Wall clock time and date at job start Sat Apr 11 2020 06:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47117 * 2 1 4 4 C 1.52997 * 109.47451 * 120.00172 * 2 1 3 5 5 N 1.46505 * 109.47555 * 174.99915 * 4 2 1 6 6 C 1.46496 * 119.99774 * 270.00551 * 5 4 2 7 7 C 1.34768 * 119.99775 * 89.99687 * 5 4 2 8 8 O 1.21283 * 120.00212 * 0.02562 * 7 5 4 9 9 C 1.50699 * 119.99911 * 180.02562 * 7 5 4 10 10 S 1.80999 * 109.47248 * 180.02562 * 9 7 5 11 11 C 1.76199 * 100.00192 * 180.02562 * 10 9 7 12 12 H 1.08009 * 120.00044 * 359.97438 * 11 10 9 13 13 C 1.38799 * 120.00309 * 180.02562 * 11 10 9 14 14 N 1.31626 * 119.99937 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00150 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47226 * 59.99916 * 15 13 11 17 17 H 1.48498 * 109.47254 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47288 * 299.99660 * 15 13 11 19 19 N 1.46504 * 109.46966 * 240.00624 * 2 1 3 20 20 C 1.34772 * 120.00086 * 85.00271 * 19 2 1 21 21 O 1.21283 * 120.00122 * 359.97438 * 20 19 2 22 22 C 1.50703 * 119.99767 * 180.02562 * 20 19 2 23 23 N 1.46506 * 109.46782 * 179.97438 * 22 20 19 24 24 C 1.34424 * 126.82028 * 125.00177 * 23 22 20 25 25 N 1.30835 * 108.07649 * 179.97438 * 24 23 22 26 26 C 1.33238 * 109.83029 * 0.02562 * 25 24 23 27 27 N 1.30712 * 108.94316 * 359.75029 * 26 25 24 28 28 H 1.09003 * 109.46905 * 299.99874 * 1 2 3 29 29 H 1.09000 * 109.47338 * 59.99638 * 1 2 3 30 30 H 1.08997 * 109.47206 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47418 * 294.99966 * 4 2 1 32 32 H 1.09003 * 109.47071 * 55.00035 * 4 2 1 33 33 H 1.09002 * 109.47502 * 89.99848 * 6 5 4 34 34 H 1.08999 * 109.47112 * 209.99296 * 6 5 4 35 35 H 1.08998 * 109.47470 * 329.99317 * 6 5 4 36 36 H 1.09002 * 109.47545 * 300.00381 * 9 7 5 37 37 H 1.09007 * 109.47092 * 60.00822 * 9 7 5 38 38 H 0.97006 * 120.00268 * 180.02562 * 14 13 11 39 39 H 0.96997 * 119.99399 * 264.99524 * 19 2 1 40 40 H 1.08999 * 109.47353 * 59.99471 * 22 20 19 41 41 H 1.09000 * 109.47019 * 299.99125 * 22 20 19 42 42 H 1.07997 * 125.96622 * 359.97438 * 24 23 22 43 43 H 1.07993 * 125.52851 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1258 -1.9919 0.5610 7 6 4.2676 0.1491 1.7155 8 8 3.7495 1.1139 2.2369 9 6 5.7694 0.0413 1.6546 10 16 6.5110 1.4946 2.4383 11 6 8.2193 1.1163 2.2302 12 1 8.5137 0.2021 1.7360 13 6 9.1867 1.9926 2.7021 14 7 8.8280 3.1064 3.3048 15 14 10.9977 1.5912 2.4821 16 1 11.3043 1.4641 1.0347 17 1 11.8207 2.6794 3.0682 18 1 11.3079 0.3112 3.1680 19 7 2.0183 -0.6905 -1.1963 20 6 2.1470 -0.0181 -2.3571 21 8 1.8582 1.1586 -2.4116 22 6 2.6488 -0.7286 -3.5878 23 7 2.6976 0.2129 -4.7093 24 6 3.7632 0.4945 -5.4789 25 7 3.3986 1.3824 -6.3679 26 6 2.1136 1.6910 -6.1979 27 7 1.6393 0.9966 -5.1972 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.7517 -0.1584 2.1369 32 1 1.6054 -1.7198 1.2951 33 1 4.2798 -1.7932 -0.4996 34 1 5.0864 -2.1898 1.0367 35 1 3.4770 -2.8599 0.6776 36 1 6.0908 -0.8581 2.1801 37 1 6.0880 -0.0127 0.6135 38 1 9.5041 3.7191 3.6343 39 1 2.2490 -1.6316 -1.1527 40 1 1.9759 -1.5503 -3.8327 41 1 3.6479 -1.1211 -3.3987 42 1 4.7484 0.0631 -5.3805 43 1 1.5536 2.3967 -6.7933 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756430818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:11 Heat of formation + Delta-G solvation = 33.230597 kcal Electronic energy + Delta-G solvation = -27150.812838 eV Core-core repulsion = 23167.245088 eV Total energy + Delta-G solvation = -3983.567750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.26669 -40.33622 -39.32669 -36.57419 -34.62554 -34.29546 -32.46539 -31.90352 -31.36690 -29.59422 -28.23371 -27.40422 -25.75779 -25.29156 -23.05262 -22.19258 -21.65827 -20.77838 -19.45730 -17.83976 -17.80496 -17.65352 -16.78833 -16.37286 -16.05385 -15.86233 -15.56900 -15.09273 -14.96025 -14.83903 -14.30346 -14.10488 -13.97687 -13.61158 -13.47036 -13.29401 -13.02007 -12.82668 -12.68064 -12.45774 -12.25552 -12.13256 -12.06475 -11.88434 -11.31493 -11.08620 -11.07042 -10.80363 -10.54386 -10.22393 -9.96264 -9.86193 -9.76412 -9.55117 -9.40555 -9.09484 -8.67089 -8.27840 -6.54743 -6.24821 -3.96344 1.38233 1.90116 2.25887 2.70693 2.81004 2.86541 2.95593 3.20369 3.21787 3.26370 3.51978 4.03401 4.12413 4.16516 4.24735 4.46947 4.55926 4.62926 4.65986 4.86553 4.97208 5.00754 5.06466 5.10032 5.17213 5.26727 5.41207 5.43516 5.50833 5.61911 5.80097 5.81490 5.94432 5.96919 6.03310 6.16776 6.23258 6.47168 6.47874 7.09439 7.35678 7.54957 7.85277 7.89637 8.30770 8.43769 9.20021 10.82527 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009969 B = 0.002927 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.172719 B = 9563.452770 C =11453.711352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.126 3.874 3 H 0.096 0.904 4 C 0.111 3.889 5 N -0.625 5.625 6 C 0.078 3.922 7 C 0.533 3.467 8 O -0.510 6.510 9 C -0.149 4.149 10 S -0.060 6.060 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.274 1.274 19 N -0.719 5.719 20 C 0.499 3.501 21 O -0.503 6.503 22 C 0.112 3.888 23 N -0.371 5.371 24 C 0.258 3.742 25 N -0.544 5.544 26 C 0.193 3.807 27 N -0.292 5.292 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.270 0.730 39 H 0.397 0.603 40 H 0.118 0.882 41 H 0.130 0.870 42 H 0.220 0.780 43 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.610 -16.644 -13.290 25.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.021 3.979 3 H 0.114 0.886 4 C -0.013 4.013 5 N -0.361 5.361 6 C -0.065 4.065 7 C 0.321 3.679 8 O -0.384 6.384 9 C -0.300 4.300 10 S 0.166 5.834 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.373 5.373 20 C 0.282 3.718 21 O -0.375 6.375 22 C -0.015 4.015 23 N -0.163 5.163 24 C -0.039 4.039 25 N -0.270 5.270 26 C -0.110 4.110 27 N -0.118 5.118 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.231 0.769 40 H 0.136 0.864 41 H 0.148 0.852 42 H 0.236 0.764 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -16.065 -14.015 -12.389 24.658 hybrid contribution 2.144 -2.077 -0.620 3.049 sum -13.922 -16.092 -13.008 24.940 Atomic orbital electron populations 1.22100 0.94451 1.02056 1.03224 1.21497 0.94165 0.98766 0.83493 0.88551 1.21755 0.80302 1.01174 0.98035 1.47816 1.05621 1.22252 1.60389 1.21825 0.99573 0.87528 0.97600 1.20383 0.89053 0.81625 0.76832 1.90715 1.74601 1.30478 1.42559 1.23543 0.93514 1.07504 1.05427 1.85463 1.02335 1.21085 1.74491 1.22796 0.91033 1.09810 1.44884 0.91027 1.24993 0.99619 0.94449 0.94473 1.70004 1.34455 1.09849 1.35853 0.86225 0.82508 0.78151 0.78623 1.19918 1.20769 1.19931 1.45949 1.68075 1.13739 1.09500 1.20391 0.79108 0.87930 0.84376 1.90842 1.47451 1.15251 1.84003 1.21571 1.05645 0.90722 0.83578 1.49953 1.08404 1.32872 1.25042 1.26124 0.94712 0.94690 0.88390 1.70540 1.13619 1.16502 1.26369 1.26020 0.90543 0.99377 0.95024 1.78160 1.10515 1.09347 1.13812 0.91079 0.91774 0.92420 0.88111 0.90170 0.93196 0.90320 0.91232 0.89250 0.89473 0.92062 0.76899 0.86446 0.85173 0.76369 0.76730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 2 C 0.13 1.29 2.88 -67.93 -0.20 1.10 16 3 H 0.10 1.47 7.58 -51.93 -0.39 1.07 16 4 C 0.11 1.06 5.07 -4.04 -0.02 1.04 16 5 N -0.62 -7.26 2.73 -181.58 -0.50 -7.76 16 6 C 0.08 0.56 9.02 59.84 0.54 1.10 16 7 C 0.53 9.44 7.69 -10.99 -0.08 9.35 16 8 O -0.51 -11.21 15.44 5.55 0.09 -11.12 16 9 C -0.15 -2.88 4.71 36.01 0.17 -2.71 16 10 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 11 C -0.54 -15.04 9.50 30.94 0.29 -14.75 16 12 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 15 Si 0.92 21.10 29.55 -169.99 -5.02 16.08 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 N -0.72 -5.64 4.35 -53.81 -0.23 -5.87 16 20 C 0.50 5.20 7.83 -10.99 -0.09 5.11 16 21 O -0.50 -8.20 15.41 5.55 0.09 -8.11 16 22 C 0.11 0.70 7.03 -5.19 -0.04 0.67 16 23 N -0.37 -3.79 3.40 -63.81 -0.22 -4.01 16 24 C 0.26 2.42 12.63 -90.66 -1.14 1.28 16 25 N -0.54 -6.53 11.19 -15.84 -0.18 -6.70 16 26 C 0.19 2.26 13.03 -91.82 -1.20 1.06 16 27 N -0.29 -3.80 11.83 29.29 0.35 -3.45 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 1.15 7.42 -51.93 -0.39 0.77 16 32 H 0.08 0.47 7.89 -51.93 -0.41 0.06 16 33 H 0.05 0.28 7.39 -51.93 -0.38 -0.11 16 34 H 0.08 0.63 6.44 -51.93 -0.33 0.30 16 35 H 0.07 0.27 7.89 -51.93 -0.41 -0.14 16 36 H 0.09 1.57 7.40 -51.91 -0.38 1.18 16 37 H 0.09 1.56 8.11 -51.91 -0.42 1.14 16 38 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.40 1.64 7.07 -40.82 -0.29 1.35 16 40 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.13 0.31 8.09 -51.93 -0.42 -0.11 16 42 H 0.22 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.22 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 383.47 15.07 5.78 5.78 Total: -1.00 -42.26 383.47 -8.75 -51.00 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.91 Total: -0.93 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -1.50 Total: 4.22 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.04 Total: -53.08 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.17 Total: -19.23 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -42.26 -8.75 -51.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756430818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.235 kcal (2) G-P(sol) polarization free energy of solvation -42.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds