Wall clock time and date at job start Sat Apr 11 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86806 * 119.99972 * 2 1 4 4 H 1.48498 * 109.46994 * 269.99748 * 3 2 1 5 5 H 1.48498 * 109.46964 * 30.00118 * 3 2 1 6 6 H 1.48498 * 109.47105 * 149.99888 * 3 2 1 7 7 C 1.39939 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99928 * 162.60903 * 7 2 1 9 9 C 1.41428 * 119.99893 * 342.60141 * 7 2 1 10 10 C 1.40796 * 120.17509 * 154.91141 * 9 7 2 11 11 C 1.37713 * 120.03724 * 180.02562 * 10 9 7 12 12 C 1.38362 * 120.41473 * 359.78596 * 11 10 9 13 13 C 1.39885 * 120.35966 * 0.47436 * 12 11 10 14 14 C 1.47888 * 120.02657 * 179.78432 * 13 12 11 15 15 O 1.21550 * 119.99659 * 179.72016 * 14 13 12 16 16 N 1.34776 * 120.00015 * 359.72440 * 14 13 12 17 17 C 1.46498 * 119.99614 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.46860 * 179.97438 * 17 16 14 19 19 H 1.09000 * 109.46977 * 304.99567 * 18 17 16 20 20 O 1.42899 * 109.47271 * 64.99550 * 18 17 16 21 21 C 1.52996 * 109.47236 * 185.00059 * 18 17 16 22 22 O 1.42902 * 109.47545 * 174.99915 * 21 18 17 23 23 C 1.35897 * 117.00376 * 179.97438 * 22 21 18 24 24 C 1.38728 * 120.05571 * 359.72778 * 23 22 21 25 25 C 1.38145 * 119.94421 * 179.74746 * 24 23 22 26 26 C 1.38268 * 120.05567 * 0.50154 * 25 24 23 27 27 C 1.38265 * 120.10827 * 359.77128 * 26 25 24 28 28 C 1.38146 * 120.05631 * 359.97438 * 27 26 25 29 29 C 1.39028 * 119.94572 * 359.50666 * 13 12 11 30 30 H 0.96997 * 119.99836 * 0.02562 * 1 2 3 31 31 H 1.07996 * 119.98041 * 0.02562 * 10 9 7 32 32 H 1.07997 * 119.78995 * 180.02562 * 11 10 9 33 33 H 1.08001 * 119.82443 * 180.23270 * 12 11 10 34 34 H 0.97003 * 119.99990 * 359.97438 * 16 14 13 35 35 H 1.08994 * 109.47725 * 60.00121 * 17 16 14 36 36 H 1.08995 * 109.47324 * 299.99327 * 17 16 14 37 37 H 0.96697 * 114.00203 * 60.00253 * 20 18 17 38 38 H 1.09007 * 109.47103 * 294.99609 * 21 18 17 39 39 H 1.09000 * 109.47235 * 54.99401 * 21 18 17 40 40 H 1.08010 * 120.02989 * 359.97438 * 24 23 22 41 41 H 1.08003 * 119.97372 * 180.27269 * 25 24 23 42 42 H 1.07996 * 119.93980 * 179.75239 * 26 25 24 43 43 H 1.07999 * 119.97065 * 179.97438 * 27 26 25 44 44 H 1.07999 * 120.02229 * 179.97438 * 28 27 26 45 45 H 1.08006 * 120.20213 * 180.23651 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0510 -1.2332 -0.2801 9 6 1.3493 -2.4088 0.3652 10 6 1.8189 -3.6484 -0.1094 11 6 1.1751 -4.8121 0.2480 12 6 0.0680 -4.7739 1.0771 13 6 -0.4162 -3.5513 1.5540 14 6 -1.6030 -3.5186 2.4359 15 8 -2.0202 -2.4564 2.8541 16 7 -2.2217 -4.6667 2.7759 17 6 -3.3976 -4.6342 3.6491 18 6 -3.9035 -6.0601 3.8764 19 1 -4.0897 -6.5373 2.9142 20 8 -2.9192 -6.8059 4.5953 21 6 -5.2021 -6.0178 4.6843 22 8 -5.7362 -7.3385 4.7971 23 6 -6.8966 -7.4776 5.4907 24 6 -7.5056 -6.3667 6.0561 25 6 -8.6878 -6.5100 6.7562 26 6 -9.2587 -7.7607 6.9026 27 6 -8.6507 -8.8703 6.3449 28 6 -7.4711 -8.7315 5.6394 29 6 0.2225 -2.3673 1.2030 30 1 -0.4850 0.8400 -0.0004 31 1 2.6845 -3.6867 -0.7541 32 1 1.5389 -5.7608 -0.1179 33 1 -0.4274 -5.6927 1.3544 34 1 -1.8888 -5.5144 2.4419 35 1 -4.1824 -4.0411 3.1798 36 1 -3.1275 -4.1874 4.6058 37 1 -2.7033 -6.4381 5.4632 38 1 -4.9981 -5.6222 5.6794 39 1 -5.9237 -5.3759 4.1790 40 1 -7.0577 -5.3900 5.9458 41 1 -9.1646 -5.6448 7.1928 42 1 -10.1809 -7.8712 7.4537 43 1 -9.0984 -9.8462 6.4609 44 1 -6.9965 -9.5985 5.2043 45 1 -0.1456 -1.4214 1.5720 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052800521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:54 Heat of formation + Delta-G solvation = -84.146356 kcal Electronic energy + Delta-G solvation = -27476.616877 eV Core-core repulsion = 23423.762921 eV Total energy + Delta-G solvation = -4052.853955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.52256 -39.40238 -38.27405 -37.20602 -36.77094 -34.10151 -33.66884 -31.61440 -31.08847 -30.30780 -29.56390 -29.40441 -26.34774 -25.23174 -23.34546 -22.66330 -21.98194 -21.82956 -20.93082 -19.53401 -18.65003 -17.81649 -17.32395 -16.93467 -16.26937 -16.19298 -15.57197 -15.48735 -15.31735 -14.97783 -14.82989 -14.54213 -14.16363 -13.91553 -13.73172 -13.70202 -13.22061 -13.15762 -12.88709 -12.65806 -12.50019 -12.37027 -11.95280 -11.66600 -11.50947 -11.38346 -11.16567 -11.08546 -11.03700 -10.76477 -10.52771 -10.46325 -10.06920 -9.70525 -9.37012 -9.22856 -9.09423 -8.78638 -8.55277 -7.65068 -7.53125 -6.81396 -4.42775 0.97449 1.09560 2.17391 2.63391 2.79983 3.06663 3.09413 3.15224 3.43778 3.61594 3.81254 3.90868 4.06416 4.35398 4.47881 4.51459 4.58934 4.62013 4.63307 4.76853 4.88463 5.02463 5.06938 5.15403 5.30395 5.45443 5.58589 5.64137 5.69973 5.82087 5.94651 6.04735 6.08366 6.17533 6.27278 6.40296 6.70158 6.72586 6.96785 6.99722 7.05941 7.19533 7.32611 7.36395 7.68128 7.73432 7.90376 8.04500 8.16716 8.48737 8.78547 8.81538 8.87941 10.13487 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023476 B = 0.001780 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.425263 B =15726.704630 C =16712.391581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.210 4.210 11 C -0.098 4.098 12 C -0.216 4.216 13 C -0.129 4.129 14 C 0.566 3.434 15 O -0.547 6.547 16 N -0.731 5.731 17 C 0.095 3.905 18 C 0.101 3.899 19 H 0.117 0.883 20 O -0.546 6.546 21 C 0.030 3.970 22 O -0.303 6.303 23 C 0.131 3.869 24 C -0.211 4.211 25 C -0.080 4.080 26 C -0.162 4.162 27 C -0.081 4.081 28 C -0.153 4.153 29 C -0.092 4.092 30 H 0.284 0.716 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.405 0.595 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.377 0.623 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.128 0.872 44 H 0.131 0.869 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.092 -12.608 11.628 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.230 4.230 11 C -0.116 4.116 12 C -0.236 4.236 13 C -0.132 4.132 14 C 0.357 3.643 15 O -0.426 6.426 16 N -0.386 5.386 17 C -0.030 4.030 18 C 0.041 3.959 19 H 0.135 0.865 20 O -0.351 6.351 21 C -0.046 4.046 22 O -0.216 6.216 23 C 0.085 3.915 24 C -0.230 4.230 25 C -0.098 4.098 26 C -0.180 4.180 27 C -0.100 4.100 28 C -0.171 4.171 29 C -0.112 4.112 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.241 0.759 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.225 0.775 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.507 -12.180 11.288 22.721 hybrid contribution 0.268 0.956 0.326 1.045 sum -15.239 -11.224 11.614 22.206 Atomic orbital electron populations 1.69788 1.07579 1.29746 1.33790 1.25965 0.94774 1.01544 0.92296 0.86286 0.80618 0.80495 0.79228 1.19430 1.19980 1.18374 1.19576 0.98057 0.90986 1.40286 0.90073 1.17601 0.91210 0.92484 0.89151 1.21122 1.03439 0.92822 1.05614 1.20445 0.96070 0.96773 0.98331 1.20369 1.01385 0.94676 1.07171 1.19435 0.96524 0.95389 1.01879 1.18870 0.83239 0.82593 0.79646 1.90697 1.66440 1.30146 1.55285 1.45782 1.30610 1.10324 1.51889 1.21724 0.89855 0.95362 0.96090 1.22143 0.85288 0.92077 0.96426 0.86503 1.86658 1.59643 1.54319 1.34521 1.23501 0.96474 0.83367 1.01238 1.86131 1.35833 1.30206 1.69441 1.19085 0.85989 0.94289 0.92090 1.21320 0.99079 0.98236 1.04351 1.20979 0.94463 0.97634 0.96758 1.21080 1.01251 0.92754 1.02946 1.20989 0.94199 0.98990 0.95776 1.20486 0.97422 0.95467 1.03768 1.21623 0.96434 0.96356 0.96763 0.90466 0.88567 0.88823 0.89094 0.75870 0.90597 0.91151 0.77532 0.91172 0.90549 0.85412 0.85780 0.85949 0.85372 0.85119 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.69 10.97 55.55 0.61 -20.09 16 2 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 18.68 29.59 -169.99 -5.03 13.65 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 7 C -0.46 -12.05 9.05 -37.73 -0.34 -12.39 16 8 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 9 C 0.10 2.59 5.57 -106.87 -0.59 1.99 16 10 C -0.21 -4.98 9.78 -38.81 -0.38 -5.36 16 11 C -0.10 -2.09 10.01 -39.73 -0.40 -2.49 16 12 C -0.22 -4.54 9.55 -38.92 -0.37 -4.91 16 13 C -0.13 -3.03 5.87 -105.04 -0.62 -3.64 16 14 C 0.57 12.09 7.77 -12.31 -0.10 12.00 16 15 O -0.55 -13.38 16.33 5.32 0.09 -13.29 16 16 N -0.73 -11.61 5.45 -61.24 -0.33 -11.94 16 17 C 0.09 1.15 5.31 -4.04 -0.02 1.13 16 18 C 0.10 0.98 3.28 -26.73 -0.09 0.89 16 19 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 20 O -0.55 -5.77 13.25 -40.08 -0.53 -6.30 16 21 C 0.03 0.26 4.37 37.16 0.16 0.42 16 22 O -0.30 -3.22 10.10 -24.26 -0.25 -3.47 16 23 C 0.13 1.31 6.69 -39.22 -0.26 1.05 16 24 C -0.21 -1.84 9.04 -39.43 -0.36 -2.20 16 25 C -0.08 -0.62 10.04 -39.60 -0.40 -1.01 16 26 C -0.16 -1.17 10.04 -39.56 -0.40 -1.57 16 27 C -0.08 -0.61 10.04 -39.61 -0.40 -1.01 16 28 C -0.15 -1.38 9.99 -39.43 -0.39 -1.78 16 29 C -0.09 -2.43 8.23 -38.44 -0.32 -2.75 16 30 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 31 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 32 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 33 H 0.09 1.60 6.38 -52.49 -0.33 1.26 16 34 H 0.40 5.87 6.49 -40.82 -0.26 5.61 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.38 2.81 9.05 45.56 0.41 3.22 16 38 H 0.07 0.49 7.65 -51.93 -0.40 0.10 16 39 H 0.08 0.57 7.68 -51.93 -0.40 0.17 16 40 H 0.13 0.94 6.30 -52.48 -0.33 0.60 16 41 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 42 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 44 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 45 H 0.13 3.81 5.76 -52.48 -0.30 3.51 16 LS Contribution 385.07 15.07 5.80 5.80 Total: -1.00 -31.96 385.07 -9.97 -41.93 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -4.97 Total: 13.57 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -5.35 Total: -19.86 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.28 Total: -32.03 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.69 Total: -23.06 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.96 -9.97 -41.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052800521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.219 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds