119.99655 * 180.02562 * 11 10 9 14 14 N 1.31630 * 120.00039 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00370 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47446 * 89.99902 * 15 13 11 17 17 H 1.48503 * 109.47328 * 210.00448 * 15 13 11 18 18 H 1.48504 * 109.46789 * 330.00078 * 15 13 11 19 19 C 1.34784 * 120.00073 * 180.27821 * 2 1 3 20 20 O 1.21553 * 120.00290 * 174.22782 * 19 2 1 21 21 C 1.47866 * 119.99687 * 354.22016 * 19 2 1 22 22 N 1.34556 * 126.05159 * 353.76547 * 21 19 2 23 23 C 1.30872 * 107.27052 * 179.97438 * 22 21 19 24 24 N 1.34581 * 107.62486 * 0.02562 * 23 22 21 25 25 C 1.46499 * 125.74941 * 179.97438 * 24 23 22 26 26 N 1.28847 * 108.50564 * 359.72974 * 24 23 22 27 27 H 1.08998 * 109.47539 * 265.05279 * 1 2 3 28 28 H 1.08997 * 109.47247 * 25.05648 * 1 2 3 29 29 H 1.09007 * 109.47163 * 145.05389 * 1 2 3 30 30 H 1.09002 * 109.46588 * 30.27439 * 3 2 1 31 31 H 1.09000 * 109.47004 * 150.27197 * 3 2 1 32 32 H 1.09001 * 109.47166 * 300.00029 * 4 3 2 33 33 H 1.09001 * 109.46706 * 59.99672 * 4 3 2 34 34 H 1.09001 * 109.47161 * 300.00158 * 5 4 3 35 35 H 1.09000 * 109.46863 * 59.99732 * 5 4 3 36 36 H 0.97000 * 120.00565 * 0.02562 * 6 5 4 37 37 H 1.09001 * 109.47108 * 300.00483 * 9 7 6 38 38 H 1.09007 * 109.46971 * 59.99991 * 9 7 6 39 39 H 0.96997 * 120.00682 * 179.97438 * 14 13 11 40 40 H 1.07992 * 126.18329 * 180.02562 * 23 22 21 41 41 H 1.08996 * 109.47065 * 89.99477 * 25 24 23 42 42 H 1.08998 * 109.47562 * 210.00245 * 25 24 23 43 43 H 1.09007 * 109.46807 * 329.99835 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4465 1.7139 -1.4424 5 6 3.2110 3.0392 -1.4425 6 7 3.4489 3.4657 -2.8236 7 6 4.1095 4.6144 -3.0698 8 8 4.5073 5.2947 -2.1480 9 6 4.3547 5.0529 -4.4906 10 16 5.2590 6.6208 -4.4906 11 6 5.4042 6.8903 -6.2258 12 1 4.9874 6.1756 -6.9200 13 6 6.0542 8.0211 -6.7005 14 7 6.1622 8.2227 -7.9968 15 14 6.7744 9.2576 -5.4998 16 1 8.1778 8.8855 -5.1882 17 1 6.7446 10.6125 -6.1070 18 1 5.9731 9.2579 -4.2495 19 6 2.1389 -1.1672 -0.0057 20 8 3.3498 -1.1694 -0.1115 21 6 1.4051 -2.4451 0.1171 22 7 0.0883 -2.5822 0.3575 23 6 -0.1688 -3.8650 0.3922 24 7 0.9874 -4.5184 0.1741 25 6 1.1532 -5.9733 0.1302 26 7 1.9230 -3.6488 0.0053 27 1 -0.3634 -0.0886 1.0238 28 1 -0.3633 0.9309 -0.4352 29 1 -0.3634 -0.8424 -0.5887 30 1 1.6105 2.0271 0.5181 31 1 3.1520 1.1371 0.5096 32 1 3.0334 0.9554 -1.9606 33 1 1.4920 1.8454 -1.9520 34 1 2.6237 3.7974 -0.9245 35 1 4.1655 2.9080 -0.9327 36 1 3.1304 2.9218 -3.5609 37 1 4.9424 4.2949 -5.0085 38 1 3.4001 5.1836 -5.0004 39 1 6.6161 9.0131 -8.3286 40 1 -1.1342 -4.3173 0.5646 41 1 1.0089 -6.3247 -0.8914 42 1 2.1565 -6.2350 0.4663 43 1 0.4173 -6.4427 0.7833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001743372263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:38 Heat of formation + Delta-G solvation = 2.763152 kcal Electronic energy + Delta-G solvation = -25568.661329 eV Core-core repulsion = 21583.772412 eV Total energy + Delta-G solvation = -3984.888917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.45680 -40.92826 -40.56075 -37.41533 -36.19654 -35.43795 -34.67272 -33.08817 -32.78041 -30.84093 -28.89504 -27.94461 -27.78406 -26.61769 -24.43434 -23.30867 -22.62256 -21.81856 -20.71910 -19.87391 -18.68433 -17.90648 -17.77469 -17.76930 -17.44750 -17.13780 -16.87970 -16.83066 -16.27270 -15.85336 -15.72240 -15.55169 -14.94915 -14.79852 -14.52547 -14.21917 -14.08963 -13.92695 -13.88700 -13.40273 -13.36798 -13.27215 -13.12542 -12.99377 -12.70109 -12.66234 -12.59768 -11.86406 -11.85425 -11.51837 -11.43027 -11.21576 -11.17030 -11.04027 -10.59747 -10.54003 -10.14095 -9.78397 -8.99710 -8.51480 -6.22485 0.27850 0.98663 1.11843 1.27464 1.32050 1.47256 1.55774 1.56640 1.89335 2.17763 2.24630 2.30241 2.72165 2.86764 3.00479 3.43104 3.81882 3.83510 3.94421 3.95042 4.15390 4.22544 4.32215 4.39168 4.42062 4.45552 4.46896 4.57501 4.69319 4.70457 4.80978 4.86924 5.04489 5.07282 5.15443 5.34672 5.40582 5.47177 5.68732 5.70704 6.11237 6.14394 6.45731 6.80590 6.93627 7.08144 7.18417 8.60956 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.031494 B = 0.001518 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.838287 B =18435.710863 C =18748.864505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.591 5.591 3 C 0.120 3.880 4 C -0.131 4.131 5 C 0.126 3.874 6 N -0.713 5.713 7 C 0.534 3.466 8 O -0.563 6.563 9 C -0.112 4.112 10 S -0.175 6.175 11 C -0.531 4.531 12 H 0.062 0.938 13 C 0.046 3.954 14 N -0.917 5.917 15 Si 0.915 3.085 16 H -0.263 1.263 17 H -0.257 1.257 18 H -0.236 1.236 19 C 0.603 3.397 20 O -0.564 6.564 21 C 0.117 3.883 22 N -0.496 5.496 23 C 0.204 3.796 24 N -0.301 5.301 25 C 0.073 3.927 26 N -0.292 5.292 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.416 0.584 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.277 0.723 40 H 0.280 0.720 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.792 -32.333 20.328 43.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.322 5.322 3 C -0.003 4.003 4 C -0.170 4.170 5 C 0.002 3.998 6 N -0.367 5.367 7 C 0.320 3.680 8 O -0.441 6.441 9 C -0.263 4.263 10 S 0.051 5.949 11 C -0.678 4.678 12 H 0.080 0.920 13 C -0.159 4.159 14 N -0.555 5.555 15 Si 0.737 3.263 16 H -0.188 1.188 17 H -0.182 1.182 18 H -0.160 1.160 19 C 0.388 3.612 20 O -0.440 6.440 21 C -0.161 4.161 22 N -0.222 5.222 23 C -0.091 4.091 24 N -0.096 5.096 25 C -0.065 4.065 26 N -0.134 5.134 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.136 0.864 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.253 0.747 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.087 0.913 40 H 0.296 0.704 41 H 0.124 0.876 42 H 0.112 0.888 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -20.016 -30.979 21.581 42.733 hybrid contribution 0.005 -0.720 -1.626 1.778 sum -20.012 -31.699 19.955 42.468 Atomic orbital electron populations 1.22181 0.75808 1.04210 1.03523 1.47642 1.09124 1.04274 1.71189 1.21514 0.98171 0.84134 0.96460 1.21995 1.01516 0.95138 0.98318 1.21261 1.00143 0.96131 0.82309 1.45740 1.57986 1.22961 1.10002 1.19952 0.77203 0.81075 0.89801 1.90687 1.51571 1.55086 1.46759 1.23278 1.05244 1.00441 0.97334 1.84695 1.74605 1.26560 1.09005 1.22470 1.42878 1.11909 0.90568 0.92003 1.25563 0.94835 0.98847 0.96662 1.70014 1.42564 1.29169 1.13731 0.85861 0.80453 0.79297 0.80714 1.18801 1.18166 1.16035 1.16754 0.85323 0.82334 0.76826 1.90815 1.14887 1.87098 1.51217 1.23474 0.90170 0.92890 1.09606 1.71451 1.11889 1.17944 1.20941 1.27637 0.95229 0.87343 0.98845 1.47793 1.05363 1.10079 1.46341 1.22752 1.07206 0.69606 1.06943 1.74286 1.19600 0.99742 1.19743 0.91420 0.89078 0.89733 0.86443 0.91032 0.92235 0.88767 0.90562 0.92673 0.74747 0.87098 0.86576 0.91350 0.70429 0.87611 0.88846 0.83704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 9.29 127.77 1.19 2.12 16 2 N -0.59 -10.42 2.87 -850.16 -2.44 -12.86 16 3 C 0.12 1.91 5.34 86.38 0.46 2.37 16 4 C -0.13 -2.14 5.65 30.59 0.17 -1.96 16 5 C 0.13 2.70 5.67 86.38 0.49 3.19 16 6 N -0.71 -17.78 5.56 -463.07 -2.57 -20.36 16 7 C 0.53 19.04 7.85 87.66 0.69 19.73 16 8 O -0.56 -24.75 15.86 -3.03 -0.05 -24.80 16 9 C -0.11 -4.35 6.16 71.24 0.44 -3.91 16 10 S -0.18 -9.06 18.55 -56.49 -1.05 -10.11 16 11 C -0.53 -31.48 10.04 67.95 0.68 -30.80 16 12 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 13 C 0.05 2.76 5.50 84.86 0.47 3.23 16 14 N -0.92 -56.53 13.97 21.65 0.30 -56.22 16 15 Si 0.91 45.73 27.74 68.60 1.90 47.63 16 16 H -0.26 -12.89 7.11 99.48 0.71 -12.18 16 17 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 18 H -0.24 -11.80 6.74 99.48 0.67 -11.13 16 19 C 0.60 15.04 7.67 86.79 0.67 15.71 16 20 O -0.56 -18.61 16.72 -3.88 -0.06 -18.68 16 21 C 0.12 2.53 7.57 137.12 1.04 3.56 16 22 N -0.50 -6.99 8.14 -193.03 -1.57 -8.56 16 23 C 0.20 1.18 12.62 180.30 2.27 3.46 16 24 N -0.30 -2.79 3.72 -373.47 -1.39 -4.18 16 25 C 0.07 -0.12 11.38 127.77 1.45 1.33 16 26 N -0.29 -6.10 12.09 -52.43 -0.63 -6.73 16 27 H 0.07 0.69 8.13 -2.39 -0.02 0.67 16 28 H 0.09 0.60 8.03 -2.39 -0.02 0.58 16 29 H 0.08 1.05 5.90 -2.38 -0.01 1.03 16 30 H 0.12 1.18 8.07 -2.39 -0.02 1.16 16 31 H 0.07 1.44 7.50 -2.39 -0.02 1.42 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.42 7.83 8.47 -92.71 -0.79 7.04 16 37 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 38 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 39 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 40 H 0.28 -1.94 8.06 -2.91 -0.02 -1.96 16 41 H 0.11 -0.42 8.14 -2.39 -0.02 -0.44 16 42 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 43 H 0.14 -1.45 8.14 -2.38 -0.02 -1.47 16 Total: -1.00 -93.89 384.70 2.67 -91.22 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 0.22 Total: 5.62 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 10.02 Total: 18.02 kcal Atomic # 7 Polarization: -100.60 SS G_CDS: -8.31 Total: -108.91 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -0.11 Total: -43.47 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.90 Total: 47.63 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.05 Total: -10.11 kcal Total: -93.89 2.67 -91.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001743372263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.981 kcal (2) G-P(sol) polarization free energy of solvation -93.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds