Wall clock time and date at job start Sat Apr 11 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46560 * 2 1 4 4 C 1.53000 * 109.47275 * 120.00490 * 2 1 3 5 5 N 1.46504 * 109.46805 * 175.00341 * 4 2 1 6 6 C 1.34771 * 119.99442 * 180.02562 * 5 4 2 7 7 O 1.21274 * 120.00698 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.99505 * 179.97438 * 6 5 4 9 9 S 1.81006 * 109.46932 * 179.97438 * 8 6 5 10 10 C 1.76197 * 99.99920 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00325 * 359.97438 * 10 9 8 12 12 C 1.38804 * 119.99895 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99614 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00119 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46716 * 89.99784 * 14 12 10 16 16 H 1.48497 * 109.47355 * 210.00041 * 14 12 10 17 17 H 1.48496 * 109.47181 * 330.00357 * 14 12 10 18 18 N 1.46499 * 109.46818 * 240.00501 * 2 1 3 19 19 C 1.46498 * 120.00200 * 299.99560 * 18 2 1 20 20 C 1.34784 * 119.99791 * 120.00011 * 18 2 1 21 21 O 1.21546 * 120.00215 * 3.59335 * 20 18 2 22 22 C 1.47879 * 119.99660 * 183.59960 * 20 18 2 23 23 N 1.34546 * 126.05030 * 352.59732 * 22 20 18 24 24 C 1.30867 * 107.26967 * 179.97438 * 23 22 20 25 25 N 1.34583 * 107.62246 * 0.02562 * 24 23 22 26 26 C 1.46506 * 125.74577 * 180.02562 * 25 24 23 27 27 N 1.28848 * 108.50916 * 0.02562 * 25 24 23 28 28 H 1.09000 * 109.47351 * 59.99765 * 1 2 3 29 29 H 1.08998 * 109.46428 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46973 * 299.99532 * 1 2 3 31 31 H 1.08998 * 109.47056 * 294.99983 * 4 2 1 32 32 H 1.09000 * 109.46966 * 54.99940 * 4 2 1 33 33 H 0.96999 * 120.00265 * 359.97438 * 5 4 2 34 34 H 1.08998 * 109.47166 * 299.99754 * 8 6 5 35 35 H 1.09000 * 109.47479 * 60.00093 * 8 6 5 36 36 H 0.97002 * 119.99295 * 180.02562 * 13 12 10 37 37 H 1.08994 * 109.47103 * 263.95072 * 19 18 2 38 38 H 1.09003 * 109.47169 * 23.95448 * 19 18 2 39 39 H 1.09001 * 109.47326 * 143.95464 * 19 18 2 40 40 H 1.07996 * 126.18771 * 180.02562 * 24 23 22 41 41 H 1.09002 * 109.47532 * 90.00210 * 26 25 24 42 42 H 1.09005 * 109.46719 * 210.00337 * 26 25 24 43 43 H 1.09000 * 109.46759 * 330.00050 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2492 5 7 3.5002 -0.8263 1.1904 6 6 4.1731 -1.4292 2.1905 7 8 3.5702 -1.8843 3.1392 8 6 5.6750 -1.5377 2.1298 9 16 6.2785 -2.3910 3.6076 10 6 8.0100 -2.3793 3.2821 11 1 8.3862 -1.9272 2.3762 12 6 8.8908 -2.9510 4.1899 13 7 10.1844 -2.9417 3.9469 14 14 8.2403 -3.7322 5.7571 15 1 7.9515 -5.1680 5.5114 16 1 9.2583 -3.6087 6.8312 17 1 6.9941 -3.0410 6.1744 18 7 2.0183 -0.6905 -1.1962 19 6 1.6645 -2.0931 -1.4282 20 6 2.7932 -0.0354 -2.0834 21 8 3.1408 1.1075 -1.8592 22 6 3.2203 -0.7071 -3.3297 23 7 3.0273 -2.0027 -3.6370 24 6 3.5479 -2.2029 -4.8208 25 7 4.0617 -1.0329 -5.2431 26 6 4.7401 -0.8079 -6.5220 27 7 3.8566 -0.1439 -4.3333 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7518 -0.1585 2.1369 32 1 1.6055 -1.7199 1.2950 33 1 3.9825 -0.4627 0.4315 34 1 5.9631 -2.1005 1.2418 35 1 6.1100 -0.5393 2.0841 36 1 10.7998 -3.3416 4.5812 37 1 2.4679 -2.7350 -1.0670 38 1 0.7436 -2.3285 -0.8946 39 1 1.5186 -2.2593 -2.4955 40 1 3.5626 -3.1379 -5.3612 41 1 4.0085 -0.5141 -7.2747 42 1 5.4804 -0.0162 -6.4062 43 1 5.2363 -1.7261 -6.8365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756005355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:08 Heat of formation + Delta-G solvation = 40.175245 kcal Electronic energy + Delta-G solvation = -27125.403223 eV Core-core repulsion = 23142.136616 eV Total energy + Delta-G solvation = -3983.266607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.83438 -40.33096 -39.00209 -36.80845 -35.16561 -33.99513 -32.40010 -32.14096 -31.97081 -29.47619 -28.27187 -27.16459 -25.98223 -25.49540 -24.52687 -22.88068 -21.41778 -20.35844 -19.72675 -18.08267 -17.83315 -17.25042 -17.09378 -16.66639 -16.35344 -15.95978 -15.49274 -15.33418 -14.97780 -14.91413 -14.07576 -13.88396 -13.84116 -13.79721 -13.51480 -13.26471 -13.12446 -12.95123 -12.80866 -12.75466 -12.49144 -12.16379 -11.98015 -11.80718 -11.23434 -11.20498 -10.97474 -10.81557 -10.62349 -10.55623 -10.34862 -9.95147 -9.82226 -9.47241 -8.97785 -8.94957 -8.88673 -8.45450 -6.86841 -6.25107 -3.96162 1.04147 1.70365 1.76076 2.53806 2.82870 3.03762 3.05478 3.34766 3.38254 3.53903 3.65385 3.73665 3.91749 4.22410 4.36823 4.45897 4.48362 4.61212 4.74258 4.78196 4.83986 4.94520 4.99711 5.13878 5.32262 5.33075 5.40912 5.43197 5.60900 5.61999 5.73794 5.76806 5.83899 5.88718 5.95424 6.08934 6.10049 6.30548 6.60058 6.95611 7.54515 7.67912 7.86734 7.98228 8.46236 8.56036 9.21115 10.84285 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.002785 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.847062 B =10052.624561 C =11785.388315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 H 0.111 0.889 4 C 0.114 3.886 5 N -0.732 5.732 6 C 0.532 3.468 7 O -0.521 6.521 8 C -0.124 4.124 9 S -0.140 6.140 10 C -0.520 4.520 11 H 0.087 0.913 12 C 0.095 3.905 13 N -0.882 5.882 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 N -0.591 5.591 19 C 0.070 3.930 20 C 0.614 3.386 21 O -0.518 6.518 22 C 0.145 3.855 23 N -0.479 5.479 24 C 0.190 3.810 25 N -0.303 5.303 26 C 0.084 3.916 27 N -0.250 5.250 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.399 0.601 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.270 0.730 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.227 0.773 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.394 2.748 -23.777 30.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.021 3.979 3 H 0.129 0.871 4 C -0.012 4.012 5 N -0.387 5.387 6 C 0.318 3.682 7 O -0.396 6.396 8 C -0.274 4.274 9 S 0.086 5.914 10 C -0.668 4.668 11 H 0.105 0.895 12 C -0.114 4.114 13 N -0.518 5.518 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.159 1.159 18 N -0.325 5.325 19 C -0.072 4.072 20 C 0.398 3.602 21 O -0.390 6.390 22 C -0.135 4.135 23 N -0.205 5.205 24 C -0.105 4.105 25 N -0.099 5.099 26 C -0.056 4.056 27 N -0.090 5.090 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.233 0.767 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.120 0.880 40 H 0.243 0.757 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.012 3.008 -21.803 29.747 hybrid contribution 1.166 -0.105 -1.270 1.727 sum -18.846 2.903 -23.073 29.933 Atomic orbital electron populations 1.22071 0.93278 1.03083 1.03175 1.21488 0.95109 0.98385 0.82870 0.87121 1.21666 0.81150 1.01301 0.97043 1.45885 1.06946 1.61469 1.24358 1.20227 0.89379 0.76854 0.81717 1.90686 1.69866 1.46457 1.32613 1.23275 0.93570 1.05490 1.05107 1.84718 1.06824 1.75400 1.24474 1.22335 0.88753 1.44535 1.11165 0.89455 1.24720 0.94095 0.94563 0.97979 1.69948 1.01561 1.43602 1.36725 0.86722 0.80808 0.81182 0.83065 1.19230 1.19975 1.15877 1.47614 1.49765 1.13452 1.21639 1.22251 1.00720 0.79660 1.04553 1.16366 0.78581 0.84637 0.80652 1.90849 1.55255 1.16944 1.75969 1.23601 1.03755 0.89027 0.97103 1.71470 1.21954 1.14926 1.12113 1.26664 0.97008 0.93375 0.93488 1.47407 1.40039 1.06946 1.15464 1.22294 0.98386 1.05551 0.79418 1.74360 1.16971 1.18625 0.99011 0.91653 0.91591 0.90548 0.90176 0.91027 0.76676 0.88730 0.88507 0.91989 0.92012 0.91355 0.87972 0.75679 0.89059 0.88016 0.87796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.18 37.16 0.34 -0.77 16 2 C 0.12 1.22 2.79 -67.93 -0.19 1.03 16 3 H 0.11 1.23 6.90 -51.93 -0.36 0.87 16 4 C 0.11 1.34 4.97 -4.04 -0.02 1.32 16 5 N -0.73 -10.78 5.39 -60.29 -0.32 -11.11 16 6 C 0.53 10.16 7.85 -10.99 -0.09 10.07 16 7 O -0.52 -11.61 15.86 5.56 0.09 -11.52 16 8 C -0.12 -2.59 6.16 36.01 0.22 -2.37 16 9 S -0.14 -3.69 18.55 -107.50 -1.99 -5.69 16 10 C -0.52 -15.46 10.04 30.94 0.31 -15.15 16 11 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 12 C 0.09 2.84 5.50 -17.43 -0.10 2.74 16 13 N -0.88 -27.16 13.97 55.49 0.78 -26.39 16 14 Si 0.86 22.24 27.74 -169.99 -4.71 17.52 16 15 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.23 -6.08 6.74 56.52 0.38 -5.70 16 18 N -0.59 -6.27 2.24 -175.03 -0.39 -6.67 16 19 C 0.07 0.64 8.72 59.85 0.52 1.16 16 20 C 0.61 8.08 7.39 -12.31 -0.09 7.99 16 21 O -0.52 -8.27 16.42 5.33 0.09 -8.18 16 22 C 0.14 1.77 7.64 -156.35 -1.19 0.58 16 23 N -0.48 -4.69 7.90 -12.36 -0.10 -4.79 16 24 C 0.19 1.21 12.62 -90.49 -1.14 0.07 16 25 N -0.30 -2.20 3.72 -69.39 -0.26 -2.46 16 26 C 0.08 0.17 11.38 59.85 0.68 0.85 16 27 N -0.25 -2.96 12.09 32.08 0.39 -2.57 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.41 6.67 -51.93 -0.35 0.07 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.84 7.84 -51.93 -0.41 0.44 16 33 H 0.40 5.67 7.87 -40.82 -0.32 5.35 16 34 H 0.09 1.88 8.14 -51.92 -0.42 1.46 16 35 H 0.10 1.94 8.14 -51.92 -0.42 1.52 16 36 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.49 6.44 -51.93 -0.33 0.16 16 39 H 0.10 0.91 5.34 -51.93 -0.28 0.63 16 40 H 0.23 0.28 8.06 -52.49 -0.42 -0.15 16 41 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 42 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.10 -0.09 8.14 -51.93 -0.42 -0.52 16 LS Contribution 377.79 15.07 5.69 5.69 Total: -1.00 -40.08 377.79 -7.34 -47.42 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -5.85 Total: 1.22 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -0.74 Total: 7.51 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.09 Total: -53.97 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: 0.18 Total: -19.70 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.52 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -40.08 -7.34 -47.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756005355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.593 kcal (2) G-P(sol) polarization free energy of solvation -40.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds