Wall clock time and date at job start Sat Apr 11 2020 06:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35897 * 116.99919 * 2 1 4 4 C 1.38735 * 120.05263 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94171 * 180.02562 * 4 3 2 6 6 C 1.38258 * 120.05790 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94679 * 179.97438 * 6 5 4 8 8 N 1.46507 * 109.46711 * 89.99728 * 7 6 5 9 9 C 1.34781 * 119.99539 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00102 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.99728 * 180.02562 * 9 8 7 12 12 C 1.50698 * 109.46930 * 180.02562 * 11 9 8 13 13 C 1.38297 * 119.93202 * 89.99982 * 12 11 9 14 14 C 1.38101 * 120.07230 * 180.02562 * 13 12 11 15 15 C 1.38886 * 119.92536 * 359.97438 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47264 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47375 * 119.99795 * 21 19 17 24 24 H 1.48506 * 109.47301 * 239.99793 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 C 1.38271 * 120.11337 * 0.24869 * 6 5 4 28 28 C 1.38150 * 120.05067 * 359.45788 * 27 6 5 29 29 H 1.08998 * 109.47049 * 59.99355 * 1 2 3 30 30 H 1.08995 * 109.46977 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46707 * 299.99870 * 1 2 3 32 32 H 1.07998 * 120.02546 * 0.02562 * 4 3 2 33 33 H 1.08006 * 119.96959 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.46984 * 330.00214 * 7 6 5 35 35 H 1.08995 * 109.47424 * 210.00006 * 7 6 5 36 36 H 0.96995 * 120.00045 * 0.02562 * 8 7 6 37 37 H 1.09003 * 109.46768 * 60.00063 * 11 9 8 38 38 H 1.09004 * 109.46918 * 300.00219 * 11 9 8 39 39 H 1.07999 * 119.96698 * 0.02562 * 13 12 11 40 40 H 1.07992 * 120.03608 * 179.97438 * 14 13 12 41 41 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 43 43 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 44 44 H 1.08000 * 119.97015 * 179.70078 * 27 6 5 45 45 H 1.07998 * 120.02469 * 180.24755 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3021 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 7 4.2073 5.4550 -1.3782 9 6 4.8084 6.6362 -1.6234 10 8 5.1665 7.3374 -0.7010 11 6 5.0353 7.0855 -3.0439 12 6 5.7195 8.4282 -3.0427 13 6 7.1007 8.4988 -3.0438 14 6 7.7308 9.7277 -3.0422 15 6 6.9758 10.8935 -3.0401 16 8 7.5922 12.1029 -3.0390 17 6 8.9354 12.1055 -3.1560 18 1 9.4787 11.1722 -3.1629 19 6 9.6192 13.3066 -3.2676 20 7 8.9574 14.4436 -3.2597 21 14 11.4801 13.3102 -3.4304 22 1 11.9812 11.9124 -3.4133 23 1 11.8638 13.9585 -4.7100 24 1 12.0748 14.0626 -2.2965 25 6 5.5890 10.8192 -3.0338 26 6 4.9650 9.5872 -3.0411 27 6 1.9212 3.6048 0.0079 28 6 1.2916 2.3751 0.0012 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0208 0.3798 -0.0014 33 1 5.1347 2.5749 0.0000 34 1 4.9444 4.9376 0.5160 35 1 3.3585 5.7457 0.5176 36 1 3.9205 4.8943 -2.1159 37 1 4.0769 7.1661 -3.5569 38 1 5.6632 6.3585 -3.5590 39 1 7.6872 7.5920 -3.0458 40 1 8.8093 9.7822 -3.0425 41 1 9.4358 15.2838 -3.3374 42 1 4.9992 11.7239 -3.0276 43 1 3.8866 9.5288 -3.0407 44 1 1.3344 4.5114 0.0140 45 1 0.2130 2.3202 0.0021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110160594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:43 Heat of formation + Delta-G solvation = -51.975540 kcal Electronic energy + Delta-G solvation = -27010.898035 eV Core-core repulsion = 22959.439111 eV Total energy + Delta-G solvation = -4051.458924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.66271 -39.73231 -38.78590 -38.05239 -36.45405 -34.68664 -32.44343 -31.72156 -31.51180 -30.69818 -30.08208 -28.16274 -26.89640 -25.53045 -24.75089 -23.11007 -21.90895 -21.67413 -21.02874 -20.02345 -18.64941 -17.92126 -17.23853 -16.85549 -16.75632 -16.28086 -16.15032 -15.36785 -15.34406 -14.68953 -14.53375 -14.45723 -14.25124 -14.13542 -13.90816 -13.64227 -13.42094 -13.34080 -13.06219 -12.88516 -12.64030 -12.48435 -12.30222 -11.91214 -11.76018 -11.55098 -11.44134 -11.26267 -11.22765 -10.80262 -10.69817 -10.54871 -10.37641 -9.73840 -9.46465 -9.26478 -9.11196 -8.77946 -8.60481 -8.08288 -7.09823 -6.39736 -3.98084 0.85424 0.89968 2.31488 2.33460 2.77273 2.82537 3.08733 3.16804 3.17321 3.23010 3.57654 4.01426 4.29801 4.36637 4.42354 4.58215 4.61789 4.63378 4.88437 4.91687 4.95910 5.03081 5.14882 5.16856 5.28862 5.33350 5.35487 5.39588 5.58317 5.62058 5.73104 5.78639 5.79827 5.87367 5.91636 6.19356 6.27026 6.28206 6.37060 6.48528 6.77010 6.88900 6.98202 7.11892 7.30468 7.43747 7.49553 7.52921 7.90785 8.05916 8.37082 9.06206 9.77512 10.78593 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.034550 B = 0.001544 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.224121 B =18125.492391 C =18529.847306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.131 3.869 4 C -0.153 4.153 5 C -0.060 4.060 6 C -0.142 4.142 7 C 0.165 3.835 8 N -0.737 5.737 9 C 0.508 3.492 10 O -0.520 6.520 11 C -0.079 4.079 12 C -0.170 4.170 13 C -0.057 4.057 14 C -0.232 4.232 15 C 0.156 3.844 16 O -0.179 6.179 17 C -0.390 4.390 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.192 4.192 26 C -0.060 4.060 27 C -0.060 4.060 28 C -0.210 4.210 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.399 0.601 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.126 0.874 41 H 0.269 0.731 42 H 0.116 0.884 43 H 0.108 0.892 44 H 0.128 0.872 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.035 -28.350 3.802 32.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.232 6.232 3 C 0.086 3.914 4 C -0.172 4.172 5 C -0.079 4.079 6 C -0.143 4.143 7 C 0.042 3.958 8 N -0.392 5.392 9 C 0.295 3.705 10 O -0.394 6.394 11 C -0.119 4.119 12 C -0.171 4.171 13 C -0.075 4.075 14 C -0.252 4.252 15 C 0.103 3.897 16 O -0.083 6.083 17 C -0.466 4.466 18 H 0.110 0.890 19 C -0.166 4.166 20 N -0.499 5.499 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.211 4.211 26 C -0.078 4.078 27 C -0.078 4.078 28 C -0.229 4.229 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.232 0.768 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.122 0.878 40 H 0.144 0.856 41 H 0.079 0.921 42 H 0.134 0.866 43 H 0.126 0.874 44 H 0.146 0.854 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.704 -27.515 4.502 31.999 hybrid contribution 0.478 -0.262 -0.326 0.635 sum -15.225 -27.776 4.176 31.950 Atomic orbital electron populations 1.23084 0.78170 1.04095 1.01504 1.86080 1.21582 1.26970 1.88526 1.19114 0.92447 0.84195 0.95674 1.20454 0.91362 0.98761 1.06631 1.20954 1.00135 0.90815 0.95989 1.19843 0.93696 0.94892 1.05851 1.20064 1.00092 0.91442 0.84233 1.46196 1.63167 1.21829 1.07978 1.21091 0.76794 0.80186 0.92439 1.90751 1.48863 1.53532 1.46287 1.20404 1.01988 0.96711 0.92820 1.18641 0.93364 0.92367 1.12724 1.20505 0.93323 0.96468 0.97190 1.21107 1.00462 0.92015 1.11576 1.19388 0.92012 0.86143 0.92170 1.83975 1.22296 1.23536 1.78479 1.21380 0.78754 0.94602 1.51912 0.89036 1.25282 1.00464 0.94174 0.96639 1.70050 1.36086 0.97470 1.46281 0.85650 0.80775 0.78801 0.78214 1.19116 1.20183 1.20186 1.20152 0.91958 0.97569 1.11418 1.20397 0.97954 0.91460 0.98000 1.20922 0.93866 0.97257 0.95791 1.21249 1.00171 0.92245 1.09235 0.92491 0.88137 0.92529 0.84994 0.84957 0.90800 0.90873 0.76772 0.89010 0.89023 0.87834 0.85598 0.92145 0.86568 0.87406 0.85422 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 9.81 101.05 0.99 1.10 16 2 O -0.32 -2.41 10.50 -19.42 -0.20 -2.62 16 3 C 0.13 1.03 6.69 -39.22 -0.26 0.77 16 4 C -0.15 -1.16 9.99 -39.43 -0.39 -1.56 16 5 C -0.06 -0.44 9.69 -39.61 -0.38 -0.83 16 6 C -0.14 -1.11 5.25 -104.60 -0.55 -1.66 16 7 C 0.16 1.56 5.80 -5.19 -0.03 1.53 16 8 N -0.74 -7.19 5.55 -61.47 -0.34 -7.53 16 9 C 0.51 6.99 7.82 -10.98 -0.09 6.90 16 10 O -0.52 -9.83 16.03 5.56 0.09 -9.74 16 11 C -0.08 -1.00 5.83 -29.03 -0.17 -1.17 16 12 C -0.17 -3.01 4.38 -104.58 -0.46 -3.47 16 13 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 14 C -0.23 -5.31 9.17 -39.39 -0.36 -5.67 16 15 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 16 O -0.18 -5.30 9.76 0.05 0.00 -5.30 16 17 C -0.39 -11.22 9.49 30.89 0.29 -10.92 16 18 H 0.09 2.45 5.20 -52.49 -0.27 2.17 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.84 13.67 55.48 0.76 -25.08 16 21 Si 0.94 20.98 29.55 -169.99 -5.02 15.96 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 C -0.19 -4.27 9.99 -39.39 -0.39 -4.66 16 26 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 27 C -0.06 -0.43 9.69 -39.60 -0.38 -0.81 16 28 C -0.21 -1.45 9.04 -39.43 -0.36 -1.81 16 29 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 30 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 34 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 35 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 36 H 0.40 2.84 8.46 -40.82 -0.35 2.49 16 37 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 38 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 39 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.13 2.87 5.64 -52.49 -0.30 2.58 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 43 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.13 0.64 6.30 -52.49 -0.33 0.31 16 LS Contribution 388.60 15.07 5.86 5.86 Total: -1.00 -35.83 388.60 -8.34 -44.18 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.82 Total: 4.85 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -3.67 Total: -20.57 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.42 Total: -32.61 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.11 Total: -17.66 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.83 -8.34 -44.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110160594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.797 kcal (2) G-P(sol) polarization free energy of solvation -35.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds