Wall clock time and date at job start Sat Apr 11 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86806 * 119.99972 * 2 1 4 4 H 1.48498 * 109.46994 * 269.99748 * 3 2 1 5 5 H 1.48498 * 109.46964 * 30.00118 * 3 2 1 6 6 H 1.48498 * 109.47105 * 149.99888 * 3 2 1 7 7 C 1.39939 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99928 * 162.60903 * 7 2 1 9 9 C 1.41428 * 119.99893 * 342.60141 * 7 2 1 10 10 C 1.40796 * 120.17509 * 154.91141 * 9 7 2 11 11 C 1.37713 * 120.03724 * 180.02562 * 10 9 7 12 12 C 1.38362 * 120.41473 * 359.78596 * 11 10 9 13 13 C 1.39885 * 120.35966 * 0.47436 * 12 11 10 14 14 C 1.47888 * 120.02657 * 179.78432 * 13 12 11 15 15 O 1.21550 * 119.99659 * 179.72016 * 14 13 12 16 16 N 1.34776 * 120.00015 * 359.72440 * 14 13 12 17 17 C 1.46498 * 119.99614 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.46860 * 179.97438 * 17 16 14 19 19 H 1.09000 * 109.46977 * 304.99567 * 18 17 16 20 20 O 1.42899 * 109.47271 * 64.99550 * 18 17 16 21 21 C 1.52996 * 109.47236 * 185.00059 * 18 17 16 22 22 O 1.42902 * 109.47545 * 174.99915 * 21 18 17 23 23 C 1.35897 * 117.00376 * 179.97438 * 22 21 18 24 24 C 1.38728 * 120.05571 * 359.72778 * 23 22 21 25 25 C 1.38145 * 119.94421 * 179.74746 * 24 23 22 26 26 C 1.38268 * 120.05567 * 0.50154 * 25 24 23 27 27 C 1.38265 * 120.10827 * 359.77128 * 26 25 24 28 28 C 1.38146 * 120.05631 * 359.97438 * 27 26 25 29 29 C 1.39028 * 119.94572 * 359.50666 * 13 12 11 30 30 H 0.96997 * 119.99836 * 0.02562 * 1 2 3 31 31 H 1.07996 * 119.98041 * 0.02562 * 10 9 7 32 32 H 1.07997 * 119.78995 * 180.02562 * 11 10 9 33 33 H 1.08001 * 119.82443 * 180.23270 * 12 11 10 34 34 H 0.97003 * 119.99990 * 359.97438 * 16 14 13 35 35 H 1.08994 * 109.47725 * 60.00121 * 17 16 14 36 36 H 1.08995 * 109.47324 * 299.99327 * 17 16 14 37 37 H 0.96697 * 114.00203 * 60.00253 * 20 18 17 38 38 H 1.09007 * 109.47103 * 294.99609 * 21 18 17 39 39 H 1.09000 * 109.47235 * 54.99401 * 21 18 17 40 40 H 1.08010 * 120.02989 * 359.97438 * 24 23 22 41 41 H 1.08003 * 119.97372 * 180.27269 * 25 24 23 42 42 H 1.07996 * 119.93980 * 179.75239 * 26 25 24 43 43 H 1.07999 * 119.97065 * 179.97438 * 27 26 25 44 44 H 1.07999 * 120.02229 * 179.97438 * 28 27 26 45 45 H 1.08006 * 120.20213 * 180.23651 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0510 -1.2332 -0.2801 9 6 1.3493 -2.4088 0.3652 10 6 1.8189 -3.6484 -0.1094 11 6 1.1751 -4.8121 0.2480 12 6 0.0680 -4.7739 1.0771 13 6 -0.4162 -3.5513 1.5540 14 6 -1.6030 -3.5186 2.4359 15 8 -2.0202 -2.4564 2.8541 16 7 -2.2217 -4.6667 2.7759 17 6 -3.3976 -4.6342 3.6491 18 6 -3.9035 -6.0601 3.8764 19 1 -4.0897 -6.5373 2.9142 20 8 -2.9192 -6.8059 4.5953 21 6 -5.2021 -6.0178 4.6843 22 8 -5.7362 -7.3385 4.7971 23 6 -6.8966 -7.4776 5.4907 24 6 -7.5056 -6.3667 6.0561 25 6 -8.6878 -6.5100 6.7562 26 6 -9.2587 -7.7607 6.9026 27 6 -8.6507 -8.8703 6.3449 28 6 -7.4711 -8.7315 5.6394 29 6 0.2225 -2.3673 1.2030 30 1 -0.4850 0.8400 -0.0004 31 1 2.6845 -3.6867 -0.7541 32 1 1.5389 -5.7608 -0.1179 33 1 -0.4274 -5.6927 1.3544 34 1 -1.8888 -5.5144 2.4419 35 1 -4.1824 -4.0411 3.1798 36 1 -3.1275 -4.1874 4.6058 37 1 -2.7033 -6.4381 5.4632 38 1 -4.9981 -5.6222 5.6794 39 1 -5.9237 -5.3759 4.1790 40 1 -7.0577 -5.3900 5.9458 41 1 -9.1646 -5.6448 7.1928 42 1 -10.1809 -7.8712 7.4537 43 1 -9.0984 -9.8462 6.4609 44 1 -6.9965 -9.5985 5.2043 45 1 -0.1456 -1.4214 1.5720 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052800521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:53 Heat of formation + Delta-G solvation = -105.318073 kcal Electronic energy + Delta-G solvation = -27477.534951 eV Core-core repulsion = 23423.762921 eV Total energy + Delta-G solvation = -4053.772030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.24937 -40.88032 -39.23026 -38.69038 -37.74698 -35.69885 -35.27004 -32.55120 -32.01503 -31.49847 -31.26954 -30.40327 -27.55669 -26.91682 -24.35198 -23.63168 -23.06370 -22.73791 -22.55675 -21.15251 -19.59839 -19.25841 -18.32878 -17.73340 -17.71286 -17.08950 -16.84411 -16.60720 -16.44431 -16.32681 -16.16378 -15.50030 -15.40737 -15.20081 -15.06766 -14.63486 -14.38488 -14.31919 -14.26453 -13.88538 -13.73281 -13.47349 -13.32948 -12.94554 -12.78087 -12.55195 -12.48882 -12.24500 -12.18285 -12.01558 -11.92094 -11.70656 -11.51930 -11.31218 -11.06960 -10.80593 -10.21506 -9.95686 -9.47786 -9.39043 -9.18265 -8.66867 -6.38554 0.36398 0.38894 0.48699 1.00429 1.36446 1.46119 1.52585 1.80550 2.07732 2.19340 2.42442 2.78089 2.84532 3.31731 3.62398 3.65909 3.69163 3.84742 3.91536 4.02270 4.06075 4.22690 4.23764 4.30626 4.41623 4.49927 4.55616 4.58497 4.59589 4.74494 4.86778 4.91054 5.08529 5.08609 5.18276 5.30296 5.34986 5.38010 5.48306 5.51539 5.60643 5.84912 5.85646 5.92093 6.04560 6.27881 6.41116 6.47932 6.63991 6.68805 6.87631 6.93804 7.26398 8.30151 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023476 B = 0.001780 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.425263 B =15726.704630 C =16712.391581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.029 3.971 3 Si 0.983 3.017 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.498 4.498 8 H 0.084 0.916 9 C 0.066 3.934 10 C -0.216 4.216 11 C -0.097 4.097 12 C -0.197 4.197 13 C -0.140 4.140 14 C 0.563 3.437 15 O -0.587 6.587 16 N -0.709 5.709 17 C 0.093 3.907 18 C 0.116 3.884 19 H 0.116 0.884 20 O -0.560 6.560 21 C 0.032 3.968 22 O -0.321 6.321 23 C 0.108 3.892 24 C -0.222 4.222 25 C -0.088 4.088 26 C -0.165 4.165 27 C -0.084 4.084 28 C -0.171 4.171 29 C -0.129 4.129 30 H 0.287 0.713 31 H 0.109 0.891 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.414 0.586 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.390 0.610 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.151 0.849 44 H 0.132 0.868 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.902 -14.546 12.406 24.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.527 4.527 8 H 0.102 0.898 9 C 0.064 3.936 10 C -0.236 4.236 11 C -0.114 4.114 12 C -0.217 4.217 13 C -0.144 4.144 14 C 0.353 3.647 15 O -0.469 6.469 16 N -0.362 5.362 17 C -0.031 4.031 18 C 0.056 3.944 19 H 0.134 0.866 20 O -0.367 6.367 21 C -0.044 4.044 22 O -0.235 6.235 23 C 0.063 3.937 24 C -0.240 4.240 25 C -0.106 4.106 26 C -0.183 4.183 27 C -0.102 4.102 28 C -0.190 4.190 29 C -0.150 4.150 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.252 0.748 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.240 0.760 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.155 0.845 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.169 0.831 44 H 0.150 0.850 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.326 -14.183 12.078 24.770 hybrid contribution 0.421 1.307 0.150 1.382 sum -15.905 -12.876 12.228 23.839 Atomic orbital electron populations 1.69886 1.09224 1.30614 1.35413 1.26855 0.95428 1.04942 0.91313 0.85197 0.79079 0.75748 0.79684 1.18185 1.19690 1.17876 1.19855 0.98432 0.92155 1.42272 0.89807 1.17958 0.91855 0.93914 0.89879 1.21424 1.03886 0.92851 1.05457 1.20923 0.95428 0.97709 0.97389 1.20852 1.00617 0.95164 1.05039 1.19775 0.97108 0.95472 1.02002 1.18667 0.83102 0.83424 0.79528 1.90674 1.67461 1.31909 1.56827 1.45571 1.30688 1.08903 1.51035 1.21939 0.88333 0.97367 0.95484 1.21920 0.85707 0.90025 0.96740 0.86615 1.86626 1.59865 1.54702 1.35548 1.23477 0.95871 0.83061 1.01965 1.86072 1.36409 1.31060 1.69971 1.19322 0.86213 0.95111 0.93025 1.21518 0.99604 0.98376 1.04519 1.21315 0.94194 0.98713 0.96413 1.21441 1.01905 0.92478 1.02511 1.21313 0.93598 1.00319 0.94971 1.20716 0.98283 0.95423 1.04538 1.21431 0.98212 0.96371 0.98986 0.90286 0.87328 0.84456 0.84806 0.74760 0.90461 0.90550 0.76002 0.89684 0.89577 0.84477 0.83847 0.83666 0.83107 0.85027 0.88242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.99 10.97 21.83 0.24 -45.75 16 2 C 0.03 1.54 5.14 85.25 0.44 1.98 16 3 Si 0.98 39.54 29.59 68.60 2.03 41.57 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 7 C -0.50 -27.17 9.05 23.47 0.21 -26.96 16 8 H 0.08 4.31 7.90 -2.91 -0.02 4.29 16 9 C 0.07 3.61 5.57 -21.32 -0.12 3.49 16 10 C -0.22 -10.16 9.78 22.77 0.22 -9.94 16 11 C -0.10 -3.86 10.01 22.17 0.22 -3.64 16 12 C -0.20 -7.79 9.55 22.70 0.22 -7.57 16 13 C -0.14 -6.62 5.87 -20.13 -0.12 -6.73 16 14 C 0.56 24.12 7.77 86.80 0.67 24.79 16 15 O -0.59 -29.57 16.33 -3.87 -0.06 -29.64 16 16 N -0.71 -21.37 5.45 -465.94 -2.54 -23.91 16 17 C 0.09 2.11 5.31 86.38 0.46 2.57 16 18 C 0.12 2.04 3.28 30.59 0.10 2.14 16 19 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 20 O -0.56 -10.61 13.25 -144.35 -1.91 -12.52 16 21 C 0.03 0.49 4.37 71.98 0.31 0.81 16 22 O -0.32 -6.50 10.10 -87.76 -0.89 -7.38 16 23 C 0.11 2.07 6.69 22.50 0.15 2.22 16 24 C -0.22 -3.57 9.04 22.36 0.20 -3.36 16 25 C -0.09 -1.19 10.04 22.25 0.22 -0.97 16 26 C -0.17 -2.03 10.04 22.28 0.22 -1.81 16 27 C -0.08 -1.11 10.04 22.25 0.22 -0.89 16 28 C -0.17 -2.95 9.99 22.36 0.22 -2.73 16 29 C -0.13 -7.18 8.23 23.01 0.19 -6.99 16 30 H 0.29 14.67 8.30 -92.71 -0.77 13.90 16 31 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 32 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 33 H 0.13 4.09 6.38 -2.91 -0.02 4.08 16 34 H 0.41 10.83 6.49 -92.71 -0.60 10.23 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.39 4.98 9.05 -74.06 -0.67 4.31 16 38 H 0.09 1.03 7.65 -2.38 -0.02 1.02 16 39 H 0.09 1.14 7.68 -2.39 -0.02 1.12 16 40 H 0.14 1.80 6.30 -2.91 -0.02 1.78 16 41 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 42 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 43 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 44 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 45 H 0.10 6.13 5.76 -2.91 -0.02 6.11 16 Total: -1.00 -73.31 385.07 0.69 -72.62 By element: Atomic # 1 Polarization: 38.83 SS G_CDS: -0.23 Total: 38.59 kcal Atomic # 6 Polarization: -37.65 SS G_CDS: 4.06 Total: -33.59 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: -2.30 Total: -69.66 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -2.86 Total: -49.54 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -73.31 0.69 -72.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052800521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.700 kcal (2) G-P(sol) polarization free energy of solvation -73.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds