Wall clock time and date at job start Sat Apr 11 2020 06:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46495 * 120.00319 * 2 1 4 4 C 1.52999 * 109.47187 * 269.99867 * 3 2 1 5 5 C 1.52998 * 109.47288 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.47194 * 179.97438 * 5 4 3 7 7 C 1.34773 * 119.99907 * 179.97438 * 6 5 4 8 8 O 1.21277 * 120.00387 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.99803 * 179.97438 * 7 6 5 10 10 S 1.80997 * 109.47110 * 180.02562 * 9 7 6 11 11 C 1.76205 * 100.00061 * 179.97438 * 10 9 7 12 12 H 1.07995 * 119.99737 * 359.97438 * 11 10 9 13 13 C 1.38799 * 119.99936 * 179.97438 * 11 10 9 14 14 N 1.31630 * 119.99818 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99722 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46917 * 60.00283 * 15 13 11 17 17 H 1.48507 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48489 * 109.47377 * 299.99887 * 15 13 11 19 19 C 1.34775 * 119.99641 * 179.97438 * 2 1 3 20 20 O 1.21280 * 119.99917 * 180.02562 * 19 2 1 21 21 C 1.50704 * 119.99850 * 0.02562 * 19 2 1 22 22 N 1.46500 * 109.46856 * 179.97438 * 21 19 2 23 23 N 1.28606 * 124.62009 * 269.69791 * 22 21 19 24 24 C 1.31378 * 108.71572 * 180.26679 * 23 22 21 25 25 C 1.39671 * 105.90381 * 0.02562 * 24 23 22 26 26 N 1.28604 * 124.62059 * 90.00251 * 22 21 19 27 27 H 1.08995 * 109.47417 * 270.01118 * 1 2 3 28 28 H 1.09008 * 109.46541 * 30.00595 * 1 2 3 29 29 H 1.09001 * 109.47183 * 150.00173 * 1 2 3 30 30 H 1.09007 * 109.47121 * 29.99401 * 3 2 1 31 31 H 1.09003 * 109.47229 * 149.99419 * 3 2 1 32 32 H 1.09007 * 109.46709 * 299.99786 * 4 3 2 33 33 H 1.08995 * 109.47073 * 59.99562 * 4 3 2 34 34 H 1.09007 * 109.46707 * 299.99341 * 5 4 3 35 35 H 1.08995 * 109.47785 * 59.99552 * 5 4 3 36 36 H 0.97005 * 119.99785 * 359.97438 * 6 5 4 37 37 H 1.09007 * 109.47026 * 299.99989 * 9 7 6 38 38 H 1.09003 * 109.47282 * 59.99982 * 9 7 6 39 39 H 0.97001 * 119.99722 * 180.02562 * 14 13 11 40 40 H 1.08997 * 109.47108 * 60.00249 * 21 19 2 41 41 H 1.08998 * 109.47267 * 299.99463 * 21 19 2 42 42 H 1.08004 * 127.04592 * 179.97438 * 24 23 22 43 43 H 1.08006 * 127.04687 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2183 3.0349 -1.4425 6 7 3.4630 3.4575 -2.8237 7 6 4.1257 4.6049 -3.0700 8 8 4.5198 5.2874 -2.1482 9 6 4.3780 5.0393 -4.4908 10 16 5.2836 6.6064 -4.4909 11 6 5.4385 6.8703 -6.2262 12 1 5.0256 6.1533 -6.9203 13 6 6.0911 7.9995 -6.7009 14 7 6.5947 8.8731 -5.8547 15 14 6.2546 8.2796 -8.5405 16 1 4.9033 8.3631 -9.1505 17 1 6.9868 9.5483 -8.7849 18 1 7.0033 7.1505 -9.1485 19 6 2.1388 -1.1672 0.0005 20 8 3.3516 -1.1673 0.0010 21 6 1.3852 -2.4723 0.0005 22 7 2.3372 -3.5859 0.0005 23 7 2.8077 -4.1449 -1.0578 24 6 3.6257 -5.1078 -0.6978 25 6 3.6281 -5.1058 0.6989 26 7 2.8119 -4.1413 1.0588 27 1 -0.3634 0.0002 1.0276 28 1 -0.3633 0.8900 -0.5140 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1383 0.5139 32 1 3.0418 0.9505 -1.9563 33 1 1.5003 1.8406 -1.9563 34 1 2.6295 3.7949 -0.9286 35 1 4.1706 2.9043 -0.9288 36 1 3.1481 2.9114 -3.5610 37 1 4.9675 4.2794 -5.0039 38 1 3.4259 5.1694 -5.0055 39 1 7.0505 9.6625 -6.1865 40 1 0.7589 -2.5302 -0.8897 41 1 0.7583 -2.5298 0.8903 42 1 4.1818 -5.7665 -1.3485 43 1 4.1872 -5.7619 1.3497 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001743376395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:41 Heat of formation + Delta-G solvation = 46.085878 kcal Electronic energy + Delta-G solvation = -25599.765234 eV Core-core repulsion = 21616.754931 eV Total energy + Delta-G solvation = -3983.010303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.90675 -40.52151 -39.15475 -36.73869 -35.12711 -34.24368 -32.76567 -32.42379 -32.12605 -29.59834 -28.68959 -27.50184 -25.62376 -25.24786 -23.25178 -22.64434 -21.86339 -20.46361 -19.88030 -18.28676 -17.93173 -17.83828 -16.76399 -16.52487 -16.27544 -16.14070 -15.67560 -15.49571 -15.29117 -14.79908 -14.74467 -14.52713 -14.03685 -14.01220 -13.81528 -13.22233 -13.15808 -13.09451 -12.73948 -12.68342 -12.41973 -12.00066 -11.90536 -11.82964 -11.15918 -11.15507 -11.03986 -11.03159 -10.77177 -10.73244 -10.66941 -9.82355 -9.69082 -9.51000 -9.27109 -9.05825 -8.89705 -8.23475 -6.49410 -6.20825 -3.91551 1.31411 1.70373 1.88640 2.16229 2.40783 3.04902 3.10257 3.24032 3.28056 3.31970 3.63385 3.70171 3.73516 4.19771 4.21193 4.33843 4.41388 4.53410 4.62120 4.68384 4.72204 4.87544 4.97511 5.02549 5.07133 5.14156 5.18918 5.25899 5.49393 5.60319 5.62328 5.75412 5.82011 5.82965 5.90840 5.95668 6.14347 6.20771 6.59903 6.62275 7.44140 7.59873 7.69837 7.94893 8.35704 8.61119 9.24233 10.86556 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.019707 B = 0.001585 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.498204 B =17664.678232 C =18415.433739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.611 5.611 3 C 0.119 3.881 4 C -0.146 4.146 5 C 0.125 3.875 6 N -0.739 5.739 7 C 0.532 3.468 8 O -0.518 6.518 9 C -0.154 4.154 10 S -0.060 6.060 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.500 3.500 20 O -0.512 6.512 21 C 0.125 3.875 22 N -0.148 5.148 23 N -0.282 5.282 24 C -0.022 4.022 25 C -0.022 4.022 26 N -0.283 5.283 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.398 0.602 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.269 0.731 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.199 0.801 43 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.911 -28.006 13.215 35.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.346 5.346 3 C -0.004 4.004 4 C -0.185 4.185 5 C 0.000 4.000 6 N -0.394 5.394 7 C 0.318 3.682 8 O -0.392 6.392 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.199 1.199 19 C 0.285 3.715 20 O -0.385 6.385 21 C 0.001 3.999 22 N -0.048 5.048 23 N -0.122 5.122 24 C -0.205 4.205 25 C -0.206 4.206 26 N -0.123 5.123 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.232 0.768 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.216 0.784 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -16.404 -25.610 14.808 33.826 hybrid contribution 0.056 -1.596 -2.661 3.103 sum -16.348 -27.206 12.147 33.985 Atomic orbital electron populations 1.21984 0.78728 1.04049 1.02660 1.47773 1.07329 1.05707 1.73773 1.21448 0.98399 0.83674 0.96834 1.22133 1.01211 0.97484 0.97665 1.21121 1.00137 0.94578 0.84176 1.45972 1.60411 1.24999 1.08015 1.20313 0.76687 0.79892 0.91350 1.90701 1.49271 1.53103 1.46096 1.23535 1.05394 1.06434 0.95063 1.85394 1.70420 1.17743 1.09780 1.22832 1.43091 1.11036 0.91523 0.90975 1.24992 0.94643 0.94913 0.99017 1.70010 1.34841 1.10977 1.34448 0.86221 0.78422 0.77720 0.83114 1.19956 1.20795 1.19935 1.20500 0.88412 0.85201 0.77389 1.90831 1.13374 1.86707 1.47630 1.21722 0.89065 0.81165 1.07943 1.47319 1.32824 1.24935 0.99726 1.74063 1.12837 1.09575 1.15714 1.24828 1.01104 0.99161 0.95433 1.24816 1.01178 0.99136 0.95439 1.74039 1.12802 1.09686 1.15788 0.91615 0.89876 0.90907 0.89416 0.89133 0.90778 0.90971 0.91440 0.91407 0.76848 0.89213 0.89228 0.92126 0.84496 0.84516 0.78389 0.78406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.11 10.24 59.85 0.61 0.73 16 2 N -0.61 -3.60 2.87 -181.57 -0.52 -4.12 16 3 C 0.12 0.84 5.41 -4.04 -0.02 0.82 16 4 C -0.15 -1.17 5.65 -26.73 -0.15 -1.32 16 5 C 0.12 1.42 5.67 -4.04 -0.02 1.39 16 6 N -0.74 -10.00 5.56 -60.29 -0.33 -10.33 16 7 C 0.53 10.11 7.85 -10.99 -0.09 10.02 16 8 O -0.52 -11.97 15.86 5.56 0.09 -11.89 16 9 C -0.15 -3.15 6.16 36.01 0.22 -2.92 16 10 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 11 C -0.54 -15.43 9.50 30.94 0.29 -15.14 16 12 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 13 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 14 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 15 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 C 0.50 4.31 7.74 -10.98 -0.09 4.23 16 20 O -0.51 -7.10 16.01 5.56 0.09 -7.01 16 21 C 0.13 0.72 5.57 -5.19 -0.03 0.70 16 22 N -0.15 -1.43 3.44 -11.66 -0.04 -1.47 16 23 N -0.28 -2.93 12.05 30.67 0.37 -2.56 16 24 C -0.02 -0.18 12.20 -17.21 -0.21 -0.39 16 25 C -0.02 -0.18 12.20 -17.21 -0.21 -0.39 16 26 N -0.28 -2.89 12.05 30.67 0.37 -2.52 16 27 H 0.07 0.04 8.14 -51.93 -0.42 -0.39 16 28 H 0.08 0.10 8.07 -51.92 -0.42 -0.32 16 29 H 0.07 -0.02 6.44 -51.93 -0.33 -0.36 16 30 H 0.09 0.44 8.07 -51.92 -0.42 0.02 16 31 H 0.09 0.84 7.42 -51.93 -0.39 0.45 16 32 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.40 4.23 8.47 -40.82 -0.35 3.88 16 37 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 38 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 39 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.14 0.39 7.40 -51.93 -0.38 0.00 16 41 H 0.14 0.37 8.11 -51.93 -0.42 -0.05 16 42 H 0.20 0.86 8.06 -52.48 -0.42 0.43 16 43 H 0.20 0.80 8.06 -52.48 -0.42 0.38 16 LS Contribution 389.40 15.07 5.87 5.87 Total: -1.00 -42.06 389.40 -6.46 -48.52 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -6.06 Total: -1.28 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 0.22 Total: -0.25 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.58 Total: -46.62 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.18 Total: -18.90 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -42.06 -6.46 -48.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001743376395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.604 kcal (2) G-P(sol) polarization free energy of solvation -42.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds